LR48_mrnaVigan04g227400
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=MP3 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 6.840e-57 Identity = 79/100 (79.00%), Postives = 90/100 (90.00%), Query Frame = 1 Query: 1 MDLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVIN 300
M+ T QLSQYNGTD SKPIYVA+KGRV+DVTTGKSFYG GG Y+MFAGKDASRAL KMSKN+ED+SPSL+GL+EKEI LNDWE KF+AKYPVVGRV++
Sbjct: 1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: MSBP2_ORYSJ (Membrane steroid-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MSBP2 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.165e-32 Identity = 52/97 (53.61%), Postives = 72/97 (74.23%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L QY+G+DP KP+ +A+KG++YDV+ + FYGPGG YA+FAGKDASRALAKMS +D++ + GLS E+ L DWE KF +KY VG +
Sbjct: 120 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSFEPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTI 216
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MSBP1 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.759e-32 Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L QY+G+DP KP+ +A+K ++YDVT + FYGPGG YA+FAGKDASRALAKMS ++D++ + GL E+ L DWE KF +KY VG V
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: MSBP1_ORYSJ (Membrane steroid-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSBP1 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.313e-31 Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
+++ +L QY+G+DP KP+ +A+KG++YDVT + FYGPGG YA+FAGKDASRALAKMS +D++ + GL E+ L DWE KF KY VG V
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVGTV 169
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=MSBP2 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.707e-31 Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRV 294
++T +L Y+G+D KP+ +A+KG++YDV+ + FYGPGG YA+FAGKDASRALAKMS D+D++ + GL E+ L DWE KF +KY VG +
Sbjct: 70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: NENF_RAT (Neudesin OS=Rattus norvegicus OX=10116 GN=Nenf PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.592e-24 Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1 Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y+G + +PIY+AVKG V+DVT+GK FYG G Y AGKD+SR +AKMS + D++ + GL+ KE+ L+D +K ++AKYP+VG R++N
Sbjct: 46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILN 148
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DAP1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 8.908e-24 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKN-------DEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVI 297
+ P LS++NG D K I++A++G+VYD T G+ FYGP G Y FAG DASR LA S + D+ I P LD L++++I L++W+ F+ KYP +G +I
Sbjct: 43 NFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDP-LDDLTKEQIDALDEWQEHFENKYPCIGTLI 145
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: NENF_MOUSE (Neudesin OS=Mus musculus OX=10090 GN=Nenf PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.343e-23 Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y G + +PIY+AVKG V+DVT+GK FYG G Y AGKD+SR +AKMS + D++ GL+ KE+ L+D +K ++AKYP+VG R++N
Sbjct: 46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILN 148
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dap1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.919e-23 Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 4 DLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPS-------LDGLSEKEIGVLNDWENKFQAKYPVVGRVIN 300
D TP +L +YNG+ S +++A+KG VY+VT G FYGP G Y+ FAG DASR LAK S +DE I S L+++E LNDW+ F KY VGR+I+
Sbjct: 42 DYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLIS 146
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Match: NENF_HUMAN (Neudesin OS=Homo sapiens OX=9606 GN=NENF PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.569e-22 Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 7 LTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDEDISPSLDGLSEKEIGVLNDWENK-FQAKYPVVG----RVIN 300
T +L++Y G + +PIY+AVKG V+DVT+GK FYG G Y GKD++R +AKMS + D++ GL+ KE+ L++ K ++AKYP+VG R++N
Sbjct: 47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILN 149 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g227400 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=mRNA; length=303bpback to top protein sequence of LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=100bpback to top mRNA from alignment at Chr_4-CM003374.1:32075031..32075333- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=mRNA; length=303bp; location=Sequence derived from: Chr_4-CM003374.1:32075031..32075333- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32075031..32075333- >LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g227400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g227400; organism=Vigna angularis; type=CDS; length=303bp; location=Sequence derived from: Chr_4-CM003374.1:32075031..32075333- (Vigna angularisback to top |