LR48_mrnaVigan10g096000

Transcript Overview
NameLR48_mrnaVigan10g096000
Unique NameLR48_mrnaVigan10g096000_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1448
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:11761780..11763227 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR261Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR277Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL099Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0745Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0918Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1230Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR342Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR353Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0434Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0455Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR314Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR319Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR285Pisum sativum Cameor genome v1aPisum sativum
aspsR296Pisum sativum Cameor genome v1aPisum sativum
aspvR315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR262Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR292Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR302Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR316Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR195Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR252Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR324Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR334Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR241Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR250Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR248Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g147240.1Pisum sativum Cameor genome v1aPisum sativum
Cr_10117.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g153300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.3g069240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014658901.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G185600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_007121Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr07.1291Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg3148.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.3g083360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_027333372.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_03739Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_08543.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g096000gene-LR48_Vigan10g096000_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096000LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763225..11763227LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763225..11763227Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763113..11763227LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763113..11763227Vigna angularisexon
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762445..11762629LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762445..11762629Vigna angularisexon
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762075..11762179LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762075..11762179Vigna angularisexon
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761977LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761977Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762630..11763112LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762630..11763112Vigna angularisintron
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762180..11762444LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762180..11762444Vigna angularisintron
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761978..11762074LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761978..11762074Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS15807CDS15807_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761782LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761782Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: GSDA_ARATH (Guanosine deaminase OS=Arabidopsis thaliana OX=3702 GN=GSDA PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.387e-76
Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 1 
Query:   64 ENKISVETLNRIEEHFTEDRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIVM 588
            +  ISV +     +    D ++ FLT AVEEAYK V+ GDG P+GAVIV N+E+VASCHNMV + TDPTAHAE+TAIREAC+KLN++EL++CEIYASCEPCPMC+GAI  S+ K++VYGA+AEAA+A+G +  +ADAL+ +  Y+K ++EIKKA+G+ A IAEQVF+NTK+K  +
Sbjct:   10 DGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRL 184
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=guaD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.522e-29
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:  133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVN 507
            FL  AV  A + V  G G P+GAVIV++  I+A   N V  + DPTAHAE+TAIR+AC+ L   +L DC +Y SCEPCPMC GAI +++ K V Y A    A   G +        DS  Y++++
Sbjct:    6 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFD--------DSFIYKEID 122
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=tadA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.010e-26
Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 1 
Query:  133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIV 585
            FL +A+ EA +A E G+  P GA+IV+  EI++  HN V    DPTAHAE+ AI+EACR+LN   L  CE+Y + EPC MC  A++ S+ +KV++ A  +    V    +V + L + +   +V  E    E +  +++E  F+  ++ I+
Sbjct:    6 FLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGV---VSVFNILDEPTLNHRVKWEYYPLEEASELLSE-FFKKLRNNII 151
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_STAAM (tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=tadA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.008e-25
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:  133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTK 573
            F+TLA+EEA KA + G+  P GA+I ++DE++A  HN+      PTAHAE  AI  A + L    L  C +Y + EPC MC G I+ S+  +VVYGA        G   ++ + LQ S+F  +  ++    + + + +    F+N +
Sbjct:    7 FMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG---GCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 149
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_BACSU (tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=tadA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.981e-21
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:  121 RENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSF 492
            ++ +++  A++EA KA E G+  P GAV+V N EI+A  HN+        AHAE+  I EAC+ L    L    +Y + EPCPMC GA++ S+ +KVV+GA        G    + + LQ+  F
Sbjct:    3 QDELYMKEAIKEAKKAEEKGE-VPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKG---GCSGTLMNLLQEERF 122
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_BUCAP (tRNA-specific adenosine deaminase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=tadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.236e-20
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:  118 DRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGA 423
            +R++ ++ +A++ AY A E G+  P GA++V  ++I+ +  N V    D TAHAEI A+REA R +    L +  +Y + +PC MC GAI+ S+ K++V+GA
Sbjct:    4 NRDSYWMKIALKYAYYAEENGE-VPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGA 104
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_SHIFL (tRNA-specific adenosine deaminase OS=Shigella flexneri OX=623 GN=tadA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
            P GAV+V N+ ++    N  +GR+ DPTAHAEI A+R+    +    L D  +Y + EPC MC GA++ S+  +VV+GAR         ++  A +L D   +  +N  ++  EG +A
Sbjct:   29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECOLI (tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12) OX=83333 GN=tadA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
            P GAV+V N+ ++    N  +GR+ DPTAHAEI A+R+    +    L D  +Y + EPC MC GA++ S+  +VV+GAR         ++  A +L D   +  +N  ++  EG +A
Sbjct:   29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECOL6 (tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=tadA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
            P GAV+V N+ ++    N  +GR+ DPTAHAEI A+R+    +    L D  +Y + EPC MC GA++ S+  +VV+GAR         ++  A +L D   +  +N  ++  EG +A
Sbjct:   29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
[Close]
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECO57 (tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 OX=83334 GN=tadA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
            P GAV+V N+ ++    N  +GR+ DPTAHAEI A+R+    +    L D  +Y + EPC MC GA++ S+  +VV+GAR         ++  A +L D   +  +N  ++  EG +A
Sbjct:   29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
GSDA_ARATH3.387e-7660.00Guanosine deaminase OS=Arabidopsis thaliana OX=370... [more]
GUAD_BACSU9.522e-2944.80Guanine deaminase OS=Bacillus subtilis (strain 168... [more]
TADA_AQUAE5.010e-2637.09tRNA-specific adenosine deaminase OS=Aquifex aeoli... [more]
TADA_STAAM5.008e-2535.37tRNA-specific adenosine deaminase OS=Staphylococcu... [more]
TADA_BACSU2.981e-2137.90tRNA-specific adenosine deaminase OS=Bacillus subt... [more]
TADA_BUCAP8.236e-2039.22tRNA-specific adenosine deaminase OS=Buchnera aphi... [more]
TADA_SHIFL6.489e-1835.59tRNA-specific adenosine deaminase OS=Shigella flex... [more]
TADA_ECOLI6.489e-1835.59tRNA-specific adenosine deaminase OS=Escherichia c... [more]
TADA_ECOL66.558e-1835.59tRNA-specific adenosine deaminase OS=Escherichia c... [more]
TADA_ECO576.558e-1835.59tRNA-specific adenosine deaminase OS=Escherichia c... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableGENE3D3.40.140.10coord: 40..196
e-value: 1.5E-45
score: 156.7
NoneNo IPR availableCDDcd01285nucleoside_deaminasecoord: 46..154
e-value: 4.98492E-44
score: 140.445
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 43..140
e-value: 7.6E-24
score: 83.4
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 40..162
score: 25.365
IPR016192APOBEC/CMP deaminase, zinc-bindingPROSITEPS00903CYT_DCMP_DEAMINASES_1coord: 92..129
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 36..153

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bp
ATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTA
TAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTG
AAGAGCACTTTACTGGTATGTGTGAGAATAGCGTCAATCTAAAGTATTAT
AGAATTTTAATTATATATATATATATATATGTGTGTGTGTGTGTGTATGT
ATGAACTGTAAACACAAGCTCTACATTTCCAAGGGAATAGGTCTAGTTTC
TCTGCACTTCTCTTCTTCTAAGCGCTTTTTACGATCACTCTCAATTATTC
TTGACATCTTTTTCATCTGATCCTAATACCATATGATGAAGGGTGTTGCT
ACTGCTTCCAATGGTAAAATCATTCATAATTATAACTTCTTGTAGTTTTG
TTATTCCCTTGTGCAGTTTTGTCCATCTTCCGTTGATGTTAAGTGTGTTC
AATTAAGTAATGTTAATTTGTCACACTATATGGAGGCAGAATAGATCGCG
CTTTGATTATGCATTAAATTTGTCCCATAATGTGTGTTCTTATGACACTT
TGATTATGTAATTTGCGTTATATTCTCTACTGACATATGTTGCTACAGAG
GATAGAGAAAACATGTTCCTCACGTTAGCAGTTGAAGAAGCATATAAAGC
GGTTGAAACTGGCGATGGTTACCCATACGGCGCAGTTATTGTTCGAAATG
ATGAAATAGTTGCAAGCTGTCATAACATGGTTGGAAGAAACACTGATCCC
ACTGCTCATGCTGAGATTACTGCTATAAGAGAGGTTTAGTTAACACTTGT
TATATTTTCCGTCTTGAATTTCACTGTTAAAAGAGCATCATGCATCTACA
ATATCTATTTTGCTGCTTCATTTCTCAAACCATATTAGCTTTTCTACTTA
GAAAGTGGAAGGGAGGGATAGATCGGTTGAGTTTAAAAGTTCGGTTAACA
AAATATAACATTTGCCCATTAAACAAAATGTATTACTTTTTCTACTTATT
ATGTTCGATATAATTAACCCATTTTGGATCTTATGATATCATGTGAAGGC
TTGTCGAAAGCTGAATCAAGTTGAACTTGCTGACTGTGAGATTTATGCTT
CTTGTGAGCCTTGTCCAATGTGCTATGGTGCAATTCTTTTTTCCAAATTC
AAGGTGACCTCGCCACACTACTCATATTTTCCATTCACGAAATGTTTATA
TAGTTTGTATGAAAATGGTCACAATACTCATTCTGCTCAGACTGGTACAG
AAAGTGGTTTATGGAGCTAGAGCAGAAGCTGCTGTGGCTGTTGGACTTGA
GAGTAACGTTGCTGATGCACTGCAGGACAGTAGCTTTTATGAGAAGGTGA
ACATGGAGATCAAAAAGGCTGAAGGTAGTGTCGCTGTAATTGCGGAACAA
GTATTTGAGAATACCAAAGACAAGATTGTTATGCCCTCAGTTGCTTAA
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protein sequence of LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=200bp
MLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTEDRENMFLTLAV
EEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIRE
ACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVG
LESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIVMPSVA
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mRNA from alignment at Chr_10-CM003380.1:11761780..11763227-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularis
ATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTA
TAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTG
AAGAGCACTTTACTGGTATGTGTGAGAATAGCGTCAATCTAAAGTATTAT
AGAATTTTAATTATATATATATATATATATGTGTGTGTGTGTGTGTATGT
ATGAACTGTAAACACAAGCTCTACATTTCCAAGGGAATAGGTCTAGTTTC
TCTGCACTTCTCTTCTTCTAAGCGCTTTTTACGATCACTCTCAATTATTC
TTGACATCTTTTTCATCTGATCCTAATACCATATGATGAAGGGTGTTGCT
ACTGCTTCCAATGGTAAAATCATTCATAATTATAACTTCTTGTAGTTTTG
TTATTCCCTTGTGCAGTTTTGTCCATCTTCCGTTGATGTTAAGTGTGTTC
AATTAAGTAATGTTAATTTGTCACACTATATGGAGGCAGAATAGATCGCG
CTTTGATTATGCATTAAATTTGTCCCATAATGTGTGTTCTTATGACACTT
TGATTATGTAATTTGCGTTATATTCTCTACTGACATATGTTGCTACAGAG
GATAGAGAAAACATGTTCCTCACGTTAGCAGTTGAAGAAGCATATAAAGC
GGTTGAAACTGGCGATGGTTACCCATACGGCGCAGTTATTGTTCGAAATG
ATGAAATAGTTGCAAGCTGTCATAACATGGTTGGAAGAAACACTGATCCC
ACTGCTCATGCTGAGATTACTGCTATAAGAGAGGTTTAGTTAACACTTGT
TATATTTTCCGTCTTGAATTTCACTGTTAAAAGAGCATCATGCATCTACA
ATATCTATTTTGCTGCTTCATTTCTCAAACCATATTAGCTTTTCTACTTA
GAAAGTGGAAGGGAGGGATAGATCGGTTGAGTTTAAAAGTTCGGTTAACA
AAATATAACATTTGCCCATTAAACAAAATGTATTACTTTTTCTACTTATT
ATGTTCGATATAATTAACCCATTTTGGATCTTATGATATCATGTGAAGGC
TTGTCGAAAGCTGAATCAAGTTGAACTTGCTGACTGTGAGATTTATGCTT
CTTGTGAGCCTTGTCCAATGTGCTATGGTGCAATTCTTTTTTCCAAATTC
AAGGTGACCTCGCCACACTACTCATATTTTCCATTCACGAAATGTTTATA
TAGTTTGTATGAAAATGGTCACAATACTCATTCTGCTCAGACTGGTACAG
AAAGTGGTTTATGGAGCTAGAGCAGAAGCTGCTGTGGCTGTTGGACTTGA
GAGTAACGTTGCTGATGCACTGCAGGACAGTAGCTTTTATGAGAAGGTGA
ACATGGAGATCAAAAAGGCTGAAGGTAGTGTCGCTGTAATTGCGGAACAA
GTATTTGAGAATACCAAAGACAAGATTGTTATGCCCTCAGTTGCTTAA
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Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11761780..11763227-

>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=CDS; length=603bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularis
ATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTA
TAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTG
AAGAGCACTTTACTGAGGATAGAGAAAACATGTTCCTCACGTTAGCAGTT
GAAGAAGCATATAAAGCGGTTGAAACTGGCGATGGTTACCCATACGGCGC
AGTTATTGTTCGAAATGATGAAATAGTTGCAAGCTGTCATAACATGGTTG
GAAGAAACACTGATCCCACTGCTCATGCTGAGATTACTGCTATAAGAGAG
GCTTGTCGAAAGCTGAATCAAGTTGAACTTGCTGACTGTGAGATTTATGC
TTCTTGTGAGCCTTGTCCAATGTGCTATGGTGCAATTCTTTTTTCCAAAT
TCAAGAAAGTGGTTTATGGAGCTAGAGCAGAAGCTGCTGTGGCTGTTGGA
CTTGAGAGTAACGTTGCTGATGCACTGCAGGACAGTAGCTTTTATGAGAA
GGTGAACATGGAGATCAAAAAGGCTGAAGGTAGTGTCGCTGTAATTGCGG
AACAAGTATTTGAGAATACCAAAGACAAGATTGTTATGCCCTCAGTTGCT
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR016193Cytidine_deaminase-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0016787hydrolase activity
GO:0003824catalytic activity