rna-TanjilR_28908

Transcript Overview
Namerna-TanjilR_28908
Unique Namerna-TanjilR_28908_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length981
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:5180009..5180989 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR299Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR0394Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0483Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0462Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0335Pisum sativum Cameor genome v1aPisum sativum
anpvR0424Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0456Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0375Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0406Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0413Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0424Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0378Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0386Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0386Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0365Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0357Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0425Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0354Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0393Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0400Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0405Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0388Cicer arietinum
anccaR0335Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0343Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0417Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0400Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0408Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0409Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0427Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0427Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0437Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0356Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0470Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.02G161300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va04G018690.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr03.1232Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004501810.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-KK1_008843Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g116640.1Pisum sativum Cameor genome v1aPisum sativum
Vigan.02G234300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat05G0345800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.003G205700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_07441Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr09.1001033Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014644494.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g094700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigst.01G274100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan01g230600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.2g089080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_12581.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun09g094700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_26953.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
XM_058927579.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_05796.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va01G082460.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.2g073280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.009G173000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr09.125Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan04g068300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_02G01819.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg52849.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.01G397800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_28908gene-TanjilG_28908_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28908rna-TanjilR_28908_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_28908_La_Tanjil_v1.0rna-TanjilR_28908_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771Lupinus angustifoliusexon
rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771Lupinus angustifoliusCDS
rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28908 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008586Protein of unknown function DUF868, plantPFAMPF05910DUF868coord: 29..258
e-value: 4.6E-94
score: 315.2

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=mRNA; length=981bp
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGGTTTAAAGCatgcattatttattttaaagccGATTTT
GCCATCTTCTTCtgcatcatcattatcatcatcgtCACCATCATTATCGC
GTTCATCGTCATCTACACCATTGTCATCTCAGACAGAGAGTTCTGGGTCA
GTGGAAGGGTTGAGTACAATTAGTGggttatcatcatcatcagagTTTTC
CTTGTTTCTCTATGCCTGGAAGGTTGAATGA
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protein sequence of rna-TanjilR_28908_La_Tanjil_v1.0

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=285bp
MQDSIGIPACFSSVEKTSDDNVLGAVTRSGQSVYMSVYRTKIADHCRLIT
ITWCKNLLLHGLSISVEGPEGENQYSCKVELKPWYFWRKQGSKRFIVDGK
YVDVFWDLKAAKFNGETEPTSEYYVAVVCDQEIVLLLGDLKKEAHKRTGC
KQALIDPILVSRKEHIFGKRKFSTKAKFHEKGRFHEISIECKNKSSGDLP
SVSEIQPELEIRFDGHLVIHVKHLQWKFRGNESVHLNKMRVEVYWDVHDW
LFSPESSGSVEGLSTISGLSSSSEFSLFLYAWKVE
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mRNA from alignment at Chr_LG15-CM007375.1:5180009..5180989+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=mRNA; length=981bp; location=Sequence derived from: Chr_LG15-CM007375.1:5180009..5180989+ (Lupinus angustifolius
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGGTTTAAAGCatgcattatttattttaaagccGATTTT
GCCATCTTCTTCtgcatcatcattatcatcatcgtCACCATCATTATCGC
GTTCATCGTCATCTACACCATTGTCATCTCAGACAGAGAGTTCTGGGTCA
GTGGAAGGGTTGAGTACAATTAGTGggttatcatcatcatcagagTTTTC
CTTGTTTCTCTATGCCTGGAAGGTTGAATGA
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Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:5180009..5180989+

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=CDS; length=858bp; location=Sequence derived from: Chr_LG15-CM007375.1:5180009..5180989+ (Lupinus angustifolius
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGAGAGTTCTGGGTCAGTGGAAGGGTTGAGTACAATTAG
TGggttatcatcatcatcagagTTTTCCTTGTTTCTCTATGCCTGGAAGG
TTGAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008586DUF868_pln