rna-TanjilR_19694

Transcript Overview
Namerna-TanjilR_19694
Unique Namerna-TanjilR_19694_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length405
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:3911602..3912006 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL074Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0309Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0311Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0335Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0336Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0342Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0255Pisum sativum Cameor genome v1aPisum sativum
anpsR0270Pisum sativum Cameor genome v1aPisum sativum
anpvR0322Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0292Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0343Vigna angularis Jingnong 6 genome v1.1Vigna angularis
antifR0261Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0262Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0301Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0308Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0303Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0310Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0275Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0242Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0289Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0308Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0269Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0283Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0324Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0264Cicer arietinum
ancarR0295Cicer arietinum
anccaR0238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0256Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0324Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0301Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0318Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0335Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0334Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0243Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0320Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat7g203600.1Pisum sativum Cameor genome v1aPisum sativum
Ca_00726.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_07G00652.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigst.07G061300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.06G154900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_09629.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_004506192.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.07G081800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va08G057040.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_16483.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg44071.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.06G142800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.6g009920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
XM_058873675.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Phvul.011G101000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.785Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_23819.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Hedin2.R1.6g013720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr11.1164Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun05g230000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
jg7460.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun05g230000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_034940Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun11g119800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan08g129700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr05.2196Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.005G117300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004487377.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-KK1_030074Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun11g119800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_24156Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_23693Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_03121Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19694gene-TanjilG_19694_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19694rna-TanjilR_19694_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19694_La_Tanjil_v1.0rna-TanjilR_19694_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19694_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006rna-TanjilR_19694_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19694_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006rna-TanjilR_19694_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3911602..3912006Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19694 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..93

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=mRNA; length=405bp
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA
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protein sequence of rna-TanjilR_19694_La_Tanjil_v1.0

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=134bp
MTSNRTVPVKRKHHIGEVAGGTAAECAAVCCCCPCAVVHFVVMAVYTVPK
GLLKKAVIKMRKRHRLLDHSANTNSEKNNNNDVVSSEQETSNGMLVGPMA
LEEKEWMEEVELENEMWARFTGTGFWRSDSQRKP
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mRNA from alignment at Chr_LG13-CM007373.1:3911602..3912006+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=mRNA; length=405bp; location=Sequence derived from: Chr_LG13-CM007373.1:3911602..3912006+ (Lupinus angustifolius
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3911602..3912006+

>rna-TanjilR_19694_La_Tanjil_v1.0 ID=rna-TanjilR_19694_La_Tanjil_v1.0; Name=rna-TanjilR_19694; organism=Lupinus angustifolius; type=CDS; length=405bp; location=Sequence derived from: Chr_LG13-CM007373.1:3911602..3912006+ (Lupinus angustifolius
ATGACTAGCAACAGAACCGTACCGGTAAAACGCAAGCACCACATCGGTGA
GGTGGCGGGTGGCACTGCGGCAGAGTGCGCCGCCGTGTGCTGTTGCTGCC
CTTGCGCGGTGGTGCACTTCGTGGTGATGGCGGTATACACCGTCCCAAAG
GGGCTCTTGAAAAAAGCGGTGATCAAGATGAGGAAACGACACCGTTTATT
AGATCATAGCGCCAACACCAACAGCGAGAAGAACAATAACAACGACGTCG
TTTCGTCAGAGCAGGAGACAAGTAATGGAATGTTGGTGGGTCCCATGGCA
TTAGAGGAGAAGGAATGGATGGAGGAGGTTGAACTGGAGAATGAGATGTG
GGCCCGGTTCACTGGAACCGGGTTCTGGAGAAGTGACTCTCAGCGTAAAC
CCTAA
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