Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g227400 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-protein Vigna angularis polypeptide LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 Vigna angularis polypeptide
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075331..32075333 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075331..32075333 Vigna angularis start_codon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075333 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075333 Vigna angularis CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075333 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075333 Vigna angularis exon
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075033 LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32075031..32075033 Vigna angularis stop_codon
Homology
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=MP3 PE=1 SV=1)
HSP 1 Score: 173.711 bits (439), Expect = 6.840e-57
Identity = 79/100 (79.00%), Postives = 90/100 (90.00%), Query Frame = 1
Query: 1 MDLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVIN 300
M+ T QLSQYNGTD SKPIYVA+KGRV+DVTTGKSFYG GG Y+MFAGKDASRAL KMSKN+ED+SPSL+GL+EKEI LNDWE KF+AKYPVVGRV++
Sbjct: 1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
MSBP2_ORYSJ (Membrane steroid-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MSBP2 PE=2 SV=1)
HSP 1 Score: 116.701 bits (291), Expect = 2.165e-32
Identity = 52/97 (53.61%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L QY+G+DP KP+ +A+KG++YDV+ + FYGPGG YA+FAGKDASRALAKMS +D++ + GLS E+ L DWE KF +KY VG +
Sbjct: 120 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSFEPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTI 216
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MSBP1 PE=1 SV=2)
HSP 1 Score: 114.775 bits (286), Expect = 4.759e-32
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L QY+G+DP KP+ +A+K ++YDVT + FYGPGG YA+FAGKDASRALAKMS ++D++ + GL E+ L DWE KF +KY VG V
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
MSBP1_ORYSJ (Membrane steroid-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSBP1 PE=1 SV=1)
HSP 1 Score: 114.005 bits (284), Expect = 1.313e-31
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
+++ +L QY+G+DP KP+ +A+KG++YDVT + FYGPGG YA+FAGKDASRALAKMS +D++ + GL E+ L DWE KF KY VG V
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVGTV 169
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=MSBP2 PE=1 SV=1)
HSP 1 Score: 112.079 bits (279), Expect = 5.707e-31
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L Y+G+D KP+ +A+KG++YDV+ + FYGPGG YA+FAGKDASRALAKMS D+D++ + GL E+ L DWE KF +KY VG +
Sbjct: 70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
NENF_RAT (Neudesin OS=Rattus norvegicus OX=10116 GN=Nenf PE=2 SV=1)
HSP 1 Score: 93.9745 bits (232), Expect = 1.592e-24
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y+G + +PIY+AVKG V+DVT+GK FYG G Y AGKD+SR +AKMS + D++ + GL+ KE+ L+D +K ++AKYP+VG R++N
Sbjct: 46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILN 148
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DAP1 PE=1 SV=1)
HSP 1 Score: 91.6633 bits (226), Expect = 8.908e-24
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKN-------DEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVI 297
+ P LS++NG D K I++A++G+VYD T G+ FYGP G Y FAG DASR LA S + D+ I P LD L++++I L++W+ F+ KYP +G +I
Sbjct: 43 NFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDP-LDDLTKEQIDALDEWQEHFENKYPCIGTLI 145
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
NENF_MOUSE (Neudesin OS=Mus musculus OX=10090 GN=Nenf PE=1 SV=1)
HSP 1 Score: 91.6633 bits (226), Expect = 1.343e-23
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y G + +PIY+AVKG V+DVT+GK FYG G Y AGKD+SR +AKMS + D++ GL+ KE+ L+D +K ++AKYP+VG R++N
Sbjct: 46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILN 148
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dap1 PE=1 SV=1)
HSP 1 Score: 90.5077 bits (223), Expect = 2.919e-23
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPS-------LDGLSEKEIGVLNDWENKFQAKYPVVGRVIN 300
D TP +L +YNG+ S +++A+KG VY+VT G FYGP G Y+ FAG DASR LAK S +DE I S L+++E LNDW+ F KY VGR+I+
Sbjct: 42 DYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLIS 146
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match:
NENF_HUMAN (Neudesin OS=Homo sapiens OX=9606 GN=NENF PE=1 SV=1)
HSP 1 Score: 88.9669 bits (219), Expect = 1.569e-22
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y G + +PIY+AVKG V+DVT+GK FYG G Y GKD++R +AKMS + D++ GL+ KE+ L++ K ++AKYP+VG R++N
Sbjct: 47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILN 149
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1 )
Total hits: 10
50 100 150 200 250 300 Expect = 6.84e-57 / Id = 79.00 Expect = 2.17e-32 / Id = 53.61 Expect = 4.76e-32 / Id = 53.61 Expect = 1.31e-31 / Id = 53.61 Expect = 5.71e-31 / Id = 51.55 Expect = 1.59e-24 / Id = 46.60 Expect = 8.91e-24 / Id = 43.81 Expect = 1.34e-23 / Id = 46.60 Expect = 2.92e-23 / Id = 47.17 Expect = 1.57e-22 / Id = 43.69 Sequence SBP3_ARATH MSBP2_ORYSJ MSBP1_ARATH MSBP1_ORYSJ MSBP2_ARATH NENF_RAT DAP1_YEAST NENF_MOUSE DAP1_SCHPO NENF_HUMAN
Match Name E-value Identity Description
SBP3_ARATH 6.840e-57 79.00 Probable steroid-binding protein 3 OS=Arabidopsis ... [more] MSBP2_ORYSJ 2.165e-32 53.61 Membrane steroid-binding protein 2 OS=Oryza sativa... [more] MSBP1_ARATH 4.759e-32 53.61 Membrane steroid-binding protein 1 OS=Arabidopsis ... [more] MSBP1_ORYSJ 1.313e-31 53.61 Membrane steroid-binding protein 1 OS=Oryza sativa... [more] MSBP2_ARATH 5.707e-31 51.55 Membrane steroid-binding protein 2 OS=Arabidopsis ... [more] NENF_RAT 1.592e-24 46.60 Neudesin OS=Rattus norvegicus OX=10116 GN=Nenf PE=... [more] DAP1_YEAST 8.908e-24 43.81 Damage response protein 1 OS=Saccharomyces cerevis... [more] NENF_MOUSE 1.343e-23 46.60 Neudesin OS=Mus musculus OX=10090 GN=Nenf PE=1 SV=... [more] DAP1_SCHPO 2.919e-23 47.17 Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more] NENF_HUMAN 1.569e-22 43.69 Neudesin OS=Homo sapiens OX=9606 GN=NENF PE=1 SV=1 [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=mRNA; length=303bp back to top protein sequence of LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1
>LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=100bp back to top mRNA from alignment at Chr_4-CM003374.1:32075031..32075333-
Legend: polypeptide CDS exon start_codon stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=mRNA; length=303bp; location=Sequence derived from: Chr_4-CM003374.1:32075031..32075333- (Vigna angularisATG GACCTCACACCGCACCAGCTCAGCCAGTACAACGGCACCGACCCCTC
CAAGCCCATCTACGTCGCCGTGAAGGGCCGCGTCTACGACGTCACCACCG
GAAAATCCTTCTACGGTCCCGGCGGTGCCTACGCCATGTTCGCCGGCAAG
GACGCCAGCAGAGCCCTCGCCAAGATGAGCAAGAACGACGAAGACATCTC
CCCCTCCCTCGACGGCCTCTCCGAAAAGGAGATCGGAGTTCTCAACGATT
GGGAGAACAAGTTCCAAGCTAAGTACCCTGTCGTTGGTCGCGTTATCAAT
TGA back to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32075031..32075333-
>LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=CDS; length=303bp; location=Sequence derived from: Chr_4-CM003374.1:32075031..32075333- (Vigna angularis back to top
