Transcript Overview
| Name | LR48_mrnaVigan09g030400 |
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| Unique Name | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna angularis (Adzuki bean, red mung bean, azuki) |
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| Sequence length | 1260 |
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| Product | hypothetical protein |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan09g030400 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-protein | Vigna angularis | polypeptide |
| LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 | Vigna angularis | polypeptide |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3434706 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3434706 | Vigna angularis | start_codon |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963 | Vigna angularis | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963 | Vigna angularis | CDS |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3435961..3435963 | LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3435961..3435963 | Vigna angularis | stop_codon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.40.50.150 | | coord: 233..411
e-value: 9.2E-9
score: 36.9 |
| IPR004159 | Putative S-adenosyl-L-methionine-dependent methyltransferase | PFAM | PF03141 | Methyltransf_29 | coord: 260..366
e-value: 5.0E-7
score: 28.6 |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 249..389 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=mRNA; length=1260bp
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA back to topprotein sequence of LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=419bp
MGSVSLKIGDGTARFKSSTVCSSGVNILMIFSVITTNLFALYAFSSSTKD
LHNHHLLHKNFSLISEQVTLILREIDLSQKKLAQMEKDLLGYESIDLSRN
NTSNELKLFLHRHHLPLGKDSKTGITEMVSSVGHSCDKSSDLLYQYMNYK
VSGPCPNDLSVAQKLVLKGCEPLPRRRCFSKTISKVGLLRPFPTSLWEPP
VNNTVNWSGLGCKSFECLKGKKLSRECIGCFDLVNGYENQRFVKSRSKND
FLVDDVLTLGGGGIRIGLDVGGGSGSFGAVMAERNVTVVTTTLNVGAPFS
EFIAARGLFPLYLSLDHRFPFYDNVFDLVRAASGLDGGGRHEKLEFFMFD
IDRVLRPGGLLWLDNFYCVDEEKKRVLTRLIERFGYKKLKWVVGEKVDSL
GSGKSQAVLSAVLQKHVRV back to topmRNA from alignment at Chr_9-CM003379.1:3434704..3435963+ Legend: polypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=mRNA; length=1260bp; location=Sequence derived from: Chr_9-CM003379.1:3434704..3435963+ (Vigna angularis
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA back to topCoding sequence (CDS) from alignment at Chr_9-CM003379.1:3434704..3435963+ >LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=CDS; length=1260bp; location=Sequence derived from: Chr_9-CM003379.1:3434704..3435963+ (Vigna angularis
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004159 | Put_SAM_MeTrfase |
| IPR029063 | SAM-dependent_MTases_sf |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
|
