Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan09g027800 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-protein Vigna angularis polypeptide LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 Vigna angularis polypeptide
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162730..3162732 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162730..3162732 Vigna angularis start_codon
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162730..3162765 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162730..3162765 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3163375..3163516 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3163375..3163516 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164307..3164454 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164307..3164454 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164530..3164605 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164530..3164605 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164693..3164804 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164693..3164804 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164918..3165009 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164918..3165009 Vigna angularis exon LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165173..3165217 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165173..3165217 Vigna angularis exon
The following intron feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162766..3163374 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3162766..3163374 Vigna angularis intron LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3163517..3164306 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3163517..3164306 Vigna angularis intron LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164455..3164529 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164455..3164529 Vigna angularis intron LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164606..3164692 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164606..3164692 Vigna angularis intron LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164805..3164917 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3164805..3164917 Vigna angularis intron LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165010..3165172 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165010..3165172 Vigna angularis intron
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CDS19847 CDS19847_Va_Jingnong6_v1.1 Vigna angularis CDS
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165215..3165217 LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3165215..3165217 Vigna angularis stop_codon
Homology
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_NEMVE (Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis OX=45351 GN=v1g247787 PE=3 SV=1)
HSP 1 Score: 105.531 bits (262), Expect = 8.464e-27
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEP-KYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAIL 513
E K+ L +++ +++ YL+ YKE+ E F +GT QP L+ +D R +I +G+ +A+ +T +L DIL+ N+ L F L +EL+ + A+EFAQ + G+E +Y+E+LE MALLA+ PE+SP LL RQ+VA LN AIL
Sbjct: 11 EWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGT-QPTAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAIL 178
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_CHICK (Glucose-induced degradation protein 8 homolog OS=Gallus gallus OX=9031 GN=GID8 PE=2 SV=1)
HSP 1 Score: 102.449 bits (254), Expect = 1.368e-25
Identity = 61/173 (35.26%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ L I D++ ++++YL+ +KE+ E F +G +P+ LE +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQT+L G+E + + ++E +ALLA+ PE+SP LL++ RQ+V +N+A+L + N
Sbjct: 14 EWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYEN 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_BOVIN (Glucose-induced degradation protein 8 homolog OS=Bos taurus OX=9913 GN=GID8 PE=2 SV=1)
HSP 1 Score: 101.293 bits (251), Expect = 4.668e-25
Identity = 60/173 (34.68%), Postives = 101/173 (58.38%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ L + D++ ++++YL+ +KE+ E F +G +P+ LE +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQT+L G+E + + ++E +ALLA+ PE SP LL++ RQ+V +N+A+L + N
Sbjct: 14 EWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYEN 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_MOUSE (Glucose-induced degradation protein 8 homolog OS=Mus musculus OX=10090 GN=Gid8 PE=1 SV=1)
HSP 1 Score: 100.908 bits (250), Expect = 6.146e-25
Identity = 60/173 (34.68%), Postives = 101/173 (58.38%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ L + D++ ++++YL+ +KE+ E F +G +P+ LE +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQT+L G+E + + ++E +ALLA+ PE+SP LL + RQ+V +N+A+L + N
Sbjct: 14 EWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYEN 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8B_DANRE (Glucose-induced degradation protein 8-B homolog OS=Danio rerio OX=7955 GN=gid8b PE=2 SV=2)
HSP 1 Score: 99.3673 bits (246), Expect = 2.009e-24
Identity = 59/173 (34.10%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ + I D++ ++++YL+ +KE+ E F +G +P+ L+ +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQT+L G+E + + ++E +ALLA+ PE+SP LL++ RQ+V +N+A+L + N
Sbjct: 15 EWMEKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYEN 186
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_HUMAN (Glucose-induced degradation protein 8 homolog OS=Homo sapiens OX=9606 GN=GID8 PE=1 SV=1)
HSP 1 Score: 99.3673 bits (246), Expect = 2.029e-24
Identity = 60/173 (34.68%), Postives = 100/173 (57.80%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ L + D++ ++++YL+ +KE+ E F +G +P+ LE +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQT+L G+E + + ++E +ALLA+ PE+SP LL RQ+V +N+A+L + N
Sbjct: 14 EWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYEN 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8A_DANRE (Glucose-induced degradation protein 8-A homolog OS=Danio rerio OX=7955 GN=gid8a PE=2 SV=1)
HSP 1 Score: 97.8265 bits (242), Expect = 9.675e-24
Identity = 58/173 (33.53%), Postives = 101/173 (58.38%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKY-MEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLN 525
E K+ + I D++ ++++YL+ +KE+ E F +G + D L+ +D+R +I L+G +AI L L ++L+ N+ L F L H +EL+ R+ ALEFAQ++L G+E + + ++E +ALLA+ PE+SP LL++ RQ+V +N+A+L + N
Sbjct: 14 EWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD-LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYEN 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_ARATH (Protein GID8 homolog OS=Arabidopsis thaliana OX=3702 GN=GID8 PE=1 SV=1)
HSP 1 Score: 87.8113 bits (216), Expect = 6.795e-20
Identity = 59/187 (31.55%), Postives = 99/187 (52.94%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPK-YMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAIL---AHLNLPRYTAMERLI 558
E K+ + + D++++V+++L+ Y E+ E F +GTK D L + R + GN AIE L +IL+ N +L F L +EL+ K EALEFAQ +L P G+E + ++E+LE +ALL + + P+ LL L +R + A +N AIL +H P+ ++ +++
Sbjct: 29 EWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEID-LATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKDPKLPSLLKML 214
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
GID8_DICDI (Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279265 PE=3 SV=2)
HSP 1 Score: 85.5001 bits (210), Expect = 3.458e-19
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 1
Query: 10 EVSTKVETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKE-PKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAIL 513
E K+ + I+ +D++ +V++YL+ Y+E+ F + T+ D L + R I G+ K IE+ L +IL+ N L F L +EL+ EAL+FAQ +L P G+E K++E+LE ++LL +++ KSP+ LL RQ+ A LN AIL
Sbjct: 18 EWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVD-LASIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL 185
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Match:
RANBM_ARATH (Ran-binding protein M homolog OS=Arabidopsis thaliana OX=3702 GN=RANBPM PE=1 SV=1)
HSP 1 Score: 68.9366 bits (167), Expect = 2.239e-12
Identity = 58/222 (26.13%), Postives = 111/222 (50.00%), Query Frame = 1
Query: 25 VETLAINDNDIHSVVLSYLIHNCYKESVESFITSTGTKQPADYLED------------MDKRKRIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLH-FVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILA------------HLNLPRYTAMERLIQQATVV---RQCLSQEAGK 606
+E ++I N + +V +YL+H Y+E++++F +T P +++ + +RK + G A+ ++L I++ +K + LL F+ELV K E + + + +L F + + +ED ALLAY++PE+S +++ L R+ VAD++N AIL+ HL + +E+L++Q TV R+ L+ + G+
Sbjct: 238 IEKISIPPNIGYGLVKTYLLHYGYEETLDAFNLATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEIDTALAELQKLYPQIVQDDKSVVCFLLHCQKFIELVRVGKLEEGVNYGRLELAKFVGLTGFQDIVEDCFALLAYEKPEESSVWYFLEDSQRELVADAVNAAILSTNPNKKDVQRSCHLQ----SHLEKLLRQLTVCCLERRSLNGDQGE 455
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g027800 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1 )
Total hits: 10
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 8.46e-27 / Id = 36.69 Expect = 1.37e-25 / Id = 35.26 Expect = 4.67e-25 / Id = 34.68 Expect = 6.15e-25 / Id = 34.68 Expect = 2.01e-24 / Id = 34.10 Expect = 2.03e-24 / Id = 34.68 Expect = 9.67e-24 / Id = 33.53 Expect = 6.80e-20 / Id = 31.55 Expect = 3.46e-19 / Id = 33.73 Expect = 2.24e-12 / Id = 26.13 Sequence GID8_NEMVE GID8_CHICK GID8_BOVIN GID8_MOUSE GID8B_DANRE GID8_HUMAN GID8A_DANRE GID8_ARATH GID8_DICDI RANBM_ARATH
Match Name E-value Identity Description
GID8_NEMVE 8.464e-27 36.69 Glucose-induced degradation protein 8 homolog OS=N... [more] GID8_CHICK 1.368e-25 35.26 Glucose-induced degradation protein 8 homolog OS=G... [more] GID8_BOVIN 4.668e-25 34.68 Glucose-induced degradation protein 8 homolog OS=B... [more] GID8_MOUSE 6.146e-25 34.68 Glucose-induced degradation protein 8 homolog OS=M... [more] GID8B_DANRE 2.009e-24 34.10 Glucose-induced degradation protein 8-B homolog OS... [more] GID8_HUMAN 2.029e-24 34.68 Glucose-induced degradation protein 8 homolog OS=H... [more] GID8A_DANRE 9.675e-24 33.53 Glucose-induced degradation protein 8-A homolog OS... [more] GID8_ARATH 6.795e-20 31.55 Protein GID8 homolog OS=Arabidopsis thaliana OX=37... [more] GID8_DICDI 3.458e-19 33.73 Glucose-induced degradation protein 8 homolog OS=D... [more] RANBM_ARATH 2.239e-12 26.13 Ran-binding protein M homolog OS=Arabidopsis thali... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g027800; organism=Vigna angularis; type=mRNA; length=2488bp back to top protein sequence of LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1
>LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=216bp back to top mRNA from alignment at Chr_9-CM003379.1:3162730..3165217+
Legend: polypeptide start_codon exon CDS intron stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g027800; organism=Vigna angularis; type=mRNA; length=2488bp; location=Sequence derived from: Chr_9-CM003379.1:3162730..3165217+ (Vigna angularisATG CTTATTGAGGTCTCCACTAAAGTGGAGACCCTGGTGAGTAGTTGTCT
TGTGgatattaataatatgttttgttttgcgATAAATGATTTCTTACTCT
CTGGGAAACTCTTCGAATAATTAGTTTCTGAAAGATATTTCCCAACCCTA
ATTTCTCATGGTAGAAAATTGAACAGAAGAGGGATTGGAAAcacaaatgt
aatatttattctGCCCTGTATACTCTATATTTCTCTCACACGAATTACTA
CTAATATGCGTTTTGATTCTGGTGATTCAAAACTTTTCCctcaaatttat
gtttaaaagaGAATGTAATTAATCCTCTGTGGGTTATTTGAATGGATAAG
GCGTGATTTTGCATGACTGTGTCTTTCAAACCGTCACTCTTTTCTTTGGG
ATGAAATGAAATATTGTTCCTCGTTAAGTGTCTTTGCGTCTAGAGACTTC
ACCTGTCTTGGATTTGGATTTGGGCGTCATCCCCTCCTcctaatttttat
atacaaaagaaaaagaattgagCTAAGATTGAACCTTGTAGTATGTTTTG
GTGGGTTTCTATTTTTGAATGGTTGATTTTCTGGTTCCATTGATTCTCTT
ACTGAAATTAATCCATCATTTTTTCTTGGTTACTTGAATTTACAG GCTAT
AAATGATAATGACATCCACAGTGTTGTTCTGTCATATCTCATACACAATT
GCTACAAAGAATCGGTAGAATCATTCATTACTAGCACTGGGACAAAGCAG
CCTGCAGATTATTTGGAGGACATGGACAAAAGGAAAA GTAGGTTTATGGT
TATTTTTTGGTACACAAAATTCcttcaagatttttttttgggtGTTTTCT
GGTTATACTTTATTTGCTTGCTTATCCTAGAATTTTGTGTGTACACTAAG
TGTTCATTCATAACAACttttaagaaattttcaaaTCTAAATGCACGTTG
TCAACCCCAACACGAGGGATGCTGAACTGTTGTTCGCTTTAATACTACTT
AAAACATCTGTGATTCTTATTCTTTAGACGACTTTTGACTTCTGTCTTGA
AATACATTTGAATTTTGATTAGACCTTTTTTGTTTATGGTGTCAGTTCCT
GAAACTTGGAGTGAATCTGGTTTTGGTTCCTTAAATTTAAAAGAGTGAAT
CTGGTTCATTTTAATCActcaaatttagaaaaaaagtggttttagtccct
aaacaCTAAATTAGAGGAACTAAAAACAACCTTAAACAAACATTTTATGT
CTTTCAAATTTAGTATTTAGgcataaaactatatttttgaaaattttgag
gGGCTAAAAGAACTTTTGTAAGTTTGGAGGATTACAATGAGATTTGTCCT
AaattttagagactaaaaacatatttaagtctACTTTCTTTCTTGCAGAT
CTTTTTTACTATGTAAAGACATCTCTATTGAGCTTCGATTGACattttaa
gatatattactGTGCCACAAACTGTGCTGGGAAATTCTCCACACACTTAC
GAAGATAATTAGGCTTTTTATTggatcttattattattaatgaaaacacT
TCatgataaatttcattttttctttag gAATCTTTCACTTTGCACTAGAG
GGAAATGCACTCAAGGCCATTGAGCTTACTGAGCAGCTAGCACAGGATAT
TTTAGAGAAGAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTG
TTGAGCTTGTGTGCTCCAGGAAATG GTaagcataatttaattttgtctcT
CAAAGAACCTGTAGACTTCctactttcatatattttcattttattggcAG
CACAGAAGCTTTGGAGTTTGCTCAGACCAAGCTGGGCCCTTTTGGAAAGG
AGCCCAAATATATGGAAAAACTTGAA GTATGTCTGGATTTCACATAGCTT
TTTTGTGATGTATGTGTGTGACCGTGTGTGCTTAAGATTGAATTTTTGTT
ATGGTACCGGCAG GATTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGA
AATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAGCAGGTTGCA
GATAGTTTGAATCGGGCTATTCTTG GTTGGTTAACTTGTTATCTGCatct
ttctttaatatattttgttgcaAATCATGGTGCTTTTTCTTATCCAtgtt
taatgtgattttttctGTGATGGTTGGGTAATTGGCAG CACACTTGAATC
TTCCCAGATACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTT
AGACAATGCTTAAGTCAAGAAGCGGGCAAG GTAATGGGTGTTGCTTATGA
AATTTAAGAATTGATGCAAAGTTCTGTCTAACCTGCAAAATCTTGGATTG
CTCATCTCTTCTTGGACCAGTAAAAGGAGATGTAGCCAGCTACTATAGTA
TGCAATATTGGTGTTCGAGCTGATTCTTTCATTATCATTGCAG GATGGGC
CTCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA back to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3162730..3165217+
>LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g027800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g027800; organism=Vigna angularis; type=CDS; length=651bp; location=Sequence derived from: Chr_9-CM003379.1:3162730..3165217+ (Vigna angularis back to top
