Vfaba.Hedin2.R1.3g080080.1

Transcript Overview
NameVfaba.Hedin2.R1.3g080080.1
Unique NameVfaba.Hedin2.R1.3g080080.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length876
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:496022911..496027004 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR275Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR302Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL304Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL207Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL286Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0162Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL260Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL381Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL572Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL555Pisum sativum Cameor genome v1aPisum sativum
psvfhL583Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL220Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR365Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR390Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL244Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL349Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL418Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0678Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0823Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR425Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR325Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR327Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR370Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR402Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL176Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL159Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL386Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL174Cicer arietinum
carvfhL242Cicer arietinum
ccavfhL235Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL340Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR392Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR450Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR362Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR383Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR462Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL528Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL697Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR449Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR462Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL543Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL618Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR338Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_08501.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_09485.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat06G0388400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_004495521.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_10158.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat6g143520.1Pisum sativum Cameor genome v1aPisum sativum
XM_058914605.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_03784Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058914598.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg3060.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g067200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g080080Vfaba.Hedin2.R1.3g080080_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496022911..496022952Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496023033..496023088Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496023528..496023594Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496023693..496023732Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496024347..496024451Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496024555..496024586Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496024732..496024792Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496025083..496025174Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496025261..496025485Vicia fabaexon
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-exonVfaba.Hedin2.R1.3g080080.1_vfh_v1-exon-chr3_vfh_v1:496026849..496027004Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496022911..496022952Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496023033..496023088Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496023528..496023594Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496023693..496023732Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496024347..496024451Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496024555..496024586Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496024732..496024792Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496025083..496025174Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496025261..496025485Vicia fabaCDS
Vfaba.Hedin2.R1.3g080080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g080080.1_vfh_v1-cds-chr3_vfh_v1:496026849..496027004Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g080080.1_vfh_v1Vfaba.Hedin2.R1.3g080080.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g080080.1_vfh_v1Vfaba.Hedin2.R1.3g080080.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PD66|A0A2K3PD66_TRIPR (DNA-directed RNA polymerase iii subunit rpc4-like protein OS=Trifolium pratense OX=57577 GN=L195_g009871 PE=4 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 2.794e-140
Identity = 209/292 (71.58%), Postives = 238/292 (81.51%), Query Frame = 0
Query:    5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIA--FGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
             DSKP   RKVK+ PK PP+RVPKIEVKSE +EED K ++A+A E+LR   EN  KARMKVEKKV AS++   FGSG QS+  K Y      SKTNG E+SAF  AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESRAYDE+ ANSA ELGLLEENPEA + FMKLPPV PM+KK + DVK N KRPGG +   KL +L+E+P G IGKM+VYKSGKVKLK+G+TLYDVSSGMNC FSQELVAMNAAEK C +IGEI+ LATVTPDIDAALDCL+DLDL
Sbjct:    1 MDSKPSKGRKVKFQPKIPPRRVPKIEVKSEVVEEDIKDTSAKASEILRNLEEN--KARMKVEKKVLASRVGGGFGSGAQSTSFKSYAFHKSESKTNGGENSAFDGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRAYDESKANSAIELGLLEENPEASAFFMKLPPVIPMLKKVQ-DVKENVKRPGGPRGAAKLVRLNELPAGFIGKMLVYKSGKVKLKLGDTLYDVSSGMNCTFSQELVAMNAAEKHCCAIGEINALATVTPDIDAALDCLSDLDL 289          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XYB1|A0A1S2XYB1_CICAR (DNA-directed RNA polymerase III subunit RPC4-like OS=Cicer arietinum OX=3827 GN=LOC101513907 PE=4 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 1.758e-139
Identity = 206/298 (69.13%), Postives = 239/298 (80.20%), Query Frame = 0
Query:    1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKP----EADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            MD NFDSKPPA RKVK+APKA P++VPKIEVKSE  EEDN  +AA+AKELLRRF+EN  KARMKVEKKVSASQIAFG GG+S   K Y      SKT+  E+ AF     KEY+EPWD+ S+YPI+LPLRKPYSG+PEYL++EEFGEA+ +R YDE+ +NSA ELGLLEENPEA + F+KLPPV PMIK P      DVK NSKRP   K   KLYKL+E+PPGL+GKM+VYKSG VKLK+GNTLYDVSSGM+C F+Q+  AMN AEK CS IGEI+K AT+TPD+DAALDCL DLDL
Sbjct:    1 MDPNFDSKPPAPRKVKFAPKALPRKVPKIEVKSEVAEEDNATAAADAKELLRRFNENAMKARMKVEKKVSASQIAFGFGGESVSRKSYNIPKSESKTSFGENLAFNGVKEKEYQEPWDMNSNYPIALPLRKPYSGDPEYLNEEEFGEAAITRTYDESKSNSAMELGLLEENPEASAFFIKLPPVVPMIKNPAKAGSQDVKENSKRPRVSKGVGKLYKLNELPPGLMGKMLVYKSGAVKLKLGNTLYDVSSGMDCSFAQDYAAMNTAEKHCSIIGEITKHATITPDVDAALDCLKDLDL 298          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|G7I6T0|G7I6T0_MEDTR (Putative DNA-directed RNA polymerase III subunit RPC4 OS=Medicago truncatula OX=3880 GN=11405592 PE=4 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 1.771e-136
Identity = 200/293 (68.26%), Postives = 237/293 (80.89%), Query Frame = 0
Query:    1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG--GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            MD N DSKPP RRK+K+ PKAPP+RVPK+EVKSE IEEDNK  +    +LL+R +EN    RMK EKKV  SQIAFG+GGQS+Y K YG  GGSK+   E+SAF     KEYKEPW+L ++YPI  PLRKPYSGNPE LD++EFGE +ESR YDE+AA+SA EL LLEENPEA + FMKLPPV PMIKKP+AD K   KRPGG +   KL +L+++PPGLIGKM+VYKSGKVKLK+GNTLYDVSSGMNCIF+QE  A+N A+K CS++GEI+K ATVTPDIDAALDCL+DL+L
Sbjct:    1 MDLNNDSKPPQRRKLKFQPKAPPRRVPKVEVKSEVIEEDNKDVSKVTMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKS---ENSAFYGVTEKEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVELDLLEENPEASAFFMKLPPVIPMIKKPDADGK--DKRPGGYRGAAKLCRLNDLPPGLIGKMLVYKSGKVKLKLGNTLYDVSSGMNCIFAQEFAAINTAQKFCSALGEINKFATVTPDIDAALDCLSDLNL 288          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|I3SXE3|I3SXE3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 4.188e-135
Identity = 199/293 (67.92%), Postives = 236/293 (80.55%), Query Frame = 0
Query:    1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG--GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            MD N DSKPP RRK+K+ PKAPP+RVPK+EVKSE IEEDNK  +    +LL+R +EN    RMK EKKV  SQIAFG+GGQS+Y K YG  GGSK+   E+SAF     KEYKEPW+L ++YPI  PLRKPYSGNPE LD++EFGE +ESR YDE+AA+SA EL LLEENPEA + FMKLPPV PMIKKP+AD K   KRPGG +   KL +L+++PPGLIGKM+VYKSGKVKLK+GNTLYDVSSGMNCIF+QE  A+N A+K CS++GEI+K ATVT DIDAALDCL+DL+L
Sbjct:    1 MDLNNDSKPPQRRKLKFQPKAPPRRVPKVEVKSEVIEEDNKDVSKVTMDLLQRHNENAMNRRMKHEKKVLPSQIAFGAGGQSTYLKSYGTKGGSKS---ENSAFYGVTEKEYKEPWELDTEYPIVHPLRKPYSGNPEKLDEKEFGETAESRTYDESAASSAVELDLLEENPEASAFFMKLPPVIPMIKKPDADGK--DKRPGGYRGAAKLCRLNDLPPGLIGKMLVYKSGKVKLKLGNTLYDVSSGMNCIFAQEFAAINTAQKFCSALGEINKFATVTLDIDAALDCLSDLNL 288          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LX09|A0A2Z6LX09_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_33700 PE=4 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 8.527e-128
Identity = 186/261 (71.26%), Postives = 214/261 (81.99%), Query Frame = 0
Query:   34 EAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            E +EED KA++A+A ELLR   EN+ KA+M  EKKVS S +AFGSG QS+  K YG     SKT+G E+SA   AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR Y+E+AANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG +    L +L+E+P G IGKM+VYKSGKVKLK+G+TLYDVSSGMNCIFSQELVAMN AEK C ++ EISKLATVTPDIDAALDCL+DLDL
Sbjct:    9 EVVEEDIKATSAKANELLRNLEENKVKAKMNFEKKVSTSHVAFGSGAQSTSFKSYGFPKSESKTSGGENSALDGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYNESAANSAVELGLLEENPEASAFFMKLPPVIPMIKKVQ-DVKENVKRPGGPRGAAMLVRLNELPAGFIGKMLVYKSGKVKLKLGDTLYDVSSGMNCIFSQELVAMNTAEKNCCTVAEISKLATVTPDIDAALDCLSDLDL 268          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NJ19|A0A2Z6NJ19_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_88740 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.072e-119
Identity = 187/294 (63.61%), Postives = 210/294 (71.43%), Query Frame = 0
Query:    1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            MD NFDSKPP  R+                                           E KAR KVEK+VSAS +AFGSG QS+  K YG    GSKT+G E+SA   AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR YDE+ ANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG +   KL +L+E+  G IGKM+VYKSGKVKLK+G+TLYDVSSG+NCI SQELVAMNAAEK C +IGEISKLATVTPDIDAALDCL+DLDL
Sbjct:    1 MDLNFDSKPPKGRQ-------------------------------------------ENKARTKVEKRVSASSVAFGSGAQSTSFKSYGFHKSGSKTSGGENSASDSANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYDESIANSAIELGLLEENPEANAFFMKLPPVIPMIKKVQ-DVKENIKRPGGPRGAAKLVRLNELSAGFIGKMLVYKSGKVKLKLGDTLYDVSSGINCILSQELVAMNAAEKHCCTIGEISKLATVTPDIDAALDCLSDLDL 250          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5NUY3|A0A6A5NUY3_LUPAL (Putative DNA-directed RNA polymerase III subunit RPC4 OS=Lupinus albus OX=3870 GN=Lal_00040734 PE=4 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 7.595e-107
Identity = 164/289 (56.75%), Postives = 209/289 (72.32%), Query Frame = 0
Query:    5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---GGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA--DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLND 288
             DS+   +RK+K+APKAP  R PK EVK+E ++ D+   + +A++LLRRF+EN  K R KVEKKVSASQIAFG GG+++  K YG   GGS  NG++SS       KEYKEPWD YS+YP +LP+R+PY+GNPE LD+EEFGEA+ESR YDEN++N+A EL LLEEN E     ++LP   P IK      D   NS+   G KN  K  KL E+P G++GKM+VYKSGK+K+K+G+TLYDVS GMNC F+Q+ VA+N A+K C +IGEISK  T+TPDIDA L  LND
Sbjct:    1 MDSQNAPQRKLKFAPKAPALRKPKPEVKTEVVDNDD---SVQARDLLRRFNENLMKGRPKVEKKVSASQIAFGDGGEATSVKSYGFAKGGSNINGSQSSTSNAGREKEYKEPWDYYSNYPTTLPVRRPYAGNPETLDEEEFGEAAESRTYDENSSNAAVELDLLEENSENSMFLIQLPATLPTIKGSSGGQDANKNSQPSKGSKNAEKPCKLKELPSGIMGKMLVYKSGKIKMKLGDTLYDVSPGMNCGFAQDAVAVNTAQKHCCTIGEISKHVTITPDIDAVLGQLND 286          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444WNE0|A0A444WNE0_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_Scaffold9g108594 PE=4 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 6.405e-106
Identity = 166/284 (58.45%), Postives = 208/284 (73.24%), Query Frame = 0
Query:    1 MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA----DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDID 280
            MDSN  +  P R KVK+APKAPP+R PK EVK+E  E+ +   A +AK+LLRRF+E+    R KVEKKVSASQIAFG GG+++  KPY   S  +G+++SAF     KEYKEPWD YS+YP++LPLR+PYSGNPE LD+EEFGEA+ESR +DEN+ N A ELGLLEENPE     ++LP   P IK   +    D   +S +P G   +VK  KL+E+PPGL+GKM+VYKSG +KLK+G+TLYDVS G NC F+Q++  MN AEK C +IGEISK  TVTPDID
Sbjct:    1 MDSNRSNNAPGR-KVKFAPKAPPRRAPKKEVKAELAEDHD---AEQAKDLLRRFNESAMNGRHKVEKKVSASQIAFGYGGEATSFKPYRNPS--SGSDNSAFSGVREKEYKEPWDYYSNYPVTLPLRRPYSGNPELLDEEEFGEAAESRTFDENSTNPAKELGLLEENPETSVFLIQLPAALPAIKGSASSGGQDGSESSCKPQGSMKKVKPCKLNELPPGLMGKMLVYKSGAIKLKLGDTLYDVSPGSNCTFAQDVAVMNTAEKHCCAIGEISKRVTVTPDID 278          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371I0F9|A0A371I0F9_MUCPR (DNA-directed RNA polymerase III subunit RPC4 (Fragment) OS=Mucuna pruriens OX=157652 GN=Polr3d PE=4 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.281e-104
Identity = 173/295 (58.64%), Postives = 217/295 (73.56%), Query Frame = 0
Query:    5 FDSK--PPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYGG----GSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEA----DVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDL 289
             DSK  P   RKVK+AP+APP+RVPK EVK+E ++  + A  A+AK LLRRF+E+  KA+ KVE+KVSASQIAFG GG+S+  K YGG    GS  N +++SAF     KEYKEPWD YS+YP++LPLR+PYSGNPE LD+ EFG  S SR Y+ENA+N A ELGLLEEN EA   F+ LPP  P+I +       +V VNSK PGG K+  K  KL+E+P G +GKM+VYKSG +KLK+G+TLYDVS GM C F+Q++VA+N A+K C +IGEISK   +TPDIDA LD L+DL
Sbjct:    1 MDSKDAPGIPRKVKFAPRAPPRRVPKAEVKTEVLQNAD-ADQAQAKNLLRRFNESAMKAKHKVERKVSASQIAFGYGGESTSTKSYGGIPRGGSSVNVSQNSAFGGMREKEYKEPWDYYSNYPVTLPLRRPYSGNPELLDEVEFGVTSVSRTYNENASNPATELGLLEENLEASMFFVNLPPTLPIITQSATARGQNVDVNSKPPGGSKDVEKPCKLNELPSGFMGKMLVYKSGAIKLKLGHTLYDVSPGMTCTFAQDVVAINTAQKHCCAIGEISKHVVITPDIDAILDNLSDL 294          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NAF7|A0A2K3NAF7_TRIPR (DNA-directed RNA polymerase iii subunit rpc4-like protein OS=Trifolium pratense OX=57577 GN=L195_g023262 PE=4 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 6.813e-104
Identity = 156/210 (74.29%), Postives = 173/210 (82.38%), Query Frame = 0
Query:   92 SKTNGTESSAF----------VDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL 291
            SKT+G E+SAF            AN KEYKEPWDLYSDYP+ LPLRKPYSGNPEYL++EEFGEA+ESR YDE+ ANSA ELGLLEENPEA + FMKLPPV PMIKK + DVK N KRPGG +   KL +L+E+P G IGKMIVYKSGKVKLK G+TLYDVSSGMNCIFSQELVAMNA EK C +IGEI+ LATVTPDIDAALDCL+DLDL
Sbjct:    8 SKTSGGENSAFDGLDIHDTLTTGANVKEYKEPWDLYSDYPLVLPLRKPYSGNPEYLNEEEFGEAAESRTYDESTANSAIELGLLEENPEASAFFMKLPPVIPMIKKVQ-DVKENVKRPGGPRGXAKLVRLNELPAGFIGKMIVYKSGKVKLKHGDTLYDVSSGMNCIFSQELVAMNAXEKHCCTIGEINXLATVTPDIDAALDCLSDLDL 216          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.2 (| RNA polymerase III RPC4 | Chr5:2911313-2913136 REVERSE LENGTH=272 | 201606)

HSP 1 Score: 214.927 bits (546), Expect = 9.373e-69
Identity = 127/288 (44.10%), Postives = 185/288 (64.24%), Query Frame = 0
Query:    5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARM-KVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDL 289
             + KPP R K+K+APKAPPKRVPK EVK E +E++  +++A+A ELLRR   NER  R  K +KKV ASQ+A+  GG  +  +     +++NG   S        EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A     + E++ N+AA LGL+E++ E +  FM+LP V P+   P  +++   N K P     E K   L  +P G +GK++VYKSG VK+K+G  LYDVS G+   F+Q+++ +N  +K C  +G++ K A +TPDID+ L  + ++
Sbjct:    1 MEQKPPVR-KMKFAPKAPPKRVPKPEVKPEVVEDN--SNSAQASELLRRV--NERSLRKPKADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGPV----EKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSILKDIENI 272          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.3 (| RNA polymerase III RPC4 | Chr5:2911641-2913136 REVERSE LENGTH=231 | 201606)

HSP 1 Score: 177.563 bits (449), Expect = 1.168e-54
Identity = 112/246 (45.53%), Postives = 156/246 (63.41%), Query Frame = 0
Query:    5 FDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARM-KVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNC 247
             + KPP R K+K+APKAPPKRVPK EVK E +E++  +++A+A ELLRR   NER  R  K +KKV ASQ+A+  GG  +  +     +++NG   S        EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A     + E++ N+AA LGL+E++ E +  FM+LP V P+   P  +++   N K P     E K   L  +P G +GK++VYKSG VK+K+G  LYDVS   + 
Sbjct:    1 MEQKPPVR-KMKFAPKAPPKRVPKPEVKPEVVEDN--SNSAQASELLRRV--NERSLRKPKADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGP----VEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSDSFSV 230          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT5G09380.1 (| RNA polymerase III RPC4 | Chr5:2911313-2912585 REVERSE LENGTH=216 | 201606)

HSP 1 Score: 161.77 bits (408), Expect = 1.192e-48
Identity = 91/217 (41.94%), Postives = 135/217 (62.21%), Query Frame = 0
Query:   69 VSASQIAFGSGGQSSYHKPYGGGSKTNGTESSAFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKV--NSKRPGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAAL 283
            V ASQ+A+  GG  +  +     +++NG   S        EYKEPWD YS YPI+LP+R+PY+G+PE LD EEF +A     + E++ N+AA LGL+E++ E +  FM+LP V P+   P  +++   N K P     E K   L  +P G +GK++VYKSG VK+K+G  LYDVS G+   F+Q+++ +N  +K C  +G++ K A +TPDID+ L
Sbjct:    5 VPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGP----VEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSIL 210          
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Match: AT4G25180.1 (| RNA polymerase III RPC4 | Chr4:12911746-12913907 REVERSE LENGTH=311 | 201606)

HSP 1 Score: 155.992 bits (393), Expect = 2.722e-45
Identity = 103/311 (33.12%), Postives = 153/311 (49.20%), Query Frame = 0
Query:   11 ARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKELLRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYG---------------------------GGSKTNGTESSAFVDANGKEYKEPWDLY-SDYPISLPLRKPYSGNPEYLDKEEFGEASESRAYDENAANSAAELGLLEENPEARSIFM-KLPPVFPMIKKPEADVKVNSKR--PGGRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFSQELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLD 290
            ++R+ +  P  P +R+P     +   EED +   A      R+F       R K E K S+ ++AF         + +G                             ++ +G E   FV   G +Y EPWD   S YP  LPLRKP SG+ E LD+EEFGE +++R YDEN  NSA ELGL       + +F+ K+P   P++K+        S R    G  N       + +P G +GKM+VYKSG VKLK+G+ L+DVS G       ++VA++   + CS IG  +K  TVTPD+++ L+  +D++
Sbjct:    8 SKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKAS-----RQFDRRIVGRRPKTETKASSPEVAFQPSLSPLAIRSFGVPKEDDKPNSDVNPSSPASILPAVSSVTAAQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGISN-----PFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDME 308          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3PD66|A0A2K3PD66_TRIPR2.794e-14071.58DNA-directed RNA polymerase iii subunit rpc4-like ... [more]
tr|A0A1S2XYB1|A0A1S2XYB1_CICAR1.758e-13969.13DNA-directed RNA polymerase III subunit RPC4-like ... [more]
tr|G7I6T0|G7I6T0_MEDTR1.771e-13668.26Putative DNA-directed RNA polymerase III subunit R... [more]
tr|I3SXE3|I3SXE3_MEDTR4.188e-13567.92Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A2Z6LX09|A0A2Z6LX09_TRISU8.527e-12871.26Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6NJ19|A0A2Z6NJ19_TRISU1.072e-11963.61Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A6A5NUY3|A0A6A5NUY3_LUPAL7.595e-10756.75Putative DNA-directed RNA polymerase III subunit R... [more]
tr|A0A444WNE0|A0A444WNE0_ARAHY6.405e-10658.45Uncharacterized protein OS=Arachis hypogaea OX=381... [more]
tr|A0A371I0F9|A0A371I0F9_MUCPR1.281e-10458.64DNA-directed RNA polymerase III subunit RPC4 (Frag... [more]
tr|A0A2K3NAF7|A0A2K3NAF7_TRIPR6.813e-10474.29DNA-directed RNA polymerase iii subunit rpc4-like ... [more]
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BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.3g080080.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G09380.29.373e-6944.10| RNA polymerase III RPC4 | Chr5:2911313-2913136 R... [more]
AT5G09380.31.168e-5445.53| RNA polymerase III RPC4 | Chr5:2911641-2913136 R... [more]
AT5G09380.11.192e-4841.94| RNA polymerase III RPC4 | Chr5:2911313-2912585 R... [more]
AT4G25180.12.722e-4533.12| RNA polymerase III RPC4 | Chr4:12911746-12913907... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 194..279
e-value: 1.6E-20
score: 74.0
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 8..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1; organism=Vicia faba; type=mRNA; length=876bp
ATGGATTCAAATTTTGATTCAAAGCCTCCGGCACGAAGAAAGGTTAAATA
TGCACCAAAAGCTCCACCTAAAAGAGTGCCAAAGATAGAAGTTAAAAGTG
AAGCTATTGAGGAGGATAATAAAGCATCAGCGGCAGAGGCTAAGGAACTC
CTTCGGCGTTTCCATGAAAATGAGAGGAAGGCAAGGATGAAGGTTGAGAA
AAAAGTGTCAGCTTCACAAATTGCTTTTGGTTCTGGAGGCCAATCAAGTT
ATCACAAACCATATGGTGGTGGGAGCAAGACCAATGGCACCGAAAGTTCA
GCATTCGTTGATGCAAACGGGAAAGAATACAAAGAACCATGGGACCTGTA
CAGTGATTATCCAATATCTCTTCCCTTGAGGAAACCATATTCAGGCAACC
CAGAATATCTTGACAAGGAGGAGTTCGGGGAGGCTTCAGAATCCAGAGCT
TATGATGAAAATGCAGCAAATTCAGCAGCGGAGCTTGGCCTTTTGGAAGA
AAACCCAGAGGCAAGGTCAATCTTCATGAAATTACCACCAGTTTTTCCTA
TGATTAAAAAACCTGAAGCTGATGTTAAGGTGAACTCTAAACGTCCCGGA
GGTCGTAAAAATGAGGTGAAGCTCTACAAGTTGGATGAAATGCCACCCGG
TCTAATTGGCAAAATGATTGTGTACAAGAGTGGTAAAGTTAAGCTGAAGA
TTGGAAACACCCTTTATGATGTTTCATCAGGAATGAATTGTATATTTAGT
CAAGAGTTAGTTGCAATGAATGCTGCTGAAAAGCAGTGCAGCTCAATTGG
GGAGATCAGCAAGCTTGCTACTGTAACCCCCGACATTGATGCTGCACTTG
ATTGTCTTAATGATTTAGATCTATAA
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protein sequence of Vfaba.Hedin2.R1.3g080080.1_vfh_v1

>Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=291bp
MDSNFDSKPPARRKVKYAPKAPPKRVPKIEVKSEAIEEDNKASAAEAKEL
LRRFHENERKARMKVEKKVSASQIAFGSGGQSSYHKPYGGGSKTNGTESS
AFVDANGKEYKEPWDLYSDYPISLPLRKPYSGNPEYLDKEEFGEASESRA
YDENAANSAAELGLLEENPEARSIFMKLPPVFPMIKKPEADVKVNSKRPG
GRKNEVKLYKLDEMPPGLIGKMIVYKSGKVKLKIGNTLYDVSSGMNCIFS
QELVAMNAAEKQCSSIGEISKLATVTPDIDAALDCLNDLDL
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mRNA from alignment at chr3:496022911..496027004+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g080080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g080080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g080080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:496022911..496027004+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding