rna-TanjilR_19694

Transcript Overview


Name	rna-TanjilR_19694
Unique Name	rna-TanjilR_19694_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	405
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:3911602..3912006 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL074	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR246	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0309	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0311	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR0335	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0336	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0342	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0255	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0270	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0322	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0331	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0258	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0274	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0292	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0343	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
antifR0261	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0262	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0262	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0301	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0308	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0303	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0310	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0275	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0242	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0289	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0308	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0258	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0237	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0269	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0283	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0324	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0264		Cicer arietinum
ancarR0295		Cicer arietinum
anccaR0238	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0256	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0324	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0340	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0301	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0319	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0318	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0335	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0334	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0243	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0320	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0331	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0262	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Psat7g203600.1	Pisum sativum Cameor genome v1a	Pisum sativum
Ca_00726.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vum_07G00652.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigst.07G061300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigan.06G154900.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Cc_v2.0_09629.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-XM_004506192.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vigan.07G081800.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va08G057040.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Cr_16483.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
jg44071.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigst.06G142800.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vfaba.Tiffany.R1.6g009920.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
XM_058873675.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Phvul.011G101000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
PvulFLAVERTChr05.785	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Cc_v2.0_23819.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vfaba.Hedin2.R1.6g013720.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
evm.model.Chr11.1164	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vigun05g230000.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
jg7460.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun05g230000.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-KK1_034940	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigun11g119800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
LR48_mrnaVigan08g129700	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
evm.model.Chr05.2196	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Phvul.005G117300.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-XM_004487377.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-KK1_030074	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigun11g119800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_24156	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_23693	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_03121	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_19694	gene-TanjilG_19694_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19694	rna-TanjilR_19694_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_19694_La_Tanjil_v1.0	rna-TanjilR_19694_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19694_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006	rna-TanjilR_19694_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19694_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006	rna-TanjilR_19694_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_19694 vs.

BLAST of rna-TanjilR_19694 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..93

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:3911602..3912006+
coding sequence from alignment at Chr_LG13-CM007373.1:3911602..3912006+

mRNA sequence

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=mRNA; length=405bp
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA

protein sequence of rna-TanjilR_19694_La_Tanjil_v1.0

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=134bp
MTSNRTVPVKRKHHIGEVAGGTAAECAAVCCCCPCAVVHFVVMAVYTVPK
GLLKKAVIKMRKRHRLLDHSANTNSEKNNNNDVVSSEQETSNGMLVGPMA
LEEKEWMEEVELENEMWARFTGTGFWRSDSQRKP

mRNA from alignment at Chr_LG13-CM007373.1:3911602..3912006+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=mRNA; length=405bp; location=Sequence derived from: Chr_LG13-CM007373.1:3911602..3912006+ (Lupinus angustifolius
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3911602..3912006+

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=CDS; length=405bp; location=Sequence derived from: Chr_LG13-CM007373.1:3911602..3912006+ (Lupinus angustifolius
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA

Search form

rna-TanjilR_19694