LR48_mrnaVigan09g028500

Transcript Overview
NameLR48_mrnaVigan09g028500
Unique NameLR48_mrnaVigan09g028500_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1505
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:3251310..3252814 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR186Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR201Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR205Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR213Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR224Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR231Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL010Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL074Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR106Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR110Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR113Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0307Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0416Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0540Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0819Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0822Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0971Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR252Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR273Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR309Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0293Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0374Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR223Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR249Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR272Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR281Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR191Pisum sativum Cameor genome v1aPisum sativum
aspsR203Pisum sativum Cameor genome v1aPisum sativum
aspsR216Pisum sativum Cameor genome v1aPisum sativum
aspsR219Pisum sativum Cameor genome v1aPisum sativum
aspsR232Pisum sativum Cameor genome v1aPisum sativum
aspvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR179Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR200Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR251Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR139Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR157Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR188Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR198Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR207Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR217Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR226Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR191Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR200Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR212Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR221Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR148Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR153Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR157Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR164Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR174Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR185Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR206Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR238Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR241Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR251Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR133Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR136Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR142Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR183Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR173Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR188Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR194Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR200Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr09.1268Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_08664.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_17316Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg35135.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr03.2722Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G009800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_12364Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.3g234280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014647955.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat6g005600.1Pisum sativum Cameor genome v1aPisum sativum
Cr_12742.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_17055Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.3g191160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun09g250100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_033659Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.2g204760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014645281.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun08g010700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg55900.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_07760.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_14539.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun03g262500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.4g115760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.003G258100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.2g165840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat4g096720.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr08.618Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.4g088160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.009G013700.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg17110.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_027334549.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004499154.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014652804.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_10767Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_08171Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat5g014640.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_31032Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan01g181500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan07g282100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan04g250300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g028500gene-LR48_Vigan09g028500_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g028500LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3252812..3252814LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3252812..3252814Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3252220..3252814LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3252220..3252814Vigna angularisexon
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251310..3251671LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251310..3251671Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251672..3252219LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251672..3252219Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS19853CDS19853_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251310..3251312LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3251310..3251312Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.881e-71
Identity = 167/370 (45.14%), Postives = 209/370 (56.49%), Query Frame = 1
Query:    1 MAGFFSLGGTRRGGPQNKEEGEVEKGDXXXXXXXXXXXXXXXXEEIYN--KGFEIWPESY-------------QPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSL---CVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHR----------------------DTQLVSAPQPIAGLELG-HFPPEVSTSAVFRCVRVSAV--DASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHLGLIXXXXXXX----XXXXXVGGNNP----FEP-SLYPASLNAFMSGTQFFHPPRS 954
            MAGFF LGG       NK++    + D + H+ +++N L    +EIYN  KGFEIWP  Y             Q  +AP   +N+++FG+ PS  + ++ N    SL    VSD     G TV R GG     MNCQDCGNQAKKDC H+RCRTCCK+RGF CQTHVKSTWVPAAKRRER  QLASLQ       E    +  R                      +T++V+A    +GLE+  H PPEV++ A+FRCVRVS++  D  D+  AYQT+VNIGGH+FKGILYDQGPE              +  HL L+ + AT T        TV GNN      +P SLYPA LN+F++GT FF PPRS
Sbjct:    1 MAGFFYLGGRDNNSNNNKQDHH--QVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQQQEHQQQQQQQQHASAP---ANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPG-GFTVTRQGG-----MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNA-NSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------------DNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFIAGTPFFTPPRS 346          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.274e-63
Identity = 163/374 (43.58%), Postives = 201/374 (53.74%), Query Frame = 1
Query:    1 MAGFFSLGGTRRGGPQNKEEGEVEKGDXXXXXXXXXXXXXXXXEEIYN--KGFEIWPESY-------QPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSL---CVSDE----STRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRD------------------------------TQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESS---YTSAVTEGSSGGEPRHLGLIXX--XXXXXXXXXXVGGNN-PFEP-SLYPAS---LNAFMS-GTQFFHPPR 951
            MAG F LGG       NK++   EK     + +  NN L    +EIYN  KGFEI+P  Y          AAP NL   ++FG+ PS  N ++      SL    VSD     S+  G TV R G      MNCQDCGNQAKKDC H+RCRTCCK+RGF CQTHVKSTWV AAKRRERQ QLA            +P +  RD                              T++V+A    +GLE  H PPE+S+ AVFRC+RVS++D  DE+ AYQT+V+IGGHVFKGILYDQGP S    Y+S++   +S     HL L+ +  +A  T   T V  NN   +P SLY A     NAF++ GT FF   R
Sbjct:    1 MAGLFYLGGR----DHNKQDHHQEKD---HNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQNHAAAPTNL---YSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN-----MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAV-----------LPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASS--SGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETS--HQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAFVAGGTPFFASSR 344          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.670e-57
Identity = 132/265 (49.81%), Postives = 163/265 (61.51%), Query Frame = 1
Query:  217 FGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYH-----RDTQLVSAPQP---IAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHLGLIXXXXXXXXXXXXVGGNNPFEPSL-----------YPASLNAFMSGTQFFHPPRS 954
             GVGPS R              S   T  G  +M   G+GS G +CQDCGNQ+KKDC+H+RCRTCCK+RG  C THVKSTWVPAAKRRERQQQL++ Q PQQ    ++PKR       R T +     P    +GLE+G+FPPEVS+SAVFRCVRVS+VD  +E+ AY+T+V+IGGHVFKG+LYDQGP           SSGG  + L LITA  +A++++  V  NN    S            YP  +N FM+GT FF   RS
Sbjct:   89 LGVGPSNR--------------SLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG-GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGP-------AERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHFFSNSRS 331          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.462e-54
Identity = 141/303 (46.53%), Postives = 187/303 (61.72%), Query Frame = 1
Query:  151 FEIWPES------YQPQAAPQNLSNYFA---FGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF-RPENIPKRYHRD-----TQLVSAPQPI-AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES------SYTSAVTEGSSGGEPRHLGLIXXXXXXXXXXXX-------VGGNNP-----FEP-SLYPASLNAFMSGTQFFHPPRS 954
             E+W         +Q Q   Q L  Y +    GVGPS  N   ++ E  S   +  +    +      G GS G++CQDCGNQAKKDC+H+RCRTCCK+RGF+C THV+STWVPAAKRRERQQQLA++Q   Q  R E++PKR+  +     + LV    P  +GLE+G+FP EVS+SAVFRCVRVS+V+  +E+ AYQT+V+IGGH+FKGILYD GP S      +  +A    S GG  + L LITA +   ATA++       +G ++       +P +LYP  +N FM+GTQFF  PRS
Sbjct:   69 LELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGE-TSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTPINTFMAGTQFFPNPRS 370          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.630e-45
Identity = 90/156 (57.69%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXX---------XXXXFRPENIPKRYHRDTQL------VSAPQPIAGLELGH--FPPEVSTSAVFRCVRVSAV-DASDEQCAYQTSVNIGGHVFKGILYDQGPE 759
            ++C+DCGNQAKKDCTH+RCRTCCK+RGF C THV+STW+P A+RRERQQQL                     +IPKR HRD  L         P   AGLE+G   FP EVS+ A+FRCV++S V D  D Q AYQT+VNIGGH+FKGILYDQGPE
Sbjct:   92 ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKR-HRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS3_ARATH (Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=SRS3 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.787e-41
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  343 GMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQG 753
            G  C+DCGNQAKKDC ++RCRTCCK++ F CQTH+KSTWVPA +R   + Q   L +       +IPK      Q+ + P        GHFP E+S+ A FRCV+VS++D   EQ AYQT+VNIGGHVF+GIL+DQG
Sbjct:    6 GRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKHQSQPLST-------SIPK----GVQIHTTP--------GHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQG 123          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS4_ARATH (Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.268e-40
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELG--HFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES 762
            ++CQ+CGNQAKK CTH RCRTCCK+ G  C THV+STW+P AKRRERQQQL +  S        + K  +RD     A    +GLE+G   FP EVS+ A+FRCVR+S  D  + Q AYQT+V I GH+FKGILY+QGPE+
Sbjct:   70 ISCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTGGSGRVGK--YRDINQ-HATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPEN 207          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.464e-32
Identity = 73/160 (45.62%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  352 CQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF---------RPENIPKRYHRDTQLVS-------APQPI--------AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPE 759
            CQDCGNQAKK+C   RCRTCCK+RGF C THVKSTWV AA+RRERQ                     +P  +  +  +  Q  S        PQ           G     +P +V  +AVF+CVRV+AV+  D++ AYQ  V IGGHVFKG LYDQG E
Sbjct:  112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLE 271          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS8_ARATH (Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.000e-21
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:  346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF-RPENIPKRYHRD 561
            ++CQD GNQAKKDC+H+RCRTCCK+RGF+C THV+STWVPA KRRERQQQLA++Q   Q  R E++PKR HR+
Sbjct:   50 VSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRERQQQLATVQPQTQLPRGESVPKR-HRE 121          
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.838e-20
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  352 CQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELGH---FPPEVSTSAVFRCVRVSAVDASDE-QCAYQTSVNIGGHVFKGILYDQG 753
            C+DCGN+AKK+C   RCRTCCK+RG+ C THVKSTW+P++  R               +   I K+   +  L+  P   +  E G     P ++   AVF+  RV+A+  +++ +  YQ +V I GH+FKG L+  G
Sbjct:   41 CRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSSPSERK------KKLKIDKQSSPNVSLL--PTTTSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG 170          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
SRS5_ARATH9.881e-7145.14Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thal... [more]
SRS7_ARATH1.274e-6343.58Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thal... [more]
SHI_ARATH4.670e-5749.81Protein SHORT INTERNODES OS=Arabidopsis thaliana O... [more]
SRS1_ARATH1.462e-5446.53Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thal... [more]
SRS2_ARATH1.630e-4557.69Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thal... [more]
SRS3_ARATH3.787e-4153.28Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thal... [more]
SRS4_ARATH3.268e-4056.03Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thal... [more]
LRP1_ARATH6.464e-3245.63Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis t... [more]
SRS8_ARATH2.000e-2169.86Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thal... [more]
SRS6_ARATH1.838e-2037.68Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thal... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006511SHORT INTERNODES, C-terminalTIGRFAMTIGR01624TIGR01624coord: 204..252
e-value: 2.3E-25
score: 86.3
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMTIGR01623TIGR01623coord: 117..159
e-value: 6.6E-26
score: 88.0
NoneNo IPR availablePFAMPF05142DUF702coord: 115..253
e-value: 1.1E-61
score: 207.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..29

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=mRNA; length=1505bp
ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAA
CAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACA
ACAGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGG
TTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTT
GAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGA
GCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGA
TTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAA
CTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGAT
GCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAG
AGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGC
TTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGAT
ATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGTTAA
CTTTCATATTACATTACAGTATCATCCTCACTTCAAATAAATAAAAAATG
GTTTAATTAATTGTCTCTCTTCTGTATATAAATGTAACTTTCTTGAGATA
TGGATTTCAACCTTGTAACTTTTTGAACTAGTCTGCTACCGCTACTACAC
ACAGATGATGATGCACTGAGATCTCGATGTAACACTCATTGTAGTCTTTT
ATTCTATGACTAGATACAACTGACTAGTCCATAGTATTTGACTGAAAGTA
TGAAAATGCAACGACGCTCCTTGGTCACCCATCACATTTTTCTCTTGTTT
TTTCCGCCCCTCTCTTTCTTCTTTTTTCCATATTCCATCACTGTTTCTAA
GTAAAACTGACGAAATTATTTGAGCTCCATCCATGTGAGACTTTGCCAAG
ACTTTTTTTTTTTTTTTTCCTTTTTTCCTCTTGTGATGATAGCGGAAAGT
AGAGGGCACACACAAGTAATTAGTATGGTTTAGTTTTGTTTTTTGGATGA
TTAATTCTTTGATTTAATTAATGTGTGATTTCTTTGTACTTAGGGTTAGA
GCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTG
TGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACC
TCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGG
TCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGGTG
AACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACA
GCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGC
TTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGT
CCTAA
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protein sequence of LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=318bp
MAGFFSLGGTRRGGPQNKEEGEVEKGDNNIHNNNRNNLLLFRNEEIYNKG
FEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTR
FGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVK
STWVPAAKRRERQQQLASLQSPQQFRPENIPKRYHRDTQLVSAPQPIAGL
ELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQ
GPESSYTSAVTEGSSGGEPRHLGLITAAATATATATTVGGNNPFEPSLYP
ASLNAFMSGTQFFHPPRS
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mRNA from alignment at Chr_9-CM003379.1:3251310..3252814-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=mRNA; length=1505bp; location=Sequence derived from: Chr_9-CM003379.1:3251310..3252814- (Vigna angularis
ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAA CAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACA ACAGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGG TTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTT GAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGA GCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGA TTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAA CTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGAT GCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAG AGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGC TTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGAT ATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGTTAA CTTTCATATTACATTACAGTATCATCCTCACTTCAAATAAATAAAAAATG GTTTAATTAATTGTCTCTCTTCTGTATATAAATGTAACTTTCTTGAGATA TGGATTTCAACCTTGTAACTTTTTGAACTAGTCTGCTACCGCTACTACAC ACAGATGATGATGCACTGAGATCTCGATGTAACACTCATTGTAGTCTTTT ATTCTATGACTAGATACAACTGACTAGTCCATAGTATTTGACTGAAAGTA TGAAAATGCAACGACGCTCCTTGGTCACCCATCACATTTTTCTCTTGTTT TTTCCGCCCCTCTCTTTCTTCTTTTTTCCATATTCCATCACTGTTTCTAA GTAAAACTGACGAAATTATTTGAGCTCCATCCATGTGAGACTTTGCCAAG ACTTTTTTTTTTTTTTTTCCTTTTTTCCTCTTGTGATGATAGCGGAAAGT AGAGGGCACACACAAGTAATTAGTATGGTTTAGTTTTGTTTTTTGGATGA TTAATTCTTTGATTTAATTAATGTGTGATTTCTTTGTACTTAGGGTTAGA GCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTG TGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACC TCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGG TCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGGTG AACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACA GCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGC TTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGT CCTAA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3251310..3252814-

>LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=CDS; length=957bp; location=Sequence derived from: Chr_9-CM003379.1:3251310..3252814- (Vigna angularis
ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAA
CAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACA
ACAGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGG
TTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTT
GAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGA
GCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGA
TTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAA
CTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGAT
GCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAG
AGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGC
TTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGAT
ATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGGTTA
GAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTG
TGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAA
CCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAA
GGTCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGG
TGAACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCA
CAGCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCC
GCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAG
GTCCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006511SHI_C
IPR006510Znf_LRP1