rna-XM_004497538.3

Transcript Overview


Name	rna-XM_004497538.3
Unique Name	rna-XM_004497538.3_CaCDCfrontier-NCBI_v1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	384
Product	auxin-induced protein 6B-like

References

External references for this mRNA


Database	Accession
GeneID	101510919
GenBank	XM_004497538.3

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:21947098..21948116 +	Cicer arietinum CDC Frontier NCBI RefSeq v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-04
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11	2024-01-25
InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cacanL085	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cacanL131	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascanL346	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0639	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0648	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0838	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
cancanL087	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
caicanL0322	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancanL1033	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL1094	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
canccR0449	Cajanus cajan Asha genome v1.0	Cajanus cajan
canccR0516	Cajanus cajan Asha genome v1.0	Cajanus cajan
cancrR324	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cancrR434	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
canvrvR257	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canpvR265	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cantifR238	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvfhR247	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
cantifR282	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvrvR341	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canpvR358	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvfhR296	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canvssR325	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvssR360	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvuaR199	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR213	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canzwsR214	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvuaR251	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR270	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canzwsR242	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canzwsR253	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canpsR267	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR295	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR369	Pisum sativum Cameor genome v1a	Pisum sativum
avjcanL314	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL407	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
cancarR195		Cicer arietinum
cancarR212		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Vigun07g065800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Cr_12137.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
rna-KK1_006434	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.007G224200.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vfaba.Hedin2.R1.3g045640.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Psat6g076280.1	Pisum sativum Cameor genome v1a	Pisum sativum
LR48_mrnaVigan02g077400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-XM_014656075.1	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vfaba.Tiffany.R1.3g036920.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Ca_20144	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC101510919	gene-LOC101510919_CaCDCfrontier-NCBI_v1	Cicer arietinum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_004497538.3-1	exon-XM_004497538.3-1_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_004497595.1	cds-XP_004497595.1_CaCDCfrontier-NCBI_v1	Cicer arietinum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_004497538.3_CaCDCfrontier-NCBI_v1	rna-XM_004497538.3_CaCDCfrontier-NCBI_v1	Cicer arietinum	polypeptide
rna-XM_004497538.3_CaCDCfrontier-NCBI_v1	rna-XM_004497538.3_CaCDCfrontier-NCBI_v1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR49 | SMALL AUXIN UPREGULATED RNA 49 | chr4:16577566-16578018 FORWARD LENGTH=150)

HSP 1 Score: 100.523 bits (249), Expect = 6.835e-28
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLP-SDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            M   W+K A  G+    P SDVP GH+AV+VGE  RR+V+RA +LNHP+ ++LL EA E YGF   GPLAIPCDE LFEDI+  +
Sbjct:   16 MLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIV 100

[Close]

Query:    1 MTWMWRKNACSGNGKKLP-SDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            M   W+K A  G+    P SDVP GH+AV+VGE  RR+V+RA +LNHP+ ++LL EA E YGF   GPLAIPCDE LFEDI+  +
Sbjct:   16 MLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIV 100

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR53 | SMALL AUXIN UPREGULATED RNA 53 | chr1:6872794-6873255 REVERSE LENGTH=153)

HSP 1 Score: 95.1301 bits (235), Expect = 9.645e-26
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0

Query:    1 MTWMWRKNA-CSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            M   WR  A  S   + +PSDVP GH+AV VG   RRFV+RA YLNHP++  LL +A E +GF   GPL IPC+E +FE+ + F+
Sbjct:   20 MLRRWRNKARLSSVSRCVPSDVPSGHVAVCVGSGCRRFVVRASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFI 104

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR52 | SMALL AUXIN UPREGULATED RNA 52 | chr1:28383250-28383714 REVERSE LENGTH=154)

HSP 1 Score: 93.9745 bits (232), Expect = 2.800e-25
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 0

Query:    1 MTWMWRKNA--CSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            M   WR  A   S   + +PSDVP GH+AV VG + RRFV+RA YLNHPVL+ LL +A E +GF   GPL IPC+E +FE+ + F+
Sbjct:   20 MLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFI 105

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR69 | SMALL AUXIN UPREGULATED RNA 69 | chr5:3476884-3477330 FORWARD LENGTH=148)

HSP 1 Score: 92.0485 bits (227), Expect = 1.417e-24
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0

Query:    1 MTWMWRKNA-CSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            M   WR  A  S   + +PSDVP GH+AV VG + RRFV+ A YLNHP+L  LL +A E +GF   GPL IPC+E +FE+ + F+
Sbjct:   20 MLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFI 104

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR46 | SMALL AUXIN UPREGULATED RNA 46 | chr2:15553732-15554106 FORWARD LENGTH=124)

HSP 1 Score: 82.4185 bits (202), Expect = 4.231e-21
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTH 89
            + W ++K A     + +P DVP+GHL V VGE  +RFVI  + L HP+ Q LLD+A + YGF+    L IPC+E  F D++   G   H
Sbjct:   34 ICWAFKKEA-----EVIPRDVPKGHLVVYVGEEYKRFVININLLKHPLFQALLDQAQDAYGFSADSRLWIPCNESTFLDVVRCAGAPQH 117

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR40 | SMALL AUXIN UPREGULATED 40 | chr1:29771319-29771723 FORWARD LENGTH=134)

HSP 1 Score: 73.1738 bits (178), Expect = 2.021e-17
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0

Query:   17 LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGG 87
            + S VP GH+ V VGE   RFV+ A+ LNHPV   LL+ + + YG+ + G L IPC+ F+FE ++  L  G
Sbjct:   44 VASSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVESLRSG 114

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR57 | SMALL AUXIN UPREGULATED RNA 57 | chr3:19742923-19743297 FORWARD LENGTH=124)

HSP 1 Score: 72.4034 bits (176), Expect = 2.936e-17
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   17 LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQ 91
            +P DVPRGHL V VG+  +RFVI+   L HP+ + LLD+A + Y    S  L IPCDE  F D++   G   H +
Sbjct:   48 IPKDVPRGHLVVYVGDDYKRFVIKMSLLTHPIFKALLDQAQDAYN---SSRLWIPCDENTFLDVVRCSGAPQHQR 119

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR57 | SMALL AUXIN UPREGULATED RNA 57 | chr3:19742830-19743297 FORWARD LENGTH=155)

HSP 1 Score: 72.7886 bits (177), Expect = 4.757e-17
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQ 91
            ++W ++K       + +P DVPRGHL V VG+  +RFVI+   L HP+ + LLD+A + Y    S  L IPCDE  F D++   G   H +
Sbjct:   68 VSWGFKKE-----NEAIPKDVPRGHLVVYVGDDYKRFVIKMSLLTHPIFKALLDQAQDAYN---SSRLWIPCDENTFLDVVRCSGAPQHQR 150

[Close]

BLAST of rna-XM_004497538.3 vs. Araport11
Match: | (Symbols: SAUR12 | SMALL AUXIN UPREGULATED RNA 12 | chr2:9089380-9089694 FORWARD LENGTH=104)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-16
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0

Query:    7 KNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLG 85
            KN C  +   LP DVP+GH  V VGE   R+++   +L HP  + LL +A E +GFN    L IPC+E +F  +   +G
Sbjct:   27 KNQCY-DEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMIG 104

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|O64538|SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-16
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0

Query:   17 LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGG 87
            + S VP GH+ V VGE   RFV+ A+ LNHPV   LL+ + + YG+ + G L IPC+ F+FE ++  L  G
Sbjct:   44 VASSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVESLRSG 114

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SIG9|SAU12_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 12 OS=Arabidopsis thaliana OX=3702 GN=SAUR12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-15
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0

Query:    7 KNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLG 85
            KN C  +   LP DVP+GH  V VGE   R+++   +L HP  + LL +A E +GFN    L IPC+E +F  +   +G
Sbjct:   27 KNQCY-DEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMIG 104

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.771e-15
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 0

Query:   10 CSGNGKK---------LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL 84
            CS  GKK         LP DVP+GH  V VGE   R+++   +L HP  Q LL  A E +GF+    L IPCDE +F+ +   +
Sbjct:   23 CSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LTV3|SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.003e-15
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 0

Query:    7 KNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGG 87
            +++ +   KK  S VP GH+ V VG+   RFV+ A+ LNHPV   LL+ + + YG+ + G L IPC   +FE I+  L  G
Sbjct:   36 RSSVTRRSKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESLRLG 116

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|P33083|AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.261e-14
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 0

Query:    6 RKNACSGN-GKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNK-SGPLAIPCDEFLFEDILHFL 84
            RK + S N       DV +G+LAV VGE  RRFVI   YLN P  Q LL +A E +G++  +G L IPC E +F+ I  FL
Sbjct:    9 RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SGU2|SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.674e-14
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0

Query:    4 MWRKNACSGNGKKLP--SDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGG 87
            + R  +  G  KK    S VP GH+ V VG    RFV+ A+ LNHPV   LL ++ + YG+ + G L IPC   +FE IL  L  G
Sbjct:   19 LLRSESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILESLRLG 104

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|P0DKL1|SAU50_HELAN (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.402e-13
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 0

Query:   10 CSGNGKK-----LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLF 77
            CS  GK      LP+DVP+GH  V VGE   R+++    L+HP  Q LL  + E +GFN    + IPC E  F
Sbjct:   23 CSSFGKNNDDSGLPNDVPKGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQEVDF 95

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|P33081|AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.276e-13
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0

Query:   19 SDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFN-KSGPLAIPCDEFLFEDILHFL 84
            +D P+G+LAV VGE  +RFVI   YLN P  Q LL +A E +G++   G L IPC E +F+ I   L
Sbjct:   15 ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9T0J3|SAU16_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 16 OS=Arabidopsis thaliana OX=3702 GN=SAUR16 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.478e-13
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 0

Query:   10 CSGNGKK-------LPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGF-NKSGPLAIPCDEFLF 77
            CS  GKK       LP DVP+GH  V VGE   R+++   +L HP    LL +A E +GF +  G L IPC+E +F
Sbjct:   22 CSSLGKKQCYDEEGLPLDVPKGHFPVYVGEKRTRYIVPISFLTHPEFLILLQQAEEEFGFRHDMGGLTIPCEEVVF 97

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Match: sp|P32295|ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.205e-13
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0

Query:   20 DVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKS-GPLAIPCDEFLFEDILHFLGG 86
            D P+G+LAV VGE  +RFVI   +LN P+ Q LL +A E +G++   G L IPC E LF+ I   L  
Sbjct:   24 DAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLSA 91

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y2T2|A0A1S2Y2T2_CICAR (Auxin-induced protein 6B-like OS=Cicer arietinum OX=3827 GN=LOC101510919 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 7.518e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH 127
            MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH
Sbjct:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH 127

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MZE6|A0A2Z6MZE6_TRISU (Auxin-induced protein OS=Trifolium subterraneum OX=3900 GN=TSUD_22900 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.485e-72
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH 127
            M  MWRKNAC  NGKKLPSDVPRGHLAV VGEANRRFVIRADYLNHPVLQQLLD+A EGYGFNKSGPLAIPCDEFLFEDILH LGGGT T+R SS +L KKL+L FSKD+ PLLE FDSKRSN YKH
Sbjct:    1 MACMWRKNAC--NGKKLPSDVPRGHLAVIVGEANRRFVIRADYLNHPVLQQLLDQACEGYGFNKSGPLAIPCDEFLFEDILHSLGGGTRTRRSSSPVLKKKLDLCFSKDSVPLLEIFDSKRSNNYKH 125

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|Q1SN26|Q1SN26_MEDTR (Auxin responsive SAUR protein OS=Medicago truncatula OX=3880 GN=11425044 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.900e-70
Identity = 105/127 (82.68%), Postives = 112/127 (88.19%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH 127
            M  MWRKNACSG  KKLPSDVPRGHLAVTVGE NRRFVIRADYLNHPVLQ+LLD+AYEGYGFNKSGPL+IPCDEFLFEDIL  LGGGT  +R SS +L KKL+LSF KDA PLLEAFDSKRSN YK+
Sbjct:    1 MACMWRKNACSG--KKLPSDVPRGHLAVTVGETNRRFVIRADYLNHPVLQELLDQAYEGYGFNKSGPLSIPCDEFLFEDILLSLGGGTVARRSSSPVLTKKLDLSFLKDAVPLLEAFDSKRSNNYKN 125

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NMU9|A0A2K3NMU9_TRIPR (Auxin-induced protein 6B OS=Trifolium pratense OX=57577 GN=L195_g000757 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.217e-69
Identity = 103/127 (81.10%), Postives = 110/127 (86.61%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKRSNKYKH 127
            M  MWRKNACSG  KKLPSDVPRGHLAV VGEANRRFVIRADYLNHP+LQQLLD+AYEG+GFNKSGPLAIPCDEFLFEDIL  LG GT T+R SS +L KKL+L FSKD+ PLLE FD KRSN YKH
Sbjct:    1 MACMWRKNACSG--KKLPSDVPRGHLAVIVGEANRRFVIRADYLNHPLLQQLLDQAYEGHGFNKSGPLAIPCDEFLFEDILQSLGRGTRTRRSSSPVLTKKLDLCFSKDSVPLLEVFDRKRSNNYKH 125

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8M5E4|A0A8B8M5E4_ABRPR (Auxin-responsive protein SAUR50-like OS=Abrus precatorius OX=3816 GN=LOC113870875 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.375e-53
Identity = 87/123 (70.73%), Postives = 99/123 (80.49%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEA-YEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSS-HILMKKLELSFSKDAAPLL-EAFDSK 120
            M+ MWRKN C G+ KK P+DVPRGHLAVTVGEA RRFVIRADYLNHP+LQQLL++A YEGYGFNKSGPLAIPCDEFLFE+I+  L    H +R SS H+ +K L  SFSKD+ PLL   FDSK
Sbjct:    1 MSCMWRKNGCGGSEKKPPADVPRGHLAVTVGEAKRRFVIRADYLNHPLLQQLLEQASYEGYGFNKSGPLAIPCDEFLFENIIQSLQRQPHARRSSSTHVPLKNLHHSFSKDSLPLLHHGFDSK 123

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A151U3A9|A0A151U3A9_CAJCA (Indole-3-acetic acid-induced protein ARG7 OS=Cajanus cajan OX=3821 GN=KK1_006434 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.615e-51
Identity = 81/113 (71.68%), Postives = 91/113 (80.53%), Query Frame = 0

Query:    4 MWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEA 116
            MW KNAC G+GKK P+DVPRGHLAV VGEA RRFVIRADYLNHP+LQQLL++AYEG GFNKSGPLAIPCDEFLFEDI+  L  GT     S+H+ +KKL L  SKD  PLL+ 
Sbjct:    1 MWLKNACGGSGKKPPADVPRGHLAVAVGEAKRRFVIRADYLNHPLLQQLLEQAYEGKGFNKSGPLAIPCDEFLFEDIIQTLRDGTS----STHVPLKKLHLPLSKDTLPLLQG 109

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9C6TGZ2|A0A9C6TGZ2_ARADU (Auxin-responsive protein SAUR50-like OS=Arachis duranensis OX=130453 GN=LOC127745018 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.462e-50
Identity = 89/130 (68.46%), Postives = 102/130 (78.46%), Query Frame = 0

Query:    1 MTWMWRKNACSGNG--KKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL-GGGT--HTQRPSS-HILMKKLELSFSKDAAPLLEAFDSKRSNK 124
            M  MW K ACSG G  KKLP+DVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLD+ YEG+GFNKSGPL+IPCDEFLFEDI+  L GGGT   ++RPS  H+ M        K++ PLL +FDSKR ++
Sbjct:    1 MACMWLKQACSGGGCGKKLPADVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDQ-YEGHGFNKSGPLSIPCDEFLFEDIIQSLRGGGTAAESRRPSCPHVPM--------KESTPLLHSFDSKRRSR 121

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445E725|A0A445E725_ARAHY (Auxin-induced protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g005576 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.462e-50
Identity = 89/130 (68.46%), Postives = 102/130 (78.46%), Query Frame = 0

Query:    1 MTWMWRKNACSGNG--KKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFL-GGGT--HTQRPSS-HILMKKLELSFSKDAAPLLEAFDSKRSNK 124
            M  MW K ACSG G  KKLP+DVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLD+ YEG+GFNKSGPL+IPCDEFLFEDI+  L GGGT   ++RPS  H+ M        K++ PLL +FDSKR ++
Sbjct:    1 MACMWLKQACSGGGCGKKLPADVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDQ-YEGHGFNKSGPLSIPCDEFLFEDIIQSLRGGGTAAESRRPSCPHVPM--------KESTPLLHSFDSKRRSR 121

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445HG29|A0A445HG29_GLYSO (Auxin-responsive protein SAUR40 OS=Glycine soja OX=3848 GN=D0Y65_036746 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.012e-49
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKR 121
            M  MW KNA  G+GKK P+DVPRGHLAV VGEA RRFVIRADYLNHP+LQQLLD+ YEGYGFNKSGPLAIPCDEFLFEDI+  L  GT     SSH+ +KKL+  FSKD+ PLL+  +SKR
Sbjct:    1 MACMWLKNASGGSGKKPPTDVPRGHLAVIVGEAKRRFVIRADYLNHPLLQQLLDQLYEGYGFNKSGPLAIPCDEFLFEDIIQTLRDGTS----SSHVPLKKLDFGFSKDSMPLLQGLESKR 117

[Close]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Match: tr|I1LZE5|I1LZE5_SOYBN (Auxin-induced protein OS=Glycine max OX=3847 GN=100777611 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.344e-49
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = 0

Query:    1 MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMKKLELSFSKDAAPLLEAFDSKR 121
            M  MW KNA  G+GKK P+DVPRGHLAV VGEA RRFVIRADYLNHP+LQQLLD+ YEGYGFNKSGPLAIPCDEFLFEDI+  L  GT     SSH+ +KKL+  FSKD+ PLL+  +SKR
Sbjct:    1 MACMWLKNARGGSGKKPPTDVPRGHLAVIVGEAKRRFVIRADYLNHPLLQQLLDQLYEGYGFNKSGPLAIPCDEFLFEDIIQTLRDGTS----SSHVPLKKLDFGFSKDSMPLLQGLESKR 117

The following BLAST results are available for this feature:

BLAST of rna-XM_004497538.3 vs. Araport11
BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL

BLAST of rna-XM_004497538.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
\|	6.835e-28	56.47	Symbols: SAUR49 \| SMALL AUXIN UPREGULATED RNA 49 \|...	[more]
\|	6.835e-28	56.47	Symbols: SAUR49 \| SMALL AUXIN UPREGULATED RNA 49 \|...	[more]
\|	9.645e-26	50.59	Symbols: SAUR53 \| SMALL AUXIN UPREGULATED RNA 53 \|...	[more]
\|	2.800e-25	52.33	Symbols: SAUR52 \| SMALL AUXIN UPREGULATED RNA 52 \|...	[more]
\|	1.417e-24	50.59	Symbols: SAUR69 \| SMALL AUXIN UPREGULATED RNA 69 \|...	[more]
\|	4.231e-21	42.70	Symbols: SAUR46 \| SMALL AUXIN UPREGULATED RNA 46 \|...	[more]
\|	2.021e-17	45.07	Symbols: SAUR40 \| SMALL AUXIN UPREGULATED 40 \| chr...	[more]
\|	2.936e-17	45.33	Symbols: SAUR57 \| SMALL AUXIN UPREGULATED RNA 57 \|...	[more]
\|	4.757e-17	39.56	Symbols: SAUR57 \| SMALL AUXIN UPREGULATED RNA 57 \|...	[more]
\|	1.085e-16	40.51	Symbols: SAUR12 \| SMALL AUXIN UPREGULATED RNA 12 \|...	[more]

BLAST of rna-XM_004497538.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
sp\|O64538\|SAU40_ARATH	1.946e-16	45.07	Auxin-responsive protein SAUR40 OS=Arabidopsis tha...	[more]
sp\|Q9SIG9\|SAU12_ARATH	1.043e-15	40.51	Protein SMALL AUXIN UP-REGULATED RNA 12 OS=Arabido...	[more]
sp\|O65695\|SAU50_ARATH	1.771e-15	40.48	Auxin-responsive protein SAUR50 OS=Arabidopsis tha...	[more]
sp\|Q9LTV3\|SAU72_ARATH	2.003e-15	40.74	Auxin-responsive protein SAUR72 OS=Arabidopsis tha...	[more]
sp\|P33083\|AX6B_SOYBN	3.261e-14	46.91	Auxin-induced protein 6B OS=Glycine max OX=3847 PE...	[more]
sp\|Q9SGU2\|SAU71_ARATH	3.674e-14	41.86	Auxin-responsive protein SAUR71 OS=Arabidopsis tha...	[more]
sp\|P0DKL1\|SAU50_HELAN	2.402e-13	42.47	Auxin-responsive protein SAUR50 OS=Helianthus annu...	[more]
sp\|P33081\|AX15A_SOYBN	5.276e-13	47.76	Auxin-induced protein 15A OS=Glycine max OX=3847 P...	[more]
sp\|Q9T0J3\|SAU16_ARATH	5.478e-13	43.42	Protein SMALL AUXIN UP-REGULATED RNA 16 OS=Arabido...	[more]
sp\|P32295\|ARG7_VIGRR	6.205e-13	47.06	Indole-3-acetic acid-induced protein ARG7 OS=Vigna...	[more]

BLAST of rna-XM_004497538.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2Y2T2\|A0A1S2Y2T2_CICAR	7.518e-91	100.00	Auxin-induced protein 6B-like OS=Cicer arietinum O...	[more]
tr\|A0A2Z6MZE6\|A0A2Z6MZE6_TRISU	4.485e-72	84.25	Auxin-induced protein OS=Trifolium subterraneum OX...	[more]
tr\|Q1SN26\|Q1SN26_MEDTR	3.900e-70	82.68	Auxin responsive SAUR protein OS=Medicago truncatu...	[more]
tr\|A0A2K3NMU9\|A0A2K3NMU9_TRIPR	4.217e-69	81.10	Auxin-induced protein 6B OS=Trifolium pratense OX=...	[more]
tr\|A0A8B8M5E4\|A0A8B8M5E4_ABRPR	7.375e-53	70.73	Auxin-responsive protein SAUR50-like OS=Abrus prec...	[more]
tr\|A0A151U3A9\|A0A151U3A9_CAJCA	1.615e-51	71.68	Indole-3-acetic acid-induced protein ARG7 OS=Cajan...	[more]
tr\|A0A9C6TGZ2\|A0A9C6TGZ2_ARADU	1.462e-50	68.46	Auxin-responsive protein SAUR50-like OS=Arachis du...	[more]
tr\|A0A445E725\|A0A445E725_ARAHY	1.462e-50	68.46	Auxin-induced protein OS=Arachis hypogaea OX=3818 ...	[more]
tr\|A0A445HG29\|A0A445HG29_GLYSO	3.012e-49	71.07	Auxin-responsive protein SAUR40 OS=Glycine soja OX...	[more]
tr\|I1LZE5\|I1LZE5_SOYBN	8.344e-49	71.07	Auxin-induced protein OS=Glycine max OX=3847 GN=10...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 14..84 e-value: 1.9E-20 score: 84.3
IPR003676	Small auxin-up RNA	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..83

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:21947098..21948116+
coding sequence from alignment at chr4:21947098..21948116+

mRNA sequence

>rna-XM_004497538.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497538.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497538.3; organism=Cicer arietinum; type=mRNA; length=384bp
ATGACATGGATGTGGCGTAAGAATGCCTGCAGCGGCAACGGGAAGAAACT
TCCGTCAGACGTGCCGCGAGGTCACTTGGCCGTGACAGTAGGAGAGGCAA
ACAGGAGGTTTGTGATAAGAGCTGACTACCTGAACCATCCAGTGCTTCAA
CAACTGCTGGATGAGGCGTATGAAGGATACGGCTTCAACAAGAGTGGTCC
TCTGGCTATACCTTGTGATGAGTTCTTATTTGAAGATATTCTTCATTTCC
TTGGAGGAGGAACACACACACAGCGACCCTCTTCCCACATACTTATGAAA
AAGCTAGAGTTGAGCTTTTCCAAAGACGCGGCACCGCTGCTTGAAGCCTT
TGACAGCAAAAGGAGCAACAAATACAAGCATTAA

protein sequence of rna-XM_004497538.3_CaCDCfrontier-NCBI_v1

>rna-XM_004497538.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497538.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497538.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=127bp
MTWMWRKNACSGNGKKLPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQ
QLLDEAYEGYGFNKSGPLAIPCDEFLFEDILHFLGGGTHTQRPSSHILMK
KLELSFSKDAAPLLEAFDSKRSNKYKH

mRNA from alignment at chr4:21947098..21948116+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_004497538.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497538.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497538.3; organism=Cicer arietinum; type=mRNA; length=1019bp; location=Sequence derived from: chr4:21947098..21948116+ (Cicer arietinum
CGGCTCTACGTACAACGGATATACTAAGGTTAATTACATCCTTTTTGTTT
CATTGAAGGCATTTAAGAATTTAGAGGTAtcactaataaaattaatgaaa
agaGTAATAGCAAGTAAGCATGGGACAGAAAGGACTACTACAGCAAACTA
CCATACCCAACCTTTGTCAAAACATTACGGATTTTGGTTTAGTCGTTTTC
CAAAGCACACAAGGTGTCTCAAAACTCGTCAGATGCAAAATAAAGTGCCA
TAATATATGAGTGTAGAGTGTTATCAAATAGCAAAGATAATCCACCACCA
AAAGCCTCACCCTCAATATTTACACTGCAGCTAAAAAAACAAAGTATGAC
ATGGATGTGGCGTAAGAATGCCTGCAGCGGCAACGGGAAGAAACTTCCGT
CAGACGTGCCGCGAGGTCACTTGGCCGTGACAGTAGGAGAGGCAAACAGG
AGGTTTGTGATAAGAGCTGACTACCTGAACCATCCAGTGCTTCAACAACT
GCTGGATGAGGCGTATGAAGGATACGGCTTCAACAAGAGTGGTCCTCTGG
CTATACCTTGTGATGAGTTCTTATTTGAAGATATTCTTCATTTCCTTGGA
GGAGGAACACACACACAGCGACCCTCTTCCCACATACTTATGAAAAAGCT
AGAGTTGAGCTTTTCCAAAGACGCGGCACCGCTGCTTGAAGCCTTTGACA
GCAAAAGGAGCAACAAATACAAGCATTAATCATAACAGTTATTGTAGTAG
TCTAAAGACAACAAGTTTCTCTTTCAGTTTCCTCAGTCTCTTGCATTCAC
TATTGTCCAGAGTAGTTCTTAACAACCAGGTTATATTTCCAATTAAAATC
ATGTCAGCTTGTCCAGTTGCAATATCTACTACCTACTCCCTGTTCATCTG
TAGATGAGTTTGTGCGAGTGTGTGAGTGTGTGAGTGTGTGGCGTGTGTAA
TTCCTTCGTACCTGAGTATGTAATGATGCATGTAtctatttttaacatat
atgatatatgatatatgat

Coding sequence (CDS) from alignment at chr4:21947098..21948116+

>rna-XM_004497538.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497538.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497538.3; organism=Cicer arietinum; type=CDS; length=384bp; location=Sequence derived from: chr4:21947098..21948116+ (Cicer arietinum
ATGACATGGATGTGGCGTAAGAATGCCTGCAGCGGCAACGGGAAGAAACT
TCCGTCAGACGTGCCGCGAGGTCACTTGGCCGTGACAGTAGGAGAGGCAA
ACAGGAGGTTTGTGATAAGAGCTGACTACCTGAACCATCCAGTGCTTCAA
CAACTGCTGGATGAGGCGTATGAAGGATACGGCTTCAACAAGAGTGGTCC
TCTGGCTATACCTTGTGATGAGTTCTTATTTGAAGATATTCTTCATTTCC
TTGGAGGAGGAACACACACACAGCGACCCTCTTCCCACATACTTATGAAA
AAGCTAGAGTTGAGCTTTTCCAAAGACGCGGCACCGCTGCTTGAAGCCTT
TGACAGCAAAAGGAGCAACAAATACAAGCATTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Search form

rna-XM_004497538.3