Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan10g096000 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-protein Vigna angularis polypeptide LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 Vigna angularis polypeptide
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763225..11763227 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763225..11763227 Vigna angularis start_codon
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763113..11763227 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11763113..11763227 Vigna angularis exon LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762445..11762629 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762445..11762629 Vigna angularis exon LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762075..11762179 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762075..11762179 Vigna angularis exon LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761977 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761977 Vigna angularis exon
The following intron feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762630..11763112 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762630..11763112 Vigna angularis intron LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762180..11762444 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11762180..11762444 Vigna angularis intron LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761978..11762074 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761978..11762074 Vigna angularis intron
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CDS15807 CDS15807_Va_Jingnong6_v1.1 Vigna angularis CDS
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761782 LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11761780..11761782 Vigna angularis stop_codon
Homology
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
GSDA_ARATH (Guanosine deaminase OS=Arabidopsis thaliana OX=3702 GN=GSDA PE=1 SV=1)
HSP 1 Score: 229.95 bits (585), Expect = 3.387e-76
Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 1
Query: 64 ENKISVETLNRIEEHFTEDRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIVM 588
+ ISV + + D ++ FLT AVEEAYK V+ GDG P+GAVIV N+E+VASCHNMV + TDPTAHAE+TAIREAC+KLN++EL++CEIYASCEPCPMC+GAI S+ K++VYGA+AEAA+A+G + +ADAL+ + Y+K ++EIKKA+G+ A IAEQVF+NTK+K +
Sbjct: 10 DGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRL 184
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=guaD PE=1 SV=1)
HSP 1 Score: 108.227 bits (269), Expect = 9.522e-29
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVN 507
FL AV A + V G G P+GAVIV++ I+A N V + DPTAHAE+TAIR+AC+ L +L DC +Y SCEPCPMC GAI +++ K V Y A A G + DS Y++++
Sbjct: 6 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFD--------DSFIYKEID 122
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=tadA PE=1 SV=1)
HSP 1 Score: 100.908 bits (250), Expect = 5.010e-26
Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTKDKIV 585
FL +A+ EA +A E G+ P GA+IV+ EI++ HN V DPTAHAE+ AI+EACR+LN L CE+Y + EPC MC A++ S+ +KV++ A + V +V + L + + +V E E + +++E F+ ++ I+
Sbjct: 6 FLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGV---VSVFNILDEPTLNHRVKWEYYPLEEASELLSE-FFKKLRNNII 151
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_STAAM (tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=tadA PE=1 SV=1)
HSP 1 Score: 98.5969 bits (244), Expect = 5.008e-25
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 133 FLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVAVIAEQVFENTK 573
F+TLA+EEA KA + G+ P GA+I ++DE++A HN+ PTAHAE AI A + L L C +Y + EPC MC G I+ S+ +VVYGA G ++ + LQ S+F + ++ + + + + F+N +
Sbjct: 7 FMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG---GCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 149
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_BACSU (tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) OX=224308 GN=tadA PE=1 SV=1)
HSP 1 Score: 88.9669 bits (219), Expect = 2.981e-21
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 121 RENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSF 492
++ +++ A++EA KA E G+ P GAV+V N EI+A HN+ AHAE+ I EAC+ L L +Y + EPCPMC GA++ S+ +KVV+GA G + + LQ+ F
Sbjct: 3 QDELYMKEAIKEAKKAEEKGE-VPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKG---GCSGTLMNLLQEERF 122
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_BUCAP (tRNA-specific adenosine deaminase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=tadA PE=3 SV=1)
HSP 1 Score: 84.7297 bits (208), Expect = 8.236e-20
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 118 DRENMFLTLAVEEAYKAVETGDGYPYGAVIVRNDEIVASCHNMVGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGA 423
+R++ ++ +A++ AY A E G+ P GA++V ++I+ + N V D TAHAEI A+REA R + L + +Y + +PC MC GAI+ S+ K++V+GA
Sbjct: 4 NRDSYWMKIALKYAYYAEENGE-VPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGA 104
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_SHIFL (tRNA-specific adenosine deaminase OS=Shigella flexneri OX=623 GN=tadA PE=3 SV=2)
HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_ECOLI (tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12) OX=83333 GN=tadA PE=1 SV=2)
HSP 1 Score: 80.4925 bits (197), Expect = 6.489e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_ECOL6 (tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=tadA PE=3 SV=2)
HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Match:
TADA_ECO57 (tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 OX=83334 GN=tadA PE=3 SV=2)
HSP 1 Score: 80.4925 bits (197), Expect = 6.558e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 190 PYGAVIVRNDEIVASCHNM-VGRNTDPTAHAEITAIREACRKLNQVELADCEIYASCEPCPMCYGAILFSKFKKVVYGARAEAAVAVGLESNVADALQDSSFYEKVNMEIKKAEGSVA 540
P GAV+V N+ ++ N +GR+ DPTAHAEI A+R+ + L D +Y + EPC MC GA++ S+ +VV+GAR ++ A +L D + +N ++ EG +A
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRH-DPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDA-------KTGAAGSLMDVLHHPGMNHRVEITEGILA 138
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g096000 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1 )
Total hits: 10
200 400 600 800 1000 1200 1400 Expect = 3.39e-76 / Id = 60.00 Expect = 9.52e-29 / Id = 44.80 Expect = 5.01e-26 / Id = 37.09 Expect = 5.01e-25 / Id = 35.37 Expect = 2.98e-21 / Id = 37.90 Expect = 8.24e-20 / Id = 39.22 Expect = 6.49e-18 / Id = 35.59 Expect = 6.49e-18 / Id = 35.59 Expect = 6.56e-18 / Id = 35.59 Expect = 6.56e-18 / Id = 35.59 Sequence GSDA_ARATH GUAD_BACSU TADA_AQUAE TADA_STAAM TADA_BACSU TADA_BUCAP TADA_SHIFL TADA_ECOLI TADA_ECOL6 TADA_ECO57
Match Name E-value Identity Description
GSDA_ARATH 3.387e-76 60.00 Guanosine deaminase OS=Arabidopsis thaliana OX=370... [more] GUAD_BACSU 9.522e-29 44.80 Guanine deaminase OS=Bacillus subtilis (strain 168... [more] TADA_AQUAE 5.010e-26 37.09 tRNA-specific adenosine deaminase OS=Aquifex aeoli... [more] TADA_STAAM 5.008e-25 35.37 tRNA-specific adenosine deaminase OS=Staphylococcu... [more] TADA_BACSU 2.981e-21 37.90 tRNA-specific adenosine deaminase OS=Bacillus subt... [more] TADA_BUCAP 8.236e-20 39.22 tRNA-specific adenosine deaminase OS=Buchnera aphi... [more] TADA_SHIFL 6.489e-18 35.59 tRNA-specific adenosine deaminase OS=Shigella flex... [more] TADA_ECOLI 6.489e-18 35.59 tRNA-specific adenosine deaminase OS=Escherichia c... [more] TADA_ECOL6 6.558e-18 35.59 tRNA-specific adenosine deaminase OS=Escherichia c... [more] TADA_ECO57 6.558e-18 35.59 tRNA-specific adenosine deaminase OS=Escherichia c... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bp back to top protein sequence of LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1
>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=200bp back to top mRNA from alignment at Chr_10-CM003380.1:11761780..11763227-
Legend: polypeptide start_codon exon CDS intron stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=mRNA; length=1448bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularisATG TTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTA
TAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTG
AAGAGCACTTTACTGGTATGTGTGAGAATAGCGTCAATCTAAAGTATTAT
AGAATTTTAATTATATATATATATATATATGTGTGTGTGTGTGTGTATGT
ATGAACTGTAAACACAAGCTCTACATTTCCAAGGGAATAGGTCTAGTTTC
TCTGCACTTCTCTTCTTCTAAGCGCTTTTTACGATCACTCTCAATTATTC
TTGACATCTTTTTCATCTGATCCTAATACCATATGATGAAGGGTGTTGCT
ACTGCTTCCAATGGTAAAATCATTCATAATTATAACTTCTTGTAGTTTTG
TTATTCCCTTGTGCAGTTTTGTCCATCTTCCGTTGATGTTAAGTGTGTTC
AATTAAGTAATGTTAATTTGTCACACTATATGGAGGCAGAATAGATCGCG
CTTTGATTATGCATTAAATTTGTCCCATAATGTGTGTTCTTATGACACTT
TGATTATGTAATTTGCGTTATATTCTCTACTGACATATGTTGCTACAG AG
GATAGAGAAAACATGTTCCTCACGTTAGCAGTTGAAGAAGCATATAAAGC
GGTTGAAACTGGCGATGGTTACCCATACGGCGCAGTTATTGTTCGAAATG
ATGAAATAGTTGCAAGCTGTCATAACATGGTTGGAAGAAACACTGATCCC
ACTGCTCATGCTGAGATTACTGCTATAAGAGAG GTTTAGTTAACACTTGT
TATATTTTCCGTCTTGAATTTCACTGTTAAAAGAGCATCATGCATCTACA
ATATCTATTTTGCTGCTTCATTTCTCAAACCATATTAGCTTTTCTACTTA
GAAAGTGGAAGGGAGGGATAGATCGGTTGAGTTTAAAAGTTCGGTTAACA
AAATATAACATTTGCCCATTAAACAAAATGTATTACTTTTTCTACTTATT
ATGTTCGATATAATTAACCCATTTTGGATCTTATGATATCATGTGAAG GC
TTGTCGAAAGCTGAATCAAGTTGAACTTGCTGACTGTGAGATTTATGCTT
CTTGTGAGCCTTGTCCAATGTGCTATGGTGCAATTCTTTTTTCCAAATTC
AAG GTGACCTCGCCACACTACTCATATTTTCCATTCACGAAATGTTTATA
TAGTTTGTATGAAAATGGTCACAATACTCATTCTGCTCAGACTGGTACAG
AAAGTGGTTTATGGAGCTAGAGCAGAAGCTGCTGTGGCTGTTGGACTTGA
GAGTAACGTTGCTGATGCACTGCAGGACAGTAGCTTTTATGAGAAGGTGA
ACATGGAGATCAAAAAGGCTGAAGGTAGTGTCGCTGTAATTGCGGAACAA
GTATTTGAGAATACCAAAGACAAGATTGTTATGCCCTCAGTTGCTTAA back to top Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11761780..11763227-
>LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096000; organism=Vigna angularis; type=CDS; length=603bp; location=Sequence derived from: Chr_10-CM003380.1:11761780..11763227- (Vigna angularis back to top
