Transcript Overview
| Name | rna-TanjilR_19691 |
|---|
| Unique Name | rna-TanjilR_19691_La_Tanjil_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Lupinus angustifolius (blue lupin) |
|---|
| Sequence length | 954 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_19691 | rna-TanjilR_19691_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_19691_La_Tanjil_v1.0 | rna-TanjilR_19691_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021 | rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021 | Lupinus angustifolius | CDS |
| rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680 | rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680 | Lupinus angustifolius | CDS |
| rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270 | rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021 | rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021 | Lupinus angustifolius | exon |
| rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680 | rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680 | Lupinus angustifolius | exon |
| rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270 | rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003172 | MD-2-related lipid-recognition domain | SMART | SM00737 | pgtp_13 | coord: 31..135
e-value: 2.8E-14
score: 63.4 |
| IPR003172 | MD-2-related lipid-recognition domain | PFAM | PF02221 | E1_DerP2_DerF2 | coord: 29..127
e-value: 1.3E-13
score: 51.5 |
| None | No IPR available | GENE3D | 2.60.40.770 | | coord: 27..134
e-value: 1.5E-5
score: 27.2 |
| IPR014756 | Immunoglobulin E-set | SUPERFAMILY | 81296 | E set domains | coord: 28..125 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA back to topprotein sequence of rna-TanjilR_19691_La_Tanjil_v1.0 >rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=135bp
MEFQSLHKFYYILFLSILFLSSFLAQAKVTFKYCDQKGNYAVKVSGIEIS
PNPVVSGEPANFKISASSGKAISGGEVVIGVSYIGVTVHTERIDLCQEVT
CPVSNGNFLISHTQTLPSITPPVSFSLSKYSLVEY back to topmRNA from alignment at Chr_LG13-CM007373.1:3947068..3948021- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA back to topCoding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3947068..3948021- >rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=CDS; length=408bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGATCAGAAGGGAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCA
CCAAACCCTGTTGTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTC
TTCTGGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATA
TTGGGGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACC
TGTCCCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCC
TTCAATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAG
AATACTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
|
