Vfaba.Hedin2.R1.3g080080.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PD66|A0A2K3PD66_TRIPR (DNA-directed RNA polymerase iii subunit rpc4-like protein OS=Trifolium pratense OX=57577 GN=L195_g009871 PE=4 SV=1) HSP 1 Score: 406.371 bits (1043), Expect = 2.794e-140 Identity = 209/292 (71.58%), Postives = 238/292 (81.51%), Query Frame = 0 Query: 5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIA--FGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
DSKP RKVK+ PK PP+RVPKIEVKSE +EED K ++A+A E+LR EN KARMKVEKKV AS++ FGSG QS+ K Y SKTNG E+SAF AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESRAYDE+ ANSA ELGLLEENPEA + FMKLPPV PM+KK + DVK N KRPGG + KL +L+E+P G IGKM+VYKSGKVKLK+G+TLYDVSSGMNC FSQELVAMNAAEK C +IGEI+ LATVTPDIDAALDCL+DLDL
Sbjct: 1 MDSKPSKGRKVKFQPKIPPRRVPKIEVKSEVVEEDIKDTSAKASEILRNLEEN--KARMKVEKKVLASRVGGGFGSGAQSTSFKSYAFHKSESKTNGGENSAFDGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRAYDESKANSAIELGLLEENPEASAFFMKLPPVIPMLKKVQ-DVKENVKRPGGPRGAAKLVRLNELPAGFIGKMLVYKSGKVKLKLGDTLYDVSSGMNCTFSQELVAMNAAEKHCCAIGEINALATVTPDIDAALDCLSDLDL 289
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XYB1|A0A1S2XYB1_CICAR (DNA-directed RNA polymerase III subunit RPC4-like OS=Cicer arietinum OX=3827 GN=LOC101513907 PE=4 SV=1) HSP 1 Score: 404.831 bits (1039), Expect = 1.758e-139 Identity = 206/298 (69.13%), Postives = 239/298 (80.20%), Query Frame = 0 Query: 1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKP----EADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
MD NFDSKPPA RKVK+APKA P++VPKIEVKSE EEDN +AA+AKELLRRF+EN KARMKVEKKVSASQIAFG GG+S K Y SKT+ E+ AF KEY+EPWD+ S+YPI+LPLRKPYSG+PEYL++EEFGEA+ +R YDE+ +NSA ELGLLEENPEA + F+KLPPV PMIK P DVK NSKRP K KLYKL+E+PPGL+GKM+VYKSG VKLK+GNTLYDVSSGM+C F+Q+ AMN AEK CS IGEI+K AT+TPD+DAALDCL DLDL
Sbjct: 1 MDPNFDSKPPAPRKVKFAPKALPRKVPKIEVKSEVAEEDNATAAADAKELLRRFNENAMKARMKVEKKVSASQIAFGFGGESVSRKSYNIPKSESKTSFGENLAFNGVKEKEYQEPWDMNSNYPIALPLRKPYSGDPEYLNEEEFGEAAITRTYDESKSNSAMELGLLEENPEASAFFIKLPPVVPMIKNPAKAGSQDVKENSKRPRVSKGVGKLYKLNELPPGLMGKMLVYKSGAVKLKLGNTLYDVSSGMDCSFAQDYAAMNTAEKHCSIIGEITKHATITPDVDAALDCLKDLDL 298
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|G7I6T0|G7I6T0_MEDTR (Putative DNA-directed RNA polymerase III subunit RPC4 OS=Medicago truncatula OX=3880 GN=11405592 PE=4 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 1.771e-136 Identity = 200/293 (68.26%), Postives = 237/293 (80.89%), Query Frame = 0 Query: 1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG--GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
MD N DSKPP RRK+K+ PKAPP+RVPK+EVKSE IEEDNK + +LL+R +EN RMK EKKV SQIAFG+GGQS+Y K YG GGSK+ E+SAF KEYKEPW+L ++YPI PLRKPYSGNPE LD++EFGE +ESR YDE+AA+SA EL LLEENPEA + FMKLPPV PMIKKP+AD K KRPGG + KL +L+++PPGLIGKM+VYKSGKVKLK+GNTLYDVSSGMNCIF+QE A+N A+K CS++GEI+K ATVTPDIDAALDCL+DL+L
Sbjct: 1 MDLNNDSKPPQRRKLKFQPKAPPRRVPKVEVKSEVIEEDNKDVSKVTMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKS---ENSAFYGVTEKEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVELDLLEENPEASAFFMKLPPVIPMIKKPDADGK--DKRPGGYRGAAKLCRLNDLPPGLIGKMLVYKSGKVKLKLGNTLYDVSSGMNCIFAQEFAAINTAQKFCSALGEINKFATVTPDIDAALDCLSDLNL 288
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|I3SXE3|I3SXE3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 393.275 bits (1009), Expect = 4.188e-135 Identity = 199/293 (67.92%), Postives = 236/293 (80.55%), Query Frame = 0 Query: 1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG--GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
MD N DSKPP RRK+K+ PKAPP+RVPK+EVKSE IEEDNK + +LL+R +EN RMK EKKV SQIAFG+GGQS+Y K YG GGSK+ E+SAF KEYKEPW+L ++YPI PLRKPYSGNPE LD++EFGE +ESR YDE+AA+SA EL LLEENPEA + FMKLPPV PMIKKP+AD K KRPGG + KL +L+++PPGLIGKM+VYKSGKVKLK+GNTLYDVSSGMNCIF+QE A+N A+K CS++GEI+K ATVT DIDAALDCL+DL+L
Sbjct: 1 MDLNNDSKPPQRRKLKFQPKAPPRRVPKVEVKSEVIEEDNKDVSKVTMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKS---ENSAFYGVTEKEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVELDLLEENPEASAFFMKLPPVIPMIKKPDADGK--DKRPGGYRGAAKLCRLNDLPPGLIGKMLVYKSGKVKLKLGNTLYDVSSGMNCIFAQEFAAINTAQKFCSALGEINKFATVTLDIDAALDCLSDLNL 288
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LX09|A0A2Z6LX09_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_33700 PE=4 SV=1) HSP 1 Score: 374.015 bits (959), Expect = 8.527e-128 Identity = 186/261 (71.26%), Postives = 214/261 (81.99%), Query Frame = 0 Query: 34 EAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
E +EED KA++A+A ELLR EN+ KA+M EKKVS S +AFGSG QS+ K YG SKT+G E+SA AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR Y+E+AANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG + L +L+E+P G IGKM+VYKSGKVKLK+G+TLYDVSSGMNCIFSQELVAMN AEK C ++ EISKLATVTPDIDAALDCL+DLDL
Sbjct: 9 EVVEEDIKATSAKANELLRNLEENKVKAKMNFEKKVSTSHVAFGSGAQSTSFKSYGFPKSESKTSGGENSALDGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYNESAANSAVELGLLEENPEASAFFMKLPPVIPMIKKVQ-DVKENVKRPGGPRGAAMLVRLNELPAGFIGKMLVYKSGKVKLKLGDTLYDVSSGMNCIFSQELVAMNTAEKNCCTVAEISKLATVTPDIDAALDCLSDLDL 268
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NJ19|A0A2Z6NJ19_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_88740 PE=4 SV=1) HSP 1 Score: 352.829 bits (904), Expect = 1.072e-119 Identity = 187/294 (63.61%), Postives = 210/294 (71.43%), Query Frame = 0 Query: 1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
MD NFDSKPP R+ E KAR KVEK+VSAS +AFGSG QS+ K YG GSKT+G E+SA AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR YDE+ ANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG + KL +L+E+ G IGKM+VYKSGKVKLK+G+TLYDVSSG+NCI SQELVAMNAAEK C +IGEISKLATVTPDIDAALDCL+DLDL
Sbjct: 1 MDLNFDSKPPKGRQ-------------------------------------------ENKARTKVEKRVSASSVAFGSGAQSTSFKSYGFHKSGSKTSGGENSASDSANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYDESIANSAIELGLLEENPEANAFFMKLPPVIPMIKKVQ-DVKENIKRPGGPRGAAKLVRLNELSAGFIGKMLVYKSGKVKLKLGDTLYDVSSGINCILSQELVAMNAAEKHCCTIGEISKLATVTPDIDAALDCLSDLDL 250
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5NUY3|A0A6A5NUY3_LUPAL (Putative DNA-directed RNA polymerase III subunit RPC4 OS=Lupinus albus OX=3870 GN=Lal_00040734 PE=4 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 7.595e-107 Identity = 164/289 (56.75%), Postives = 209/289 (72.32%), Query Frame = 0 Query: 5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA--DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLND 288
DS+ +RK+K+APKAP R PK EVK+E ++ D+ + +A++LLRRF+EN K R KVEKKVSASQIAFG GG+++ K YG GGS NG++SS KEYKEPWD YS+YP +LP+R+PY+GNPE LD+EEFGEA+ESR YDEN++N+A EL LLEEN E ++LP P IK D NS+ G KN K KL E+P G++GKM+VYKSGK+K+K+G+TLYDVS GMNC F+Q+ VA+N A+K C +IGEISK T+TPDIDA L LND
Sbjct: 1 MDSQNAPQRKLKFAPKAPALRKPKPEVKTEVVDNDD---SVQARDLLRRFNENLMKGRPKVEKKVSASQIAFGDGGEATSVKSYGFAKGGSNINGSQSSTSNAGREKEYKEPWDYYSNYPTTLPVRRPYAGNPETLDEEEFGEAAESRTYDENSSNAAVELDLLEENSENSMFLIQLPATLPTIKGSSGGQDANKNSQPSKGSKNAEKPCKLKELPSGIMGKMLVYKSGKIKMKLGDTLYDVSPGMNCGFAQDAVAVNTAQKHCCTIGEISKHVTITPDIDAVLGQLND 286
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444WNE0|A0A444WNE0_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_Scaffold9g108594 PE=4 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 6.405e-106 Identity = 166/284 (58.45%), Postives = 208/284 (73.24%), Query Frame = 0 Query: 1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA----DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDID 280
MDSN + P R KVK+APKAPP+R PK EVK+E E+ + A +AK+LLRRF+E+ R KVEKKVSASQIAFG GG+++ KPY S +G+++SAF KEYKEPWD YS+YP++LPLR+PYSGNPE LD+EEFGEA+ESR +DEN+ N A ELGLLEENPE ++LP P IK + D +S +P G +VK KL+E+PPGL+GKM+VYKSG +KLK+G+TLYDVS G NC F+Q++ MN AEK C +IGEISK TVTPDID
Sbjct: 1 MDSNRSNNAPGR-KVKFAPKAPPRRAPKKEVKAELAEDHD---AEQAKDLLRRFNESAMNGRHKVEKKVSASQIAFGYGGEATSFKPYRNPS--SGSDNSAFSGVREKEYKEPWDYYSNYPVTLPLRRPYSGNPELLDEEEFGEAAESRTFDENSTNPAKELGLLEENPETSVFLIQLPAALPAIKGSASSGGQDGSESSCKPQGSMKKVKPCKLNELPPGLMGKMLVYKSGAIKLKLGDTLYDVSPGSNCTFAQDVAVMNTAEKHCCAIGEISKRVTVTPDID 278
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371I0F9|A0A371I0F9_MUCPR (DNA-directed RNA polymerase III subunit RPC4 (Fragment) OS=Mucuna pruriens OX=157652 GN=Polr3d PE=4 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 1.281e-104 Identity = 173/295 (58.64%), Postives = 217/295 (73.56%), Query Frame = 0 Query: 5 FDSK--PPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYGG----GSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA----DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDL 289
DSK P RKVK+AP+APP+RVPK EVK+E ++ + A A+AK LLRRF+E+ KA+ KVE+KVSASQIAFG GG+S+ K YGG GS N +++SAF KEYKEPWD YS+YP++LPLR+PYSGNPE LD+ EFG S SR Y+ENA+N A ELGLLEEN EA F+ LPP P+I + +V VNSK PGG K+ K KL+E+P G +GKM+VYKSG +KLK+G+TLYDVS GM C F+Q++VA+N A+K C +IGEISK +TPDIDA LD L+DL
Sbjct: 1 MDSKDAPGIPRKVKFAPRAPPRRVPKAEVKTEVLQNAD-ADQAQAKNLLRRFNESAMKAKHKVERKVSASQIAFGYGGESTSTKSYGGIPRGGSSVNVSQNSAFGGMREKEYKEPWDYYSNYPVTLPLRRPYSGNPELLDEVEFGVTSVSRTYNENASNPATELGLLEENLEASMFFVNLPPTLPIITQSATARGQNVDVNSKPPGGSKDVEKPCKLNELPSGFMGKMLVYKSGAIKLKLGHTLYDVSPGMTCTFAQDVVAINTAQKHCCAIGEISKHVVITPDIDAILDNLSDL 294
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NAF7|A0A2K3NAF7_TRIPR (DNA-directed RNA polymerase iii subunit rpc4-like protein OS=Trifolium pratense OX=57577 GN=L195_g023262 PE=4 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 6.813e-104 Identity = 156/210 (74.29%), Postives = 173/210 (82.38%), Query Frame = 0 Query: 92 SKTNGTESSAF----------VDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
SKT+G E+SAF AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR YDE+ ANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG + KL +L+E+P G IGKMIVYKSGKVKLK G+TLYDVSSGMNCIFSQELVAMNA EK C +IGEI+ LATVTPDIDAALDCL+DLDL
Sbjct: 8 SKTSGGENSAFDGLDIHDTLTTGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYDESTANSAIELGLLEENPEASAFFMKLPPVIPMIKKVQ-DVKENVKRPGGPRGXAKLVRLNELPAGFIGKMIVYKSGKVKLKHGDTLYDVSSGMNCIFSQELVAMNAXEKHCCTIGEINXLATVTPDIDAALDCLSDLDL 216
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.2 (| RNA polymerase III RPC4 | Chr5:2911313-2913136 REVERSE LENGTH=272 | 201606) HSP 1 Score: 214.927 bits (546), Expect = 9.373e-69 Identity = 127/288 (44.10%), Postives = 185/288 (64.24%), Query Frame = 0 Query: 5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARM-KVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDL 289
+ KPP R K+K+APKAPPKRVPK EVK E +E++ +++A+A ELLRR NER R K +KKV ASQ+A+ GG + + +++NG S EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A + E++ N+AA LGL+E++ E + FM+LP V P+ P +++ N K P E K L +P G +GK++VYKSG VK+K+G LYDVS G+ F+Q+++ +N +K C +G++ K A +TPDID+ L + ++
Sbjct: 1 MEQKPPVR-KMKFAPKAPPKRVPKPEVKPEVVEDN--SNSAQASELLRRV--NERSLRKPKADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGPV----EKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSILKDIENI 272
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.3 (| RNA polymerase III RPC4 | Chr5:2911641-2913136 REVERSE LENGTH=231 | 201606) HSP 1 Score: 177.563 bits (449), Expect = 1.168e-54 Identity = 112/246 (45.53%), Postives = 156/246 (63.41%), Query Frame = 0 Query: 5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARM-KVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNC 247
+ KPP R K+K+APKAPPKRVPK EVK E +E++ +++A+A ELLRR NER R K +KKV ASQ+A+ GG + + +++NG S EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A + E++ N+AA LGL+E++ E + FM+LP V P+ P +++ N K P E K L +P G +GK++VYKSG VK+K+G LYDVS +
Sbjct: 1 MEQKPPVR-KMKFAPKAPPKRVPKPEVKPEVVEDN--SNSAQASELLRRV--NERSLRKPKADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGP----VEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSDSFSV 230
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.1 (| RNA polymerase III RPC4 | Chr5:2911313-2912585 REVERSE LENGTH=216 | 201606) HSP 1 Score: 161.77 bits (408), Expect = 1.192e-48 Identity = 91/217 (41.94%), Postives = 135/217 (62.21%), Query Frame = 0 Query: 69 VSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAAL 283
V ASQ+A+ GG + + +++NG S EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A + E++ N+AA LGL+E++ E + FM+LP V P+ P +++ N K P E K L +P G +GK++VYKSG VK+K+G LYDVS G+ F+Q+++ +N +K C +G++ K A +TPDID+ L
Sbjct: 5 VPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGP----VEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSIL 210
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT4G25180.1 (| RNA polymerase III RPC4 | Chr4:12911746-12913907 REVERSE LENGTH=311 | 201606) HSP 1 Score: 155.992 bits (393), Expect = 2.722e-45 Identity = 103/311 (33.12%), Postives = 153/311 (49.20%), Query Frame = 0 Query: 11 ARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---------------------------GGSKTNGTESSAFVDANGKEYKEPWDLY-SDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFM-KLPPVFPMIKKPEADVKVNSKR--PGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLD 290
++R+ + P P +R+P + EED + A R+F R K E K S+ ++AF + +G ++ +G E FV G +Y EPWD S YP LPLRKP SG+ E LD+EEFGE +++R YDEN NSA ELGL + +F+ K+P P++K+ S R G N + +P G +GKM+VYKSG VKLK+G+ L+DVS G ++VA++ + CS IG +K TVTPD+++ L+ +D++
Sbjct: 8 SKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKAS-----RQFDRRIVGRRPKTETKASSPEVAFQPSLSPLAIRSFGVPKEDDKPNSDVNPSSPASILPAVSSVTAAQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGISN-----PFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDME 308 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1; organism=Vicia faba; type=mRNA; length=876bpback to top protein sequence of Vfaba.Hedin2.R1.3g080080.1_vfh_v1 >Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=291bpback to top mRNA from alignment at chr3:496022911..496027004+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:496022911..496027004+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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