LR48_mrnaVigan09g028900
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 3.033e-59 Identity = 133/333 (39.94%), Postives = 179/333 (53.75%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHF--PLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYXXXXXXX---------XXXXXXXKKNPVLDTXXXXXXXXXXXX--XXXXGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSH-STFDCSKNGDE-----MLSVFGEGN--------------MVSFSSG--GIWVPQAPPSAVAYW--EQMGEQNGYREG--------------------RKGSVRSSLGDDNNFVVPQMSPPS-NVSKKSRFLW 825 MKI+CDVC++ +AS+FCTADEA++C CDH+VHHANKLASKH RFSL +PS+ + PLCDICQ+K+A +FCQQDRAILCK+CD SIH+ NE TK H RFLLTG+K S ++ Y +S SS S ++ P L L + GG+ NQ + S+ISEYL++T+PG EDFLDS T+ SK+GD+ + + N VS S GIWVPQ P + + + + + N + G ++G DD F VPQ++PP + +KK R W Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQ--WGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDGVLPYMEPEDDNNTKRNNNNNNNNNNNTVSLPSKNLGIWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETSPEVVSFAPIQNMKQQGQNNKRWYDDGGFTVPQITPPPLSSNKKFRSFW 331
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.274e-45 Identity = 91/200 (45.50%), Postives = 121/200 (60.50%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYXXXXXXXXXXXXXXKK---------------NPVLDTXXXXXXXXXXXXXXXXGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLD 555 MKI C VC++ +AS+FC ADEAA+C+ CD VH ANKLA KH RFSLT P+ K PLCDIC E+RA +FCQ+DRAILC+ECD+ IH NE TK H+RFLLTG+K S S Y +S+S+S+++ K N V +S + + ++ + SISEYL+ T+PG + ED L+ Sbjct: 1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE 200
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.731e-37 Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSA 327 MKIQCDVC + A++ C ADEAA+C CD +H ANKLASKH R L S K FP CDICQEK AF+FC +DRA+LC++CD SIH N + NH RFL TGIK + ++ Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTS 108
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 4.240e-36 Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAI 330 MKIQC+VC +A++ C ADEAA+C CD ++H ANKLA KH R L+ SA P CDICQE F FC QDRA+LC++CDV+IH+VN H RFLLTGIK +I Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSA-SASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESI 109
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 2.886e-35 Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSA 327 MKIQCDVC + A+L C ADEAA+C CD VH ANKLASKH R L S K FP CDIC EK AF+FC +DRA+LC++CD + H+ N + NH RFL TGI+ + S+ Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTK-FPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSS 108
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana OX=3702 GN=BBX23 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.551e-29 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSL-----THPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAI 330 MKIQC+VC + +A + C +DEA +C CD +VH ANKL +HHR +L + +A PLCDICQE++ + FC +DRA+LC +CD +IH+ N +H RFLL+G++ S ++ Sbjct: 1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQVSDQSL 111
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX19_ARATH (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.463e-23 Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLL 300 M+I CD C A +FC ADEAA+C CD +VH NKLAS+H R L PS + P CDIC+ AF +C+ D + LC +CD+ +H + T H RFLL Sbjct: 1 MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPS--NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HGRFLL 96
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: BBX18_ARATH (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 1.312e-21 Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 1 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLL 300 M+I CD C A +FC ADEAA+C CD +VH NKLAS+H R L PS + P CDIC+ AF +C+ D + LC +CD+ +H + T H RFLL Sbjct: 1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPS--NAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLL 96
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.619e-19 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 13 CDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLT 303 CD C A+LFC AD A +C DCD ++H ANKLAS+H R LC++C++ A V C+ D A LC CD IHS N L++ H R +T Sbjct: 8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVW----------LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 2.674e-17 Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 1 Query: 13 CDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSA 327 CD C A+L+C D A +C CD +VH ANKLAS+H R +C++C++ A V C+ D A LC CD IHS N L + H R +T S S+ Sbjct: 6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVW----------MCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSS 100 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g028900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028900; organism=Vigna angularis; type=mRNA; length=1085bpback to top protein sequence of LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=275bpback to top mRNA from alignment at Chr_9-CM003379.1:3290928..3292012+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028900; organism=Vigna angularis; type=mRNA; length=1085bp; location=Sequence derived from: Chr_9-CM003379.1:3290928..3292012+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3290928..3292012+ >LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g028900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g028900; organism=Vigna angularis; type=CDS; length=828bp; location=Sequence derived from: Chr_9-CM003379.1:3290928..3292012+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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