rna-XM_004496631.3
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:6797687-6798815 FORWARD LENGTH=196) HSP 1 Score: 71.2478 bits (173), Expect = 1.393e-15 Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 0 Query: 48 LDENAFKAKQRLRKKLGY--FLSSSGSSEQNPKKEGK-ETKSTFEKKDVGLGR---KLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
LD A +AKQRL K+L +G + N ++GK + + VGL + +L+E W R R E++ CA+CL+ F++ + +++L C+HK+HS CLLPWL N +CP CRT +
Sbjct: 79 LDGAAKEAKQRLNKRLRIPPRTRQNGKDKGNKLEQGKGKPLGDLPTEVVGLKKSRGRLME--WFKRRVR---EQQDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:18455326-18456444 REVERSE LENGTH=250) HSP 1 Score: 63.5438 bits (153), Expect = 2.043e-12 Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 Query: 111 LKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+K E + C++CLE F + +++L C+H +HS+CL PWLRA CPCCR +
Sbjct: 196 VKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:21716920-21717892 REVERSE LENGTH=238) HSP 1 Score: 58.9214 bits (141), Expect = 9.050e-11 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0 Query: 112 KKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+++ K C+VCLEDF+ + VM C H +H C++PWL+ CP CR ++
Sbjct: 138 EEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 188
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:21716920-21717892 REVERSE LENGTH=258) HSP 1 Score: 58.9214 bits (141), Expect = 9.442e-11 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0 Query: 112 KKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+++ K C+VCLEDF+ + VM C H +H C++PWL+ CP CR ++
Sbjct: 158 EEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 208
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:21716920-21717908 REVERSE LENGTH=266) HSP 1 Score: 58.9214 bits (141), Expect = 9.879e-11 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0 Query: 112 KKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+++ K C+VCLEDF+ + VM C H +H C++PWL+ CP CR ++
Sbjct: 166 EEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 216
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:21716544-21717908 REVERSE LENGTH=317) HSP 1 Score: 58.9214 bits (141), Expect = 1.310e-10 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0 Query: 112 KKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+++ K C+VCLEDF+ + VM C H +H C++PWL+ CP CR ++
Sbjct: 166 EEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 216
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: BTL08 | BCA2####zinc finger ATL 8 | chr3:6942679-6943839 FORWARD LENGTH=386) HSP 1 Score: 58.5362 bits (140), Expect = 1.825e-10 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0 Query: 109 NRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
+ LK E CAVC+++F+ +V + C H +H CLLPWL + CP CR
Sbjct: 265 DMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 315
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: BTL08 | BCA2####zinc finger ATL 8 | chr3:6942679-6943839 FORWARD LENGTH=386) HSP 1 Score: 58.5362 bits (140), Expect = 1.825e-10 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0 Query: 109 NRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
+ LK E CAVC+++F+ +V + C H +H CLLPWL + CP CR
Sbjct: 265 DMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 315
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: BTL07 | BCA2####zinc finger ATL 7 | chr3:4367754-4368701 FORWARD LENGTH=315) HSP 1 Score: 58.5362 bits (140), Expect = 2.035e-10 Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0 Query: 118 CAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
C+VCL+DF+ E + C HK+HS CLLPWL + CP CR ++
Sbjct: 225 CSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLL 269
BLAST of rna-XM_004496631.3 vs. Araport11
Match: | (Symbols: BTL07 | BCA2####zinc finger ATL 7 | chr3:4367754-4368701 FORWARD LENGTH=315) HSP 1 Score: 58.5362 bits (140), Expect = 2.035e-10 Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0 Query: 118 CAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
C+VCL+DF+ E + C HK+HS CLLPWL + CP CR ++
Sbjct: 225 CSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLL 269
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q852U6|RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.996e-11 Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 Query: 111 LKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMV 162
+K E + C++CLE F + +++L C+H +HS+CL PWLRA CPCCR +
Sbjct: 196 VKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAI 247
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.062e-9 Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0 Query: 110 RLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
L E CAVC++DF++ E + C H YH CLLPWL + CP CR
Sbjct: 216 NLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR 265
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.335e-9 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0 Query: 109 NRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
+ LK E CAVC+++F+ +V + C H +H CLLPWL + CP CR
Sbjct: 207 DMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.902e-9 Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 55 AKQRLRKKLGYFLSSSGSSEQNPKKEGKET-----KSTFEKKDVGLGRKLLES--TWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNL-SCSHKYHSACLLPWLRANPHCPCCR 159
+ L+KK SS S QNP+ +T + F D GL + L+++ +L + + KE CAVCL +F + ++ L +CSH +H C+ WL +N CP CR
Sbjct: 74 VRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C1X4|YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 9.438e-9 Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0 Query: 111 LKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
L E+ C +C+E F+ + +V+ L C H +H C+ PWLR N C CR V+P+
Sbjct: 389 LIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPN 443
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.934e-8 Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0 Query: 111 LKKEKKV-CAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
+K E+ V C+VCL+D + + + C HK+HS+C+LPWL + CP CR
Sbjct: 191 VKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCR 240
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|P0DPR2|RNF43_XENTR (E3 ubiquitin-protein ligase RNF43 OS=Xenopus tropicalis OX=8364 GN=rnf43 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.271e-8 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0 Query: 117 VCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCC 158
VCA+CLE+F +E+ L C H+YH C+ PWLR N CP C
Sbjct: 267 VCAICLEEFTDGQELRILPCCHEYHLGCVDPWLRQNHTCPLC 308
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9H0F5|RNF38_HUMAN (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens OX=9606 GN=RNF38 PE=1 SV=4) HSP 1 Score: 54.299 bits (129), Expect = 6.827e-8 Identity = 25/74 (33.78%), Postives = 42/74 (56.76%), Query Frame = 0 Query: 89 EKKDVGLGRKLLE--STWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRT 160
E K GL + +E ++ N + E+ +C VC+ DF+ + + L C+H++H+ C+ WL+AN CP CR
Sbjct: 432 EAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 505
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q5RF74|RN128_PONAB (E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii OX=9601 GN=RNF128 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.019e-7 Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 0 Query: 63 LGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNR-LKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
+GYF+ S +N + + ++ + +GR L + L +G+R + + CAVC+E ++ + V L+C+H +H C+ PWL + CP C+
Sbjct: 223 VGYFIFYSARRLRNARAQSRKQRQLKADAKKAIGRLQLRT--LKQGDREIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCK 318
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9Y4L5|RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 1.332e-7 Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0 Query: 118 CAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCR 159
C VC ED+ +EV L C+H +HS+C++PWL + CP CR
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 269
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XZ05|A0A1S2XZ05_CICAR (RING-H2 finger protein ATL47-like OS=Cicer arietinum OX=3827 GN=LOC101506187 PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 8.510e-119 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
MAGRLPGVGLPPRKKSQLNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS
Sbjct: 1 MAGRLPGVGLPPRKKSQLNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VPT0|A0A072VPT0_MEDTR (Zinc finger, C3HC4 type (RING finger) protein OS=Medicago truncatula OX=3880 GN=25485152 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 2.784e-88 Identity = 129/165 (78.18%), Postives = 143/165 (86.67%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQ-LNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEP 164
MAGRLPGVGL PRK+S+ + RHEH TYRDS L ESLDAPWTS+TTTLDE AFKAKQRL+KKLG+F SSS SSE NPKKEGKE F+KKD GLGRKLLES+WLLRGN+ KKE+K+CAVCLEDFQQ +EVMNLSCSHKYHSACLLPWL +PHCP CRT+VEP
Sbjct: 1 MAGRLPGVGLSPRKRSEHYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSRSSEHNPKKEGKE----FQKKDAGLGRKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLETHPHCPYCRTIVEP 161
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|B7FF93|B7FF93_MEDTR (RING-type domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 1.507e-86 Identity = 127/165 (76.97%), Postives = 142/165 (86.06%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQ-LNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEP 164
MAGRLPGVGL PRK+S+ + RHEH TYRDS L ESLDAPWTS+TTTLDE AFKAKQRL+KKLG+F SSS SSE NPKKEGKE F+KKD GLGRKLLES+WLLRGN+ KKE+K+CAVCLEDF Q +EVMNLSCSHKYHSACLLPWL +PHCP CRT+V+P
Sbjct: 1 MAGRLPGVGLSPRKRSEHYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSRSSEHNPKKEGKE----FQKKDAGLGRKLLESSWLLRGNKFKKERKICAVCLEDFLQDEEVMNLSCSHKYHSACLLPWLETHPHCPYCRTIVDP 161
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4WFR9|A0A9D4WFR9_PEA (RING-type domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_065562 PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 1.793e-81 Identity = 124/165 (75.15%), Postives = 139/165 (84.24%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKS-QLNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEP 164
MAGRLPGVGL PRKKS Q + RHE+ + S LDAPWTS+T TLDENAFKAKQRL KKLGYF SSS S+E+NPKK G+E+KS F+KKDVGLGRKLLES WLLRGNR KKE+ VCAVCLEDF Q++E+MNLSCSHKYHSACLLPWL +PHCPCCRTMV+P
Sbjct: 1 MAGRLPGVGLSPRKKSEQHHNRHENYAIRK----SLDLDAPWTSMTNTLDENAFKAKQRLEKKLGYFFSSSRSNEENPKK-GEESKSRFQKKDVGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEIMNLSCSHKYHSACLLPWLERHPHCPCCRTMVQP 160
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|C6T4N4|C6T4N4_SOYBN (RING-type domain-containing protein OS=Glycine max OX=3847 GN=100527548 PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 2.796e-67 Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIR--HEHCVTYRDS-NLSES-LDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEP 164
MAGRLPGVGL RK+++ N R H+H T R S +L ES L+ PW +T LDE A KA+QRL KKLG+F SS SSE NP+KEGK +S++EKKD G+GRKLLES+WLLRGN+ KK++KVCAVCLED Q ++VMNLSCSHKYHSACLLPWL A+PHCP CRT V+P
Sbjct: 1 MAGRLPGVGLLARKRTEQNHRYEHQHHATCRQSYHLGESSLEPPWIPLTV-LDETALKARQRLHKKLGHFFSSYRSSE-NPRKEGKVNQSSYEKKDGGIGRKLLESSWLLRGNKFKKDRKVCAVCLEDLGQEQQVMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQP 166
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445F5E2|A0A445F5E2_GLYSO (RING-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_054164 PE=4 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 9.955e-67 Identity = 110/168 (65.48%), Postives = 133/168 (79.17%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIR--HEHCVTYRDS-NLSES-LDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEP 164
MAGRLPGVGL RK+++ N R H+H T R S +L ES L+ PW +T LDE A KA+QRL KKLG+F SS SSE NP+KEGK +S++EKKD G+GRKLLES+WLLRGN+ KK++KVCAVCLED Q +++MNLSCSHKYHSACLLPWL A+PHCP CRT V+P
Sbjct: 1 MAGRLPGVGLLARKRTEQNHRYEHQHHATCRQSYHLGESSLEPPWIPLTV-LDETALKARQRLHKKLGHFFSSYRSSE-NPRKEGKVNQSSYEKKDGGIGRKLLESSWLLRGNKFKKDRKVCAVCLEDLGQEQQLMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQP 166
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A396K112|A0A396K112_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0204861 PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 1.203e-63 Identity = 101/132 (76.52%), Postives = 113/132 (85.61%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQ-LNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEV 131
MAGRLPGVGL PRK+S+ + RHEH TYRDS L ESLDAPWTS+TTTLDE AFKAKQRL+KKLG+F SSS SSE NPKKEGKE F+KKD GLGRKLLES+WLLRGN+ KKE+K+CAVCLEDFQQ +EV
Sbjct: 1 MAGRLPGVGLSPRKRSEHYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSRSSEHNPKKEGKE----FQKKDAGLGRKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEV 128
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|I1LE19|I1LE19_SOYBN (RING-type domain-containing protein OS=Glycine max OX=3847 GN=100817134 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.475e-62 Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIRHEH-----CVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
MAGRLPGVGL RK+++ N R+EH C S S D PW +T LDE A KA+QRL KKL +F SS SSE NP+KEGK +++ +EKKD G+GRKLLE +WLLRGN+LKK++KVCAVCLED ++VMNLSCSHKYHSACLL WL ++PHCP CRT V+PS
Sbjct: 1 MAGRLPGVGLLARKRTEKNYRYEHQYLPTCRHSYYPRESSSFDPPWIPLTV-LDETALKARQRLHKKLEHFFSSYRSSE-NPRKEGKVSQNRYEKKDGGIGRKLLECSWLLRGNKLKKDRKVCAVCLEDLGLEQQVMNLSCSHKYHSACLLRWLASHPHCPYCRTPVQPS 168
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445IS82|A0A445IS82_GLYSO (RING-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_028018 PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.791e-62 Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIRHEH-----CVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
MAGRLPGVGL RK+++ N R+EH C S S D PW +T LDE A KA+QRL KKL +F SS SSE NP+KEGK +++ +EKKD G+GRKLLE +WLLRGN+LKK++KVCAVCLED ++VMNLSCSHKYHSACLL WL ++PHCP CRT V+PS
Sbjct: 1 MAGRLPGVGLLARKRTEKNYRYEHQYLPTCRHSYYPRESSSFDPPWIPLTV-LDETALKARQRLHKKLEHFFSSYRSSE-NPRKEGKVSQNRYEKKDGGIGRKLLECSWLLRGNKLKKDRKVCAVCLEDLGLEQQVMNLSCSHKYHSACLLRWLASHPHCPYCRTPVQPS 168
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8ME71|A0A8B8ME71_ABRPR (E3 ubiquitin-protein ligase RNF38-like OS=Abrus precatorius OX=3816 GN=LOC113873090 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 4.243e-62 Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 0 Query: 1 MAGRLPGVGLPPRKKSQLNIRHEHCVTYRDSNLSE--SLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEK-KDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
MAGRLPGVGL PRK+++ R+EH TYR S+ + SL+ PW SI+ LD+ A KA+QRL+KKLG+F SSS SSE++ KKEGKE++S ++ KDVGLGRKLLES+WLLR N+ KKE+KVCAVCLED QQ ++VMNLSCSHKYHSACLLPWL +PHCP CRT VEPS
Sbjct: 1 MAGRLPGVGLLPRKRTEQPHRYEHHATYRHSHPRDESSLEPPWLSISV-LDDTALKARQRLQKKLGHFFSSSRSSEKS-KKEGKESQSNKQRQKDVGLGRKLLESSWLLRPNKFKKERKVCAVCLEDCQQQQQVMNLSCSHKYHSACLLPWLATHPHCPYCRTPVEPS 166 The following BLAST results are available for this feature:
BLAST of rna-XM_004496631.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11) Total hits: 10 Position : 0 Zoom : x 1
BLAST of rna-XM_004496631.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of rna-XM_004496631.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_004496631.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496631.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496631.3; organism=Cicer arietinum; type=mRNA; length=498bpback to top protein sequence of rna-XM_004496631.3_CaCDCfrontier-NCBI_v1 >rna-XM_004496631.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496631.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496631.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=165bpback to top mRNA from alignment at chr4:13396560..13398533- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_004496631.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496631.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496631.3; organism=Cicer arietinum; type=mRNA; length=1974bp; location=Sequence derived from: chr4:13396560..13398533- (Cicer arietinumback to top Coding sequence (CDS) from alignment at chr4:13396560..13398533- >rna-XM_004496631.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004496631.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004496631.3; organism=Cicer arietinum; type=CDS; length=498bp; location=Sequence derived from: chr4:13396560..13398533- (Cicer arietinumback to top |