rna-TanjilR_19691

Transcript Overview
Namerna-TanjilR_19691
Unique Namerna-TanjilR_19691_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length954
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:3947068..3948021 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL074Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0309Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0311Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0263Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0306Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0336Cajanus cajan Asha genome v1.0Cajanus cajan
anpsR0255Pisum sativum Cameor genome v1aPisum sativum
anpsR0270Pisum sativum Cameor genome v1aPisum sativum
anpvR0322Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0292Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0343Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0281Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0295Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0261Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0262Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0308Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0310Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0275Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0242Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0289Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0308Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0269Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0283Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0324Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0264Cicer arietinum
ancarR0295Cicer arietinum
anccaR0238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0256Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0324Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0301Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0318Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0335Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0334Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0243Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0320Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_15208Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004506185.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun05g230500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Phvul.005G117800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg7511.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr05.2201Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va05G046540.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.011G100100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.1000882Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
LR48_mrnaVigan05g163600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
XM_058877359.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_07G00642.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun11g120600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun11g120600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va08G057170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr11.595Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014663201.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun05g230500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.06G155700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_09621.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.06G143500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_23813.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.07G081100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.07G060800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_034933Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_06G01022.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat07G0551700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan08g130400Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_23686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19691gene-TanjilG_19691_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19691rna-TanjilR_19691_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19691_La_Tanjil_v1.0rna-TanjilR_19691_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021Lupinus angustifoliusCDS
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680Lupinus angustifoliusCDS
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021Lupinus angustifoliusexon
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680Lupinus angustifoliusexon
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19691 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003172MD-2-related lipid-recognition domainSMARTSM00737pgtp_13coord: 31..135
e-value: 2.8E-14
score: 63.4
IPR003172MD-2-related lipid-recognition domainPFAMPF02221E1_DerP2_DerF2coord: 29..127
e-value: 1.3E-13
score: 51.5
NoneNo IPR availableGENE3D2.60.40.770coord: 27..134
e-value: 1.5E-5
score: 27.2
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 28..125

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA
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protein sequence of rna-TanjilR_19691_La_Tanjil_v1.0

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=135bp
MEFQSLHKFYYILFLSILFLSSFLAQAKVTFKYCDQKGNYAVKVSGIEIS
PNPVVSGEPANFKISASSGKAISGGEVVIGVSYIGVTVHTERIDLCQEVT
CPVSNGNFLISHTQTLPSITPPVSFSLSKYSLVEY
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mRNA from alignment at Chr_LG13-CM007373.1:3947068..3948021-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3947068..3948021-

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=CDS; length=408bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGATCAGAAGGGAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCA
CCAAACCCTGTTGTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTC
TTCTGGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATA
TTGGGGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACC
TGTCCCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCC
TTCAATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAG
AATACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR014756Ig_E-set