LR48_mrnaVigan04g236500
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MYBS3_ORYSJ (Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.113e-33 Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = 1 Query: 7 IARKCSYCGKLGHNSRTCKSPLGHGDLKLFGVQL-DIXXXXXXXXXXXXXXXXALTNHFFSSSPSFRDENQNSDAFLLTANTLL----SRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHS 465
+ R+CS+C GHNSRTC + +K+FGV+L D S S+++ S SA + +SP+ + + A ++ + S +D KKGV WTEEEH+ FLLGLQKLGKG+WRGIS++FV +RTP QVASHAQKYF+RQS+ T K + S
Sbjct: 1 MTRRCSHCSHNGHNSRTCP----NRGVKIFGVRLTDGSIRKSASMGNLSLLSSAAGSTSGGASPADGPDAAPTAADGYASDDFVQGSSSATRDRKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRRSS 154
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: M5162_ARATH (Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g61620 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.050e-29 Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 7 IARKCSYCGKLGHNSRTCKSPLGHGDLKLFGVQL--------DIXXXXXXXXXXXXXXXXALTNHFFSSSP--SFRDENQNSDAFLLTANTLLSRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHSRTLFHV 483
+A+ CS+CG GHN+RTC + + +KLFGV + ++++ S + + A S P + D +SD + + + + KKG WTEEEH+ FL+GL KLGKG+WRGI+KSFV TRTP QVASHAQKYF+R N K K +LF +
Sbjct: 8 VAKTCSHCGHNGHNARTCLNGVNKASVKLFGVNISSDPIRPPEVTALRKSLSLGNLDALLANDESNGSGDPIAAVDDTGYHSDGQIHSKKGKTA--HEKKKGKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQVASHAQKYFIRL--NVNDKRKRRASLFDI 172
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: KUA1_ARATH (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.623e-29 Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 7 IARKCSYCGKLGHNSRTCKSPLGHGDLKLFGVQL---DIXXXXXXXXXXXXXXXXALTNHFFSSSPS--------FRDENQNSDAFLLTANTLLSRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHS 465
+ R+CS+C GHNSRTC + +KLFGV+L I S+S + + S++P + S+ F+ +++ R KKG WTEEEH++FLLGLQKLGKG+WRGIS+++V TRTP QVASHAQKYF+RQS+ + K + S
Sbjct: 1 MTRRCSHCNHNGHNSRTCP----NRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSNTPGSPGDVPDHVAGDGYASEDFVAGSSSSRER----KKGTPWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSS 156
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MYBS2_ORYSJ (Transcription factor MYBS2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS2 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.427e-24 Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 259 RIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHSRTLFHV 483
++Q+ KKGV WTEEEHK FL GL++LGKG+WRGISK+FV +RT QVASHAQKYFLRQ++ K K +LF V
Sbjct: 91 KVQERKKGVPWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKYFLRQTNPG--KKKRRASLFDV 163
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MYBS2_ORYSI (Transcription factor MYBS2 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.427e-24 Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 259 RIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHSRTLFHV 483
++Q+ KKGV WTEEEHK FL GL++LGKG+WRGISK+FV +RT QVASHAQKYFLRQ++ K K +LF V
Sbjct: 91 KVQERKKGVPWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKYFLRQTNPG--KKKRRASLFDV 163
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.032e-24 Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1 Query: 265 QDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYF 423
++ K+GV WTEEEHK+FLLGLQK+GKG+WRGIS++FVKTRTP QVASHAQKYF
Sbjct: 89 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.325e-23 Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1 Query: 265 QDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQ 432
Q+ KKGV WTEEEHK+FL+GL+K GKG+WR IS++FV TRTP QVASHAQKYF+RQ
Sbjct: 126 QERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 181
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: SRM1_ARATH (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.593e-22 Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1 Query: 265 QDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHSRTLFHV 483
Q+ +KG+AWTE+EH++FLLGL K GKG+WR IS++FV TRTP QVASHAQKYF+R N+ +K + ++ +
Sbjct: 112 QERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL--NSMNKDRRRSSIHDI 182
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MYBS1_ORYSJ (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.098e-21 Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 202 RDENQNSDAFLLTANTLLSRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLR 429
RDE + + Q+ +KG+ WTEEEH++FLLGL K GKG+WR IS++FV +RTP QVASHAQKYF+R
Sbjct: 115 RDERKGGGGGYDGGKSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIR 190
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Match: MYBS1_ORYSI (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.098e-21 Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 202 RDENQNSDAFLLTANTLLSRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLR 429
RDE + + Q+ +KG+ WTEEEH++FLLGL K GKG+WR IS++FV +RTP QVASHAQKYF+R
Sbjct: 115 RDERKGGGGGYDGGKSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIR 190 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g236500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g236500; organism=Vigna angularis; type=mRNA; length=1891bpback to top protein sequence of LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=201bpback to top mRNA from alignment at Chr_4-CM003374.1:32899688..32901578- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g236500; organism=Vigna angularis; type=mRNA; length=1891bp; location=Sequence derived from: Chr_4-CM003374.1:32899688..32901578- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32899688..32901578- >LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g236500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g236500; organism=Vigna angularis; type=CDS; length=606bp; location=Sequence derived from: Chr_4-CM003374.1:32899688..32901578- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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