rna-TanjilR_19691

Transcript Overview


Name	rna-TanjilR_19691
Unique Name	rna-TanjilR_19691_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	954
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:3947068..3948021 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL074	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR246	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0309	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0311	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0263	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0306	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0336	Cajanus cajan Asha genome v1.0	Cajanus cajan
anpsR0255	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0270	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0322	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0331	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0258	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0274	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0292	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0343	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0281	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0295	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0261	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0262	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0262	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0308	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0310	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0275	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0242	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0289	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0308	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0258	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0237	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0269	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0283	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0324	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0264		Cicer arietinum
ancarR0295		Cicer arietinum
anccaR0238	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0256	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0324	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0340	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0301	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0319	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0318	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0335	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0334	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0243	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0320	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0331	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0262	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Ca_15208	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_004506185.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vigun05g230500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Phvul.005G117800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
jg7511.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
evm.model.Chr05.2201	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Va05G046540.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Phvul.011G100100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
PvulFLAVERTChr05.1000882	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
LR48_mrnaVigan05g163600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
XM_058877359.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vum_07G00642.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigun11g120600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigun11g120600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Va08G057170.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
PvulFLAVERTChr11.595	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-XM_014663201.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun05g230500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigan.06G155700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Cc_v2.0_09621.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigst.06G143500.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Cc_v2.0_23813.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigan.07G081100.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vigst.07G060800.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-KK1_034933	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vum_06G01022.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Psat07G0551700-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
LR48_mrnaVigan08g130400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_23686	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_19691	gene-TanjilG_19691_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19691	rna-TanjilR_19691_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_19691_La_Tanjil_v1.0	rna-TanjilR_19691_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021	rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021	Lupinus angustifolius	CDS
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680	rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680	Lupinus angustifolius	CDS
rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270	rna-TanjilR_19691_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021	rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947919..3948021	Lupinus angustifolius	exon
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680	rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947579..3947680	Lupinus angustifolius	exon
rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270	rna-TanjilR_19691_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3947068..3947270	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_19691 vs.

BLAST of rna-TanjilR_19691 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 31..135 e-value: 2.8E-14 score: 63.4
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 29..127 e-value: 1.3E-13 score: 51.5
None	No IPR available	GENE3D	2.60.40.770		coord: 27..134 e-value: 1.5E-5 score: 27.2
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 28..125

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:3947068..3948021-
coding sequence from alignment at Chr_LG13-CM007373.1:3947068..3948021-

mRNA sequence

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA

protein sequence of rna-TanjilR_19691_La_Tanjil_v1.0

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=135bp
MEFQSLHKFYYILFLSILFLSSFLAQAKVTFKYCDQKGNYAVKVSGIEIS
PNPVVSGEPANFKISASSGKAISGGEVVIGVSYIGVTVHTERIDLCQEVT
CPVSNGNFLISHTQTLPSITPPVSFSLSKYSLVEY

mRNA from alignment at Chr_LG13-CM007373.1:3947068..3948021-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=mRNA; length=954bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGGTACTTCACCCTTATCCTTTCTCTTTTTATTTTAGATTTAGTTTTTG
TGTAGGCCTATGTGATCTAATCTCGTTCTTTTCAACATTAGGATTTTGTT
GGGTTTAATTTTTTGTTGCAAATTGCACTTTTTTATGTTTGTGCTTCAGT
GATGGAATCTGTGATCGTGTTTGTTCAGATTTGATTTTGCTATTTTTTGT
TTTTTATTTAATTTTATGATAAATAAAAAATGTGAACGCAGATCAGAAGG
GAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCACCAAACCCTGTT
GTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTCTTCTGGTAATCT
CTCTTTTTTCTTCATTTTTTCCTCTTTTTAAAATGCATGATAGTGTTTAA
TGTTGTGAATTGTGATTACTGGACATACATAGTTACATTGTTTTCAAGAT
GAAGTTGATCACAAATGATTACATGTTTCTGATTTTTTTTTATAATTTTA
TGTTGTTTACAAATATAAAGGGTATTTATACACCCTAGTTAGTGTTCTAT
TTGTTCCTTATGTTCATGAGAGTTGCTTCATCAATTAGTTTTATTTTTAC
TTATTTACTGTACCAGATTATAAATGGAGTTTCTGTGTATCTTTTATGCA
GGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATATTGG
GGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACCTGTC
CCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCA
ATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAGAATA
CTGA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3947068..3948021-

>rna-TanjilR_19691_La_Tanjil_v1.0 ID=rna-TanjilR_19691_La_Tanjil_v1.0; Name=rna-TanjilR_19691; organism=Lupinus angustifolius; type=CDS; length=408bp; location=Sequence derived from: Chr_LG13-CM007373.1:3947068..3948021- (Lupinus angustifolius
ATGGAGTTTCAGTCTCTTCATAAGTTCTACTACATACTATTCTTATCCAT
CTTATTCCTTTCATCATTTCTCGCTCAAGCTAAGGTTACCTTCAAATACT
GCGATCAGAAGGGAAACTATGCTGTGAAGGTGTCTGGAATTGAAATATCA
CCAAACCCTGTTGTGAGTGGTGAACCTGCTAACTTCAAGATCTCAGCTTC
TTCTGGAAAAGCTATTTCTGGTGGGGAGGTGGTAATTGGAGTTTCATATA
TTGGGGTGACTGTCCACACTGAAAGAATTGATCTATGTCAGGAAGTCACC
TGTCCCGTTTCTAATGGCAATTTTCTGATTTCTCACACCCAAACATTGCC
TTCAATCACTCCTCCGGTGAGTTTTTCTCTTTCAAAGTACAGCCTCGTAG
AATACTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003172	ML_dom
IPR014756	Ig_E-set

Search form

rna-TanjilR_19691