LR48_mrnaVigan09g028500
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 9.881e-71 Identity = 167/370 (45.14%), Postives = 209/370 (56.49%), Query Frame = 1 Query: 1 MAGFFSLGGTRRGGPQNKEEGEVEKGDXXXXXXXXXXXXXXXXEEIYN--KGFEIWPESY-------------QPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSL---CVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHR----------------------DTQLVSAPQPIAGLELG-HFPPEVSTSAVFRCVRVSAV--DASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHLGLIXXXXXXX----XXXXXVGGNNP----FEP-SLYPASLNAFMSGTQFFHPPRS 954
MAGFF LGG NK++ + D + H+ +++N L +EIYN KGFEIWP Y Q +AP +N+++FG+ PS + ++ N SL VSD G TV R GG MNCQDCGNQAKKDC H+RCRTCCK+RGF CQTHVKSTWVPAAKRRER QLASLQ E + R +T++V+A +GLE+ H PPEV++ A+FRCVRVS++ D D+ AYQT+VNIGGH+FKGILYDQGPE + HL L+ + AT T TV GNN +P SLYPA LN+F++GT FF PPRS
Sbjct: 1 MAGFFYLGGRDNNSNNNKQDHH--QVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQQQEHQQQQQQQQHASAP---ANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPG-GFTVTRQGG-----MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNA-NSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------------DNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFIAGTPFFTPPRS 346
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.274e-63 Identity = 163/374 (43.58%), Postives = 201/374 (53.74%), Query Frame = 1 Query: 1 MAGFFSLGGTRRGGPQNKEEGEVEKGDXXXXXXXXXXXXXXXXEEIYN--KGFEIWPESY-------QPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSL---CVSDE----STRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRD------------------------------TQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESS---YTSAVTEGSSGGEPRHLGLIXX--XXXXXXXXXXVGGNN-PFEP-SLYPAS---LNAFMS-GTQFFHPPR 951
MAG F LGG NK++ EK + + NN L +EIYN KGFEI+P Y AAP NL ++FG+ PS N ++ SL VSD S+ G TV R G MNCQDCGNQAKKDC H+RCRTCCK+RGF CQTHVKSTWV AAKRRERQ QLA +P + RD T++V+A +GLE H PPE+S+ AVFRC+RVS++D DE+ AYQT+V+IGGHVFKGILYDQGP S Y+S++ +S HL L+ + +A T T V NN +P SLY A NAF++ GT FF R
Sbjct: 1 MAGLFYLGGR----DHNKQDHHQEKD---HNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQNHAAAPTNL---YSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN-----MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAV-----------LPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASS--SGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETS--HQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAFVAGGTPFFASSR 344
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 4.670e-57 Identity = 132/265 (49.81%), Postives = 163/265 (61.51%), Query Frame = 1 Query: 217 FGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYH-----RDTQLVSAPQP---IAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHLGLIXXXXXXXXXXXXVGGNNPFEPSL-----------YPASLNAFMSGTQFFHPPRS 954
GVGPS R S T G +M G+GS G +CQDCGNQ+KKDC+H+RCRTCCK+RG C THVKSTWVPAAKRRERQQQL++ Q PQQ ++PKR R T + P +GLE+G+FPPEVS+SAVFRCVRVS+VD +E+ AY+T+V+IGGHVFKG+LYDQGP SSGG + L LITA +A++++ V NN S YP +N FM+GT FF RS
Sbjct: 89 LGVGPSNR--------------SLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG-GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGP-------AERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHFFSNSRS 331
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 1.462e-54 Identity = 141/303 (46.53%), Postives = 187/303 (61.72%), Query Frame = 1 Query: 151 FEIWPES------YQPQAAPQNLSNYFA---FGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF-RPENIPKRYHRD-----TQLVSAPQPI-AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES------SYTSAVTEGSSGGEPRHLGLIXXXXXXXXXXXX-------VGGNNP-----FEP-SLYPASLNAFMSGTQFFHPPRS 954
E+W +Q Q Q L Y + GVGPS N ++ E S + + + G GS G++CQDCGNQAKKDC+H+RCRTCCK+RGF+C THV+STWVPAAKRRERQQQLA++Q Q R E++PKR+ + + LV P +GLE+G+FP EVS+SAVFRCVRVS+V+ +E+ AYQT+V+IGGH+FKGILYD GP S + +A S GG + L LITA + ATA++ +G ++ +P +LYP +N FM+GTQFF PRS
Sbjct: 69 LELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGE-TSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTPINTFMAGTQFFPNPRS 370
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.630e-45 Identity = 90/156 (57.69%), Postives = 106/156 (67.95%), Query Frame = 1 Query: 346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXX---------XXXXFRPENIPKRYHRDTQL------VSAPQPIAGLELGH--FPPEVSTSAVFRCVRVSAV-DASDEQCAYQTSVNIGGHVFKGILYDQGPE 759
++C+DCGNQAKKDCTH+RCRTCCK+RGF C THV+STW+P A+RRERQQQL +IPKR HRD L P AGLE+G FP EVS+ A+FRCV++S V D D Q AYQT+VNIGGH+FKGILYDQGPE
Sbjct: 92 ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKR-HRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS3_ARATH (Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=SRS3 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 3.787e-41 Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 1 Query: 343 GMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQG 753
G C+DCGNQAKKDC ++RCRTCCK++ F CQTH+KSTWVPA +R + Q L + +IPK Q+ + P GHFP E+S+ A FRCV+VS++D EQ AYQT+VNIGGHVF+GIL+DQG
Sbjct: 6 GRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKHQSQPLST-------SIPK----GVQIHTTP--------GHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQG 123
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS4_ARATH (Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 3.268e-40 Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1 Query: 346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELG--HFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES 762
++CQ+CGNQAKK CTH RCRTCCK+ G C THV+STW+P AKRRERQQQL + S + K +RD A +GLE+G FP EVS+ A+FRCVR+S D + Q AYQT+V I GH+FKGILY+QGPE+
Sbjct: 70 ISCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTGGSGRVGK--YRDINQ-HATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPEN 207
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.464e-32 Identity = 73/160 (45.62%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 352 CQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF---------RPENIPKRYHRDTQLVS-------APQPI--------AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPE 759
CQDCGNQAKK+C RCRTCCK+RGF C THVKSTWV AA+RRERQ +P + + + Q S PQ G +P +V +AVF+CVRV+AV+ D++ AYQ V IGGHVFKG LYDQG E
Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLE 271
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS8_ARATH (Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.000e-21 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1 Query: 346 MNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXF-RPENIPKRYHRD 561
++CQD GNQAKKDC+H+RCRTCCK+RGF+C THV+STWVPA KRRERQQQLA++Q Q R E++PKR HR+
Sbjct: 50 VSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRERQQQLATVQPQTQLPRGESVPKR-HRE 121
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.838e-20 Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 352 CQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERXXXXXXXXXXXXFRPENIPKRYHRDTQLVSAPQPIAGLELGH---FPPEVSTSAVFRCVRVSAVDASDE-QCAYQTSVNIGGHVFKGILYDQG 753
C+DCGN+AKK+C RCRTCCK+RG+ C THVKSTW+P++ R + I K+ + L+ P + E G P ++ AVF+ RV+A+ +++ + YQ +V I GH+FKG L+ G
Sbjct: 41 CRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSSPSERK------KKLKIDKQSSPNVSLL--PTTTSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG 170 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g028500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=mRNA; length=1505bpback to top protein sequence of LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=318bpback to top mRNA from alignment at Chr_9-CM003379.1:3251310..3252814- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=mRNA; length=1505bp; location=Sequence derived from: Chr_9-CM003379.1:3251310..3252814- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3251310..3252814- >LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028500; organism=Vigna angularis; type=CDS; length=957bp; location=Sequence derived from: Chr_9-CM003379.1:3251310..3252814- (Vigna angularisback to top |