LR48_mrnaVigan09g030400

Transcript Overview
NameLR48_mrnaVigan09g030400
Unique NameLR48_mrnaVigan09g030400_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1260
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:3434704..3435963 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR186Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR201Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR205Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR213Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR224Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR231Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL010Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL074Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR106Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR113Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0307Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0416Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0540Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0819Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0822Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0971Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR252Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR273Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR309Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0374Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR223Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR249Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR272Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR281Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR191Pisum sativum Cameor genome v1aPisum sativum
aspsR203Pisum sativum Cameor genome v1aPisum sativum
aspsR216Pisum sativum Cameor genome v1aPisum sativum
aspsR219Pisum sativum Cameor genome v1aPisum sativum
aspsR221Pisum sativum Cameor genome v1aPisum sativum
aspsR232Pisum sativum Cameor genome v1aPisum sativum
aspvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR187Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR251Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR139Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR157Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR188Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR198Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR217Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR226Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR191Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR200Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR221Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR148Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR157Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR164Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR174Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR185Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR206Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR238Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR241Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR251Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR136Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR142Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR183Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR173Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR188Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR194Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR200Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr09.1251Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_07772.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014644404.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_12354Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.2g166640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat6g004280.1Pisum sativum Cameor genome v1aPisum sativum
Psat5g014440.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.3g236080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Hedin2.R1.2g205600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g192200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.001G008400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_31041Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr08.629Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014648011.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_10749Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004499177.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg55929.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg35096.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g252200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.009G015500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_08680.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun08g008800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g283400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g030400gene-LR48_Vigan09g030400_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g030400LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3434706LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3434706Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3434704..3435963Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3435961..3435963LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3435961..3435963Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g030400 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 233..411
e-value: 9.2E-9
score: 36.9
IPR004159Putative S-adenosyl-L-methionine-dependent methyltransferasePFAMPF03141Methyltransf_29coord: 260..366
e-value: 5.0E-7
score: 28.6
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 249..389

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=mRNA; length=1260bp
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA
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protein sequence of LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=419bp
MGSVSLKIGDGTARFKSSTVCSSGVNILMIFSVITTNLFALYAFSSSTKD
LHNHHLLHKNFSLISEQVTLILREIDLSQKKLAQMEKDLLGYESIDLSRN
NTSNELKLFLHRHHLPLGKDSKTGITEMVSSVGHSCDKSSDLLYQYMNYK
VSGPCPNDLSVAQKLVLKGCEPLPRRRCFSKTISKVGLLRPFPTSLWEPP
VNNTVNWSGLGCKSFECLKGKKLSRECIGCFDLVNGYENQRFVKSRSKND
FLVDDVLTLGGGGIRIGLDVGGGSGSFGAVMAERNVTVVTTTLNVGAPFS
EFIAARGLFPLYLSLDHRFPFYDNVFDLVRAASGLDGGGRHEKLEFFMFD
IDRVLRPGGLLWLDNFYCVDEEKKRVLTRLIERFGYKKLKWVVGEKVDSL
GSGKSQAVLSAVLQKHVRV
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mRNA from alignment at Chr_9-CM003379.1:3434704..3435963+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=mRNA; length=1260bp; location=Sequence derived from: Chr_9-CM003379.1:3434704..3435963+ (Vigna angularis
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3434704..3435963+

>LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030400; organism=Vigna angularis; type=CDS; length=1260bp; location=Sequence derived from: Chr_9-CM003379.1:3434704..3435963+ (Vigna angularis
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGCACTGCCAGATTCAAAAG
TTCAACCGTGTGTTCCTCCGGAGTTAACATTCTCATGATCTTCTCCGTTA
TCACCACCAACCTCTTTGCCCTGTATGCCTTCTCTTCTTCCACAAAAGAT
CTTCACAACCACCACCTTCTTCACAAAAACTTCTCCCTAATCTCCGAACA
AGTCACCCTCATTCTACGAGAGATCGACTTGTCGCAAAAGAAACTTGCCC
AGATGGAAAAGGACCTCCTCGGCTACGAAAGCATTGACCTTTCCCGAAAT
AACACCTCCAACGAACTCAAACTCTTTCTCCACCGCCACCACCTTCCTCT
GGGCAAAGACTCGAAAACTGGAATCACCGAAATGGTCTCGTCTGTGGGCC
ACTCCTGCGACAAATCCTCGGACTTGTTGTATCAGTACATGAATTACAAG
GTTTCTGGACCCTGCCCCAATGATTTGAGTGTGGCACAGAAACTCGTTCT
GAAAGGGTGTGAGCCTTTACCGAGAAGAAGGTGTTTTTCTAAAACCATTT
CTAAGGTGGGTCTTCTACGCCCTTTTCCCACCTCGCTTTGGGAACCTCCG
GTTAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAGTTTTGAGTG
TTTGAAGGGTAAAAAGTTGAGTAGAGAGTGCATTGGTTGCTTTGATTTGG
TTAATGGGTATGAAAATCAGAGGTTTGTGAAGTCTAGGAGTAAGAATGAT
TTTCTAGTTGATGATGTGTTGACTTTGGGAGGTGGTGGAATTAGGATAGG
GCTTGATGTTGGAGGTGGGTCTGGGTCCTTTGGTGCTGTGATGGCCGAGA
GGAATGTTACTGTGGTTACTACCACTTTGAATGTTGGTGCTCCATTCAGT
GAATTCATTGCTGCAAGAGGACTTTTTCCTCTATATTTGAGCTTGGATCA
TAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTG
GTTTGGATGGTGGGGGGAGGCACGAGAAGTTGGAGTTTTTTATGTTTGAC
ATTGATCGTGTTTTGCGGCCAGGTGGTTTGTTATGGCTTGATAACTTCTA
CTGTGttgatgaagagaagaaaagggtGTTAACCAGGTTGATTGAACGGT
TTGGGTACAAAAAGTTGAAATGGGTTGTGGGAGAAAAGGTTGATAGTCTT
GGATCAGGTAAGTCACAGGCAGTGTTATCAGCAGTGCTTCAGAAGCATGT
TAGAGTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004159Put_SAM_MeTrfase
IPR029063SAM-dependent_MTases_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity