Ca_08235, Ca_08235_v1.0_kabuli (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_08235 vs. SwissProt
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 2.766e-56 Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAY +KPTK GLE EQIHKIRITLSSK+V+NLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVEVTIAD+
Sbjct: 1 MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
BLAST of Ca_08235 vs. SwissProt
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 2.342e-55 Identity = 106/121 (87.60%), Postives = 113/121 (93.39%), Query Frame = 1 Query: 4 AYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
AY +KP K GLE+ EQIHKIRITLSSK+V+NLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVEVTIAD+
Sbjct: 4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
BLAST of Ca_08235 vs. SwissProt
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2) HSP 1 Score: 192.586 bits (488), Expect = 5.586e-49 Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 1 Query: 1 MAYAA-VKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIAD 363
+AYA +K K G E SQE H+IRITLSSK V+NLEKVC DLV+GAKDK L+VKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct: 6 VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
BLAST of Ca_08235 vs. SwissProt
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.020e-42 Identity = 79/108 (73.15%), Postives = 99/108 (91.67%), Query Frame = 1 Query: 43 DSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
D + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 12 DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.273e-42 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.273e-42 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.273e-42 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.273e-42 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.273e-42 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. SwissProt
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 1.474e-41 Identity = 80/118 (67.80%), Postives = 101/118 (85.59%), Query Frame = 1 Query: 13 AVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
A K T + + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITT K+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. TrEMBL
Match: I3T0A3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 3.106e-60 Identity = 116/122 (95.08%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTKPGLE+S EQIHKIRITLSSKHVQNLEKVC+DL+RGAKDKRLRVKGPVR+PTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 1 MAYAAMKPTKPGLEESGEQIHKIRITLSSKHVQNLEKVCSDLIRGAKDKRLRVKGPVRIPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
BLAST of Ca_08235 vs. TrEMBL
Match: I1M7C7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.056e-60 Identity = 117/122 (95.90%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTKPGLE+SQEQIHKIRITLSSK+V+NLEKVCADLVRGAKDK LRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 1 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
BLAST of Ca_08235 vs. TrEMBL
Match: G7JPA9_MEDTR (40S ribosomal protein S20-2 OS=Medicago truncatula GN=MTR_4g034030 PE=2 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.056e-60 Identity = 116/122 (95.08%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTKPGLE+SQEQIHKIRITLSSKHVQNLEKVC+DLVRGAKDK LRVKGPVRMPTKVL+ITTRK+PCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 1 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVQNLEKVCSDLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
BLAST of Ca_08235 vs. TrEMBL
Match: A2Q4V6_MEDTR (40S ribosomal protein S20-2 OS=Medicago truncatula GN=MTR_7g092720 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 5.298e-60 Identity = 116/122 (95.08%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTKPGLE+SQEQIHKIRITLSSKHV+NLEKVCADLVRGAKDK LRVKGPVRMPTKVL+ITTRK+PCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 1 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
BLAST of Ca_08235 vs. TrEMBL
Match: I1N954_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 3.434e-59 Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 1 Query: 7 YAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
YAA+KPTKPGLE+SQEQIHKIRITLSSKHV+NLEKVCADLVRGA DKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 4 YAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGATDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
BLAST of Ca_08235 vs. TrEMBL
Match: I1LFQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 4.485e-59 Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTK GLE+ QEQIHKIRITLSSK+V+NLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKR+IDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 1 MAYAAMKPTKAGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRIIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
BLAST of Ca_08235 vs. TrEMBL
Match: C6SZK0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 4.485e-59 Identity = 114/120 (95.00%), Postives = 119/120 (99.17%), Query Frame = 1 Query: 7 YAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
YAA+KPTKPGLE+SQEQ+HKIRITLSSKHV+NLEKVCADLVRGA DKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 4 YAAMKPTKPGLEESQEQVHKIRITLSSKHVKNLEKVCADLVRGATDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
BLAST of Ca_08235 vs. TrEMBL
Match: M0ZK92_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000965 PE=3 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 7.650e-59 Identity = 113/122 (92.62%), Postives = 121/122 (99.18%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAYAA+KPTKPGLE+ QEQ+HKIRITLSSK+V+NLEKVCADLVRGAKDKRL+VKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVEVTIAD+
Sbjct: 1 MAYAAMKPTKPGLEEPQEQVHKIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
BLAST of Ca_08235 vs. TrEMBL
Match: C6T0U3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 7.650e-59 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 Query: 7 YAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
YAA+KP KPGLE+SQEQIHKIRITLSSKHV+NLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 4 YAAMKPNKPGLEESQEQIHKIRITLSSKHVKNLEKVCGDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
BLAST of Ca_08235 vs. TrEMBL
Match: C6SY25_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 7.650e-59 Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 Query: 7 YAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
YAA+KPTKPGLE+ QEQIHKIRITLSSKHV+NLEKVCADLVRGAKDKRLRVKGPVRMPTKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA
Sbjct: 4 YAAMKPTKPGLEEPQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
BLAST of Ca_08235 vs. DB:Swiss
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 4.603e-75 Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1 Query: 1 MAYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
MAY +KPTK GLE EQIHKIRITLSSK+V+NLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVEVTIAD+
Sbjct: 1 MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
BLAST of Ca_08235 vs. DB:Swiss
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 1.172e-73 Identity = 106/121 (87.60%), Postives = 113/121 (93.39%), Query Frame = 1 Query: 4 AYAAVKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
AY +KP K GLE+ EQIHKIRITLSSK+V+NLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVEVTIAD+
Sbjct: 4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 1.978e-65 Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 1 Query: 1 MAYAA-VKPTKPGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIAD 363
+AYA +K K G E SQE H+IRITLSSK V+NLEKVC DLV+GAKDK L+VKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct: 6 VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 3.770e-56 Identity = 79/108 (73.15%), Postives = 99/108 (91.67%), Query Frame = 1 Query: 43 DSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
D + IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 12 DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus OX=10116 GN=Rps20 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.534e-55 Identity = 78/103 (75.73%), Postives = 97/103 (94.17%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus OX=10090 GN=Rps20 PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.534e-55 Identity = 78/103 (75.73%), Postives = 97/103 (94.17%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis OX=9541 GN=RPS20 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.534e-55 Identity = 78/103 (75.73%), Postives = 97/103 (94.17%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.534e-55 Identity = 78/103 (75.73%), Postives = 97/103 (94.17%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.534e-55 Identity = 78/103 (75.73%), Postives = 97/103 (94.17%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of Ca_08235 vs. DB:Swiss
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii OX=9601 GN=RPS20 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.429e-54 Identity = 77/103 (74.76%), Postives = 96/103 (93.20%), Query Frame = 1 Query: 58 IHKIRITLSSKHVQNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 366
IH+IRITL+S++V++LEKVCADL+RGAK+K L+VKGPVRMPTK L ITT K+PCGEG+ TWDRF++R+HKR+IDL+S ++VKQITSI+IEPGVEVEVTIADA
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119 The following BLAST results are available for this feature:
BLAST of Ca_08235 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 25 Position : 0 Zoom : x 1
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BLAST of Ca_08235 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25 Position : 0 Zoom : x 1
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BLAST of Ca_08235 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 10 Position : 0 Zoom : x 1
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_08235_v1.0_kabuli ID=Ca_08235_v1.0_kabuli; Name=Ca_08235; organism=Cicer arietinum; type=mRNA; length=369bpback to top protein sequence of Ca_08235_v1.0_kabuli >Ca_08235_v1.0_kabuli ID=Ca_08235_v1.0_kabuli; Name=Ca_08235_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=122bpback to top mRNA from alignment at Ca3:26725442..26726832- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_08235_v1.0_kabuli ID=Ca_08235_v1.0_kabuli; Name=Ca_08235; organism=Cicer arietinum; type=mRNA; length=1391bp; location=Sequence derived from: Ca3:26725442..26726832- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:26725442..26726832- >Ca_08235_v1.0_kabuli ID=Ca_08235_v1.0_kabuli; Name=Ca_08235; organism=Cicer arietinum; type=CDS; length=369bp; location=Sequence derived from: Ca3:26725442..26726832- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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