LR48_mrnaVigan10g096000
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: GSDA_ARATH (Guanosine deaminase OS=Arabidopsis thaliana OX=3702 GN=GSDA PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 3.387e-76 Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 1 Query: 64 ENKISVETLNRIEEHFTEDRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIVM 588
+ ISV + + D ++ FLT AVEEAYK V+ GDG P+GAVIV N+E+VASCHNMV + TDPTAHAE+TAIREAC+KLN++EL++CEIYASCEPCPMC+GAI S+ K++VYGA+AEAA+A+G + +ADAL+ + Y+K ++EIKKA+G+ A IAEQVF+NTK+K +
Sbjct: 10 DGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRL 184
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=guaD PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.522e-29 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1 Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVN 507
FL AV A + V G G P+GAVIV++ I+A N V + DPTAHAE+TAIR+AC+ L +L DC +Y SCEPCPMC GAI +++ K V Y A A G + DS Y++++
Sbjct: 6 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFD--------DSFIYKEID 122
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=tadA PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.010e-26 Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 1 Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIV 585
FL +A+ EA +A E G+ P GA+IV+ EI++ HN V DPTAHAE+ AI+EACR+LN L CE+Y + EPC MC A++ S+ +KV++ A + V +V + L + + +V E E + +++E F+ ++ I+
Sbjct: 6 FLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGV---VSVFNILDEPTLNHRVKWEYYPLEEASELLSE-FFKKLRNNII 151
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_STAAM (tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=tadA PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.008e-25 Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 1 Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTK 573
F+TLA+EEA KA + G+ P GA+I ++DE++A HN+ PTAHAE AI A + L L C +Y + EPC MC G I+ S+ +VVYGA G ++ + LQ S+F + ++ + + + + F+N +
Sbjct: 7 FMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG---GCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 149
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_BACSU (tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=tadA PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.981e-21 Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 121 RENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSF 492
++ +++ A++EA KA E G+ P GAV+V N EI+A HN+ AHAE+ I EAC+ L L +Y + EPCPMC GA++ S+ +KVV+GA G + + LQ+ F
Sbjct: 3 QDELYMKEAIKEAKKAEEKGE-VPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKG---GCSGTLMNLLQEERF 122
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_BUCAP (tRNA-specific adenosine deaminase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=tadA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 8.236e-20 Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 118 DRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGA 423
+R++ ++ +A++ AY A E G+ P GA++V ++I+ + N V D TAHAEI A+REA R + L + +Y + +PC MC GAI+ S+ K++V+GA
Sbjct: 4 NRDSYWMKIALKYAYYAEENGE-VPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGA 104
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_SHIFL (tRNA-specific adenosine deaminase OS=Shigella flexneri OX=623 GN=tadA PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18 Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECOLI (tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12) OX=83333 GN=tadA PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18 Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECOL6 (tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=tadA PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18 Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match: TADA_ECO57 (tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 OX=83334 GN=tadA PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18 Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bpback to top protein sequence of LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 >LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=200bpback to top mRNA from alignment at Chr_10-CM003380.1:11761780..11763227- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11761780..11763227- >LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=CDS; length=603bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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