Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_07928 rna-TanjilR_07928_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide rna-TanjilR_07928_La_Tanjil_v1.0 rna-TanjilR_07928_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19028862..19028873 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19028862..19028873 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026847..19026903 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026847..19026903 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026449..19026505 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026449..19026505 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026301..19026341 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026301..19026341 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026005..19026073 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026005..19026073 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025816..19025895 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025816..19025895 Lupinus angustifolius CDS rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025541..19025701 rna-TanjilR_07928_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025541..19025701 Lupinus angustifolius CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19028862..19028873 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19028862..19028873 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026847..19026903 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026847..19026903 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026449..19026505 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026449..19026505 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026301..19026341 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026301..19026341 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026005..19026073 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19026005..19026073 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025816..19025895 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025816..19025895 Lupinus angustifolius exon rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025541..19025701 rna-TanjilR_07928_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19025541..19025701 Lupinus angustifolius exon
Homology
BLAST of rna-TanjilR_07928 vs. DB:Swiss
Match:
GCT21_ARATH (Gamma-glutamylcyclotransferase 2-1 OS=Arabidopsis thaliana OX=3702 GN=GGCT2;1 PE=1 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 2.547e-24
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 2
Query: 1535 MVFWVFGYGSLVWNPGFEYDEKIVGFIKDYRRVFDLGKCSFFLHAGEFVYCMHTID*VCIAFTNA*RFDFYLYFAACIDHRGTPEHPARTCTLEEKEGALC 1837
MV WVFGYGSL+WNPGF++DEK++G+IKDY+RVFDL ACIDHRGTPEHPARTCTLE+ GA+C
Sbjct: 1 MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDL---------------------------------------ACIDHRGTPEHPARTCTLEQSTGAIC 62 HSP 2 Score: 65.4698 bits (158), Expect = 1.829e-10
Identity = 46/122 (37.70%), Postives = 57/122 (46.72%), Query Frame = 1
Query: 2947 LIPLTCAYLFRQIATAHGPCGNNRDYLFLLEKAMHDIGKLSICTITVIVYDSLFKIMNFVDTKTDELRGFDL*CVGHEDNYVIELANEVRKELGIVNIVPKDKKLVAHP--THVPIPTLQLH 3306
L P + RQIATA GPCGNNR+YLF LEKAM DI HE+ YVIELANEVRK+L + P++ K + P +HV + + Q H
Sbjct: 128 LGPAPLEEMARQIATASGPCGNNREYLFKLEKAMFDI--------------------------------------EHEEEYVIELANEVRKQLDL----PEEVKALLKPIVSHVSVKS-QAH 206
BLAST of rna-TanjilR_07928 vs. DB:Swiss
Match:
GCT22_ARATH (Gamma-glutamylcyclotransferase 2-2 OS=Arabidopsis thaliana OX=3702 GN=GGCT2;2 PE=1 SV=1)
HSP 1 Score: 103.605 bits (257), Expect = 1.933e-23
Identity = 52/101 (51.49%), Postives = 57/101 (56.44%), Query Frame = 2
Query: 1535 MVFWVFGYGSLVWNPGFEYDEKIVGFIKDYRRVFDLGKCSFFLHAGEFVYCMHTID*VCIAFTNA*RFDFYLYFAACIDHRGTPEHPARTCTLEEKEGALC 1837
MV WVFGYGSLVWNPGF YDEK++GFIK Y+RVFDL ACIDHRGTPEHPARTCTLE+ E A+C
Sbjct: 1 MVMWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDL---------------------------------------ACIDHRGTPEHPARTCTLEKAEEAIC 62 HSP 2 Score: 72.4034 bits (176), Expect = 1.146e-12
Identity = 52/136 (38.24%), Postives = 64/136 (47.06%), Query Frame = 1
Query: 2947 LIPLTCAYLFRQIATAHGPCGNNRDYLFLLEKAMHDIGKLSICTITVIVYDSLFKIMNFVDTKTDELRGFDL*CVGHEDNYVIELANEVRK---ELGIVNIVP-KDKKL--VAHPTHVPIPT----LQLHPIPITS 3324
L P + RQIATA+GPCGNNRDYLFLLEKAMHDI GHE++YVIELANEVRK E + P K+ + VA+ + +PT L HP + +
Sbjct: 128 LGPAPLEDMARQIATANGPCGNNRDYLFLLEKAMHDI--------------------------------------GHEEDYVIELANEVRKVLAESSTKKVTPVKESRASRVANKSKNNVPTAHQILPHHPEAVAT 225
BLAST of rna-TanjilR_07928 vs. DB:Swiss
Match:
GCT23_ARATH (Gamma-glutamylcyclotransferase 2-3 OS=Arabidopsis thaliana OX=3702 GN=GGCT2;3 PE=1 SV=1)
HSP 1 Score: 65.855 bits (159), Expect = 9.352e-11
Identity = 37/102 (36.27%), Postives = 42/102 (41.18%), Query Frame = 2
Query: 1535 MVFWVFGYGSLVWNPGFEYDEKIVGFIKDYRRVFDLGKCSFFLHAGEFVYCMHTID*VCIAFTNA*RFDFYLYFAACIDHRGTPEHPARTCTLEEKEGALCV 1840
M WVFGYGSL+W GF +DE + GFIK YRRVF G DHRGTP+ P RT TLE +C
Sbjct: 1 MAMWVFGYGSLIWKTGFPFDESLPGFIKGYRRVFHQG---------------------------------------STDHRGTPDFPGRTVTLEAAHEEVCC 63
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07928 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 3
500 1000 1500 2000 2500 3000 Expect = 2.55e-24 / Id = 49.50 Expect = 1.83e-10 / Id = 49.50 Expect = 1.93e-23 / Id = 51.49 Expect = 1.15e-12 / Id = 51.49 Expect = 9.35e-11 / Id = 36.27 Sequence GCT21_ARATH GCT22_ARATH GCT23_ARATH
Match Name E-value Identity Description
GCT21_ARATH 2.547e-24 49.50 Gamma-glutamylcyclotransferase 2-1 OS=Arabidopsis ... [more] GCT22_ARATH 1.933e-23 51.49 Gamma-glutamylcyclotransferase 2-2 OS=Arabidopsis ... [more] GCT23_ARATH 9.352e-11 36.27 Gamma-glutamylcyclotransferase 2-3 OS=Arabidopsis ... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_07928_La_Tanjil_v1.0 ID=rna-TanjilR_07928_La_Tanjil_v1.0; Name=rna-TanjilR_07928; organism=Lupinus angustifolius; type=mRNA; length=3333bp back to top protein sequence of rna-TanjilR_07928_La_Tanjil_v1.0
>rna-TanjilR_07928_La_Tanjil_v1.0 ID=rna-TanjilR_07928_La_Tanjil_v1.0; Name=rna-TanjilR_07928_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=158bp back to top mRNA from alignment at Chr_LG15-CM007375.1:19025541..19028873-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_07928_La_Tanjil_v1.0 ID=rna-TanjilR_07928_La_Tanjil_v1.0; Name=rna-TanjilR_07928; organism=Lupinus angustifolius; type=mRNA; length=3333bp; location=Sequence derived from: Chr_LG15-CM007375.1:19025541..19028873- (Lupinus angustifoliusATGTCTTTGATG TGGGGTGCTGCTTATTGTTTTGGAGGAGGC
CCTGAAAAGGAAAAATTGGCTATGCAG TATTTAGAGAGACGGGAATGTGAATATGATCA
AAAGACTCTTGTAAGCTTCTACAAG GAAGAAGATTCTCTGAAC
CCTGTTTTAACTGGAGTCATTGT ATTCACATCTACTGCAGACAAAGCAAACAAATACTACCTGGGACCTGCCC
CACTGGAAGACATGGCAAG ACAAATAGCAACTGCTCATGGC
CCTTGTGGAAACAATAGAGATTATCTATTCCTGCTTGAAAAGGCCATGCA
TGATATTG GCCATGAAGATAACTATGTGATAGAGCT
TGCGAATGAAGTGAGAAAAGAACTTGGAATAGTGAATATAGTCCCAAAAG
ACAAGAAGTTGGTTGCACACCCTACTCATGTGCCTATCCCAACCCTTCAA
CTGCACCCAATACCTATTACTTCGGATAGTTAA back to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:19025541..19028873-
>rna-TanjilR_07928_La_Tanjil_v1.0 ID=rna-TanjilR_07928_La_Tanjil_v1.0; Name=rna-TanjilR_07928; organism=Lupinus angustifolius; type=CDS; length=477bp; location=Sequence derived from: Chr_LG15-CM007375.1:19025541..19028873- (Lupinus angustifolius back to top
