Ca_19617, Ca_19617_v1.0_kabuli (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_19617 vs. TrEMBL
Match: B0L632_CICAR (Protease inhibitor/seed storage/LTP family protein (Fragment) OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 9.042e-44 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 Query: 76 GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG
Sbjct: 11 GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 96
BLAST of Ca_19617 vs. TrEMBL
Match: G7L5L2_MEDTR (Protease inhibitor/seed storage/LTP family protein OS=Medicago truncatula GN=MTR_7g065160 PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 3.216e-41 Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 1 Query: 1 METLVKFVCLIXXXXXXXXXXXXXX-GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCGR 336
ME L+K +C++ GECG+ TTPDNEAFKL PCASAA+DENASVSQSCCAQVKKLGQNPSCLCAVMLSN AKMSGA+PQIAVTIPKRCN+A RPVGYKCGR
Sbjct: 1 MEGLMKLLCIVGIAVLVAGTHRVESAGECGRGTTPDNEAFKLIPCASAAKDENASVSQSCCAQVKKLGQNPSCLCAVMLSNVAKMSGANPQIAVTIPKRCNLADRPVGYKCGR 113 HSP 2 Score: 103.99 bits (258), Expect = 1.835e-20 Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 88 KSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
K + NEAFKL PCA QVKKLGQNPSCLCAV+LSN AKMSG +PQIA TIPKRCN+A RPVGYKCG
Sbjct: 168 KKVSGYNEAFKLIPCA----------------QVKKLGQNPSCLCAVLLSNVAKMSGVNPQIASTIPKRCNLADRPVGYKCG 233
BLAST of Ca_19617 vs. TrEMBL
Match: I3T0E2_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 1.222e-40 Identity = 83/112 (74.11%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 1 METLVKFVCLIXXXXXXXXXXXXXX-GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME L+K +C++ GECG+ TTPDNEAFKL PCASAA+DENASVSQSCCAQVKKLGQNPSCLCAVMLSN AKMSGA+PQIAVTIPKRCN+A RPVGYKCG
Sbjct: 1 MEGLMKLLCIVGIAVLVAGTHRVESAGECGRGTTPDNEAFKLIPCASAAKDENASVSQSCCAQVKKLGQNPSCLCAVMLSNVAKMSGANPQIAVTIPKRCNLADRPVGYKCG 112
BLAST of Ca_19617 vs. TrEMBL
Match: I1KK52_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.596e-40 Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 1 Query: 76 GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
GECGKSTTPDNEA+KLAPCASAAQDENASVSQSCCAQVKK+GQNPSCLCAV+LSNTAKM+G +PQ+AVTIPKRCN+A RPVGYKCG
Sbjct: 28 GECGKSTTPDNEAYKLAPCASAAQDENASVSQSCCAQVKKIGQNPSCLCAVLLSNTAKMAGVNPQVAVTIPKRCNLANRPVGYKCG 113
BLAST of Ca_19617 vs. TrEMBL
Match: C6SVZ6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.596e-40 Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 1 Query: 76 GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
GECGKSTTPDNEA+KLAPCASAAQDENASVSQSCCAQVKK+GQNPSCLCAV+LSNTAKM+G +PQ+AVTIPKRCN+A RPVGYKCG
Sbjct: 30 GECGKSTTPDNEAYKLAPCASAAQDENASVSQSCCAQVKKIGQNPSCLCAVLLSNTAKMAGVNPQVAVTIPKRCNLANRPVGYKCG 115
BLAST of Ca_19617 vs. TrEMBL
Match: G7L5L7_MEDTR (Protease inhibitor/seed storage/LTP family protein OS=Medicago truncatula GN=MTR_7g065210 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 3.010e-39 Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 1 METLVKFVCLIXXXXXXXXXXXXXX-GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME L+K +CL+ GECG+ TTPD EAFKLAPCASAAQDENASVSQ+CCAQ KKLGQNPSCLCAV+LSN AKMSG +PQIAVTIPKRCN A RPVGYKCG
Sbjct: 1 MEGLMKMLCLVGFVVLVAGIHSVESAGECGRGTTPDMEAFKLAPCASAAQDENASVSQTCCAQTKKLGQNPSCLCAVLLSNVAKMSGVNPQIAVTIPKRCNFANRPVGYKCG 112
BLAST of Ca_19617 vs. TrEMBL
Match: I3SQ11_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 3.328e-38 Identity = 77/115 (66.96%), Postives = 88/115 (76.52%), Query Frame = 1 Query: 1 METLVKFVCLIXXXXXXXXXXXXXX----GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME+ +KF+CL+ GECG+ TTPDNEA KLAPCA+AAQDENASVSQSCCAQVKK QNP CLCAV+LSNTAKMSG DP+IA+TIPKRC+ A RP+GYKCG
Sbjct: 1 MESPIKFICLVGFVVLVVSIAGFHRVEGAGECGRYTTPDNEAMKLAPCAAAAQDENASVSQSCCAQVKKFSQNPGCLCAVLLSNTAKMSGIDPKIAITIPKRCSFANRPIGYKCG 115
BLAST of Ca_19617 vs. TrEMBL
Match: I3SLU7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 3.328e-38 Identity = 77/115 (66.96%), Postives = 88/115 (76.52%), Query Frame = 1 Query: 1 METLVKFVCLIXXXXXXXXXXXXXX----GECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME+ +KF+CL+ GECG+ TTPDNEA KLAPCA+AAQDENASVSQSCCAQVKK QNP CLCAV+LSNTAKMSG DP+IA+TIPKRC+ A RP+GYKCG
Sbjct: 1 MESPIKFICLVGFVVLVVSIAGFHRVEGAGECGRYTTPDNEAMKLAPCATAAQDENASVSQSCCAQVKKFSQNPGCLCAVLLSNTAKMSGIDPKIAITIPKRCSFANRPIGYKCG 115
BLAST of Ca_19617 vs. TrEMBL
Match: I1JLZ2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 4.806e-37 Identity = 74/114 (64.91%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 1 METLVKFVC---LIXXXXXXXXXXXXXXGECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME K VC L+ GECG+STTPDNEA KL PC SAA+DEN V+++CCAQ++KLG+NPSCLCAVMLSNTAKMSGADP++A+TIPKRCN+A RPVGYKCG
Sbjct: 17 MEAYTKVVCILGLLIFVSISDIHRVEGAGECGRSTTPDNEAIKLIPCVSAAKDENVKVTKNCCAQIEKLGKNPSCLCAVMLSNTAKMSGADPKVAITIPKRCNLANRPVGYKCG 130
BLAST of Ca_19617 vs. TrEMBL
Match: C6SYQ6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 4.806e-37 Identity = 74/114 (64.91%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 1 METLVKFVC---LIXXXXXXXXXXXXXXGECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCG 333
ME K VC L+ GECG+STTPDNEA KL PC SAA+DEN V+++CCAQ++KLG+NPSCLCAVMLSNTAKMSGADP++A+TIPKRCN+A RPVGYKCG
Sbjct: 1 MEAYTKVVCILGLLIFVSISDIHRVEGAGECGRSTTPDNEAIKLIPCVSAAKDENVKVTKNCCAQIEKLGKNPSCLCAVMLSNTAKMSGADPKVAITIPKRCNLANRPVGYKCG 114 The following BLAST results are available for this feature:
BLAST of Ca_19617 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25 Position : 0 Zoom : x 1
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BLAST of Ca_19617 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0 Position : 0 Zoom : x 1
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_19617_v1.0_kabuli ID=Ca_19617_v1.0_kabuli; Name=Ca_19617; organism=Cicer arietinum; type=mRNA; length=348bpback to top protein sequence of Ca_19617_v1.0_kabuli >Ca_19617_v1.0_kabuli ID=Ca_19617_v1.0_kabuli; Name=Ca_19617_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=115bpback to top mRNA from alignment at Ca3:18331358..18331705- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_19617_v1.0_kabuli ID=Ca_19617_v1.0_kabuli; Name=Ca_19617; organism=Cicer arietinum; type=mRNA; length=348bp; location=Sequence derived from: Ca3:18331358..18331705- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:18331358..18331705- >Ca_19617_v1.0_kabuli ID=Ca_19617_v1.0_kabuli; Name=Ca_19617; organism=Cicer arietinum; type=CDS; length=348bp; location=Sequence derived from: Ca3:18331358..18331705- (Cicer arietinumback to top |