Ca_03663, Ca_03663_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_03663
Unique NameCa_03663_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length756
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4chromosomeCa4:5862152..5864547 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR253Pisum sativum Cameor genome v1aPisum sativum
capsR263Pisum sativum Cameor genome v1aPisum sativum
capsR277Pisum sativum Cameor genome v1aPisum sativum
cavuR255Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR298Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR307Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR360Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR362Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0431Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0448Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0475Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0514Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0443Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0634Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0697Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0826Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0828Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0845Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1121Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL037Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL189Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL409Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL501Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR247Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR257Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR289Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR286Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR335Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR344Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR345Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR347Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR349Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR262Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR288Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR361Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR332Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR366Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR373Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR380Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR240Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR280Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR282Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR118Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR121Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR125Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR157Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL136Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL257Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL377Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL481Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL542Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR275Cicer arietinum
cacarR278Cicer arietinum
cacarR286Cicer arietinum
cacarR342Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg31451.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g072400.2Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan03g284500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G207100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.5g130120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g088160.2Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va03G081050.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat03G0098200-T3Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_027222Cajanus cajan Asha genome v1.0Cajanus cajan
jg3276.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat06G0408500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat6g150760.3Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.5g162920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014640382.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_006981Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun07g144200.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr01.1824.1.62113178Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.007G197400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004495640.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_012714176.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_03663-CDS1Ca_03663-CDS1Cicer arietinumCDS
Ca_03663-CDS2Ca_03663-CDS2Cicer arietinumCDS
Ca_03663-CDS3Ca_03663-CDS3Cicer arietinumCDS
Ca_03663-CDS4Ca_03663-CDS4Cicer arietinumCDS
Ca_03663-CDS5Ca_03663-CDS5Cicer arietinumCDS
Ca_03663-CDS6Ca_03663-CDS6Cicer arietinumCDS
Ca_03663-CDS7Ca_03663-CDS7Cicer arietinumCDS
Ca_03663-CDS8Ca_03663-CDS8Cicer arietinumCDS
Ca_03663-CDS9Ca_03663-CDS9Cicer arietinumCDS
Ca_03663-CDS10Ca_03663-CDS10Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_03663_v1.0_kabuliCa_03663_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.713e-62
Identity = 120/194 (61.86%), Postives = 136/194 (70.10%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSV--------XXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS RSSRT+YVGNLPGDIR REVEDLF KYGP+V IDLK+PP+PPGYAFVEF+DARDA+DAI            LRVELAHGGRR+S                                  LVTGLP SASWQDLKDHMRK GDVCFSQV+R+  G TG+VDYT Y+D+KYA++KLDD+EFRNAFS  Y+RVRE
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVRE 194
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRS1B_DANRE (Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.146e-36
Identity = 85/186 (45.70%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNS-SSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR ++VED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ VFR+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   10 AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_CHICK (Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.109e-36
Identity = 84/186 (45.16%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ VFR+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_PONAB (Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.196e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_PIG (Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.196e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_MOUSE (Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.196e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_HUMAN (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.196e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRSF1_BOVIN (Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.196e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGR-RNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                              +V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.562e-35
Identity = 87/196 (44.39%), Postives = 112/196 (57.14%), Query Frame = 1 
Query:    7 GRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHG-GRRNSSSVXXXXXXXXXXXXXXXXXXXXXXX----------LVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVRE 558
            G   + +YVGNLPGD+R +EVED+F+KYG I  +D+K   + P +AFVEFED RDA+DA+            +RVE   G G R                                      +V GLPP+ SWQDLKDHMR AGDVC++ V R+    TG+V++T Y+DVKYAVRKLDD++FR +    AYIRVRE
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
[Close]
BLAST of Ca_03663 vs. SwissProt
Match: SRS1A_DANRE (Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.934e-35
Identity = 85/196 (43.37%), Postives = 110/196 (56.12%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRR-----------NSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR ++VED+FYKYG I DIDLK     P +AFVEFED RDA+DA+            LRVE    GR                                        +V+GLPPS SWQDLKDHMR+AGDVC++ VFR+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   10 AGSNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: I3SZD8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:    1 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 186
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: G7I8Q6_MEDTR (Pre-mRNA-splicing factor SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:   32 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 217
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: G7I8Q5_MEDTR (Pre-mRNA-splicing factor SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:   32 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 217
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: G7I8Q4_MEDTR (Pre-mRNA-splicing factor SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:   32 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 217
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: G7I8Q3_MEDTR (Pre-mRNA-splicing factor SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:   32 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 217
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: B7FKD2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 9.401e-74
Identity = 144/186 (77.42%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAI            L VELAHGGR +SSSV                       LVTGLPPSASWQDLKDHMRKAG VCFSQVFRERGGLTGIVDYTNYDDVKYA+RKLDDSEFRNAFSR+YIRVRE
Sbjct:    1 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRSYIRVRE 186
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: I1NJ19_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 2.735e-73
Identity = 140/186 (75.27%), Postives = 149/186 (80.11%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGRSSRT+YVGNLPGD+R+REVEDLFYKYGPIVDIDLKIPP+PPGYAFVEFEDARDA+DAI            LRVELAHGGR  SSSV                       LVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGG+TGIVDYTNYDD+KYA+RKLDDSEFRNAFSRA+IRVRE
Sbjct:    1 MSGRSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGGSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAFIRVRE 186
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: B9I7H7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_773626 PE=4 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.697e-70
Identity = 134/183 (73.22%), Postives = 146/183 (79.78%), Query Frame = 1 
Query:   10 RSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            R+SRTLYVGNLPGDIR+REVEDLFYKYGPIVDIDLKIPP+PPGYAFVEFE+ARDA+DAI            LRVELAHGGRR+SS V                       LVTGLP SASWQDLKDHMR+AGDVCFSQVFR+RGG+TGIVDYTNYDD+KYA++KLDDSEFRNAFSRAYIRVRE
Sbjct:    3 RASRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYNFDGCRLRVELAHGGRRHSSPVDHYSSYSGSSGSRGPSKRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYIRVRE 185
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: M5W0G3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 8.236e-70
Identity = 131/186 (70.43%), Postives = 147/186 (79.03%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS RSSRT+YVGNLPGDIRMRE+EDLF KYGPIVDIDLK+PP+PPGYAF+EFEDARDA DAI            LRVELAHGGR +SSS+                       LVTGLPPSASWQDLKDHMR+AGDVCFSQVFR++GG+TGIVDYTNYDD++YA+RKLDDSEF+NAFSRAYIRV+E
Sbjct:    1 MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADDAIYGRDGYNFDGYRLRVELAHGGRGHSSSMDRYSSYSHSSSSRGASRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSRAYIRVKE 186
[Close]
BLAST of Ca_03663 vs. TrEMBL
Match: M5VZF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 8.236e-70
Identity = 131/186 (70.43%), Postives = 147/186 (79.03%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS RSSRT+YVGNLPGDIRMRE+EDLF KYGPIVDIDLK+PP+PPGYAF+EFEDARDA DAI            LRVELAHGGR +SSS+                       LVTGLPPSASWQDLKDHMR+AGDVCFSQVFR++GG+TGIVDYTNYDD++YA+RKLDDSEF+NAFSRAYIRV+E
Sbjct:    1 MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADDAIYGRDGYNFDGYRLRVELAHGGRGHSSSMDRYSSYSHSSSSRGASRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSRAYIRVKE 186
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 2.474e-79
Identity = 141/186 (75.81%), Postives = 156/186 (83.87%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS R +RT+YVGNLPGDIR  EVEDLFYKYGPIVDIDLKIPP+PPGYAFVEFED RDA DAIY RDGYDFDG RLRVE+AHGGRR S SVDRYS    +S +           LVTGLPPSASWQDLKDHMRKAGDVCFS+VF +R G++G+VDY+NYDD+KYA+RKLD +EFRNAFS AYIRVRE
Sbjct:    1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRV--LVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRVRE 184
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.917e-76
Identity = 139/194 (71.65%), Postives = 159/194 (81.96%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXX--------XXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS RSSRT+YVGNLPGDIR REVEDLF KYGP+V IDLK+PP+PPGYAFVEF+DARDA+DAI+ RDGYDFDG+RLRVELAHGGRR+S          G  G RG         SRRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+  G TG+VDYT Y+D+KYA++KLDD+EFRNAFS  Y+RVRE
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVRE 194
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.161e-72
Identity = 139/195 (71.28%), Postives = 154/195 (78.97%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXX---------XXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MS RSSRT+YVGNLPGDIR REVEDLF KYGP+V IDLKIPP+PPGYAFVEFEDARDA DAIY RDGYDFDG+ LRVELAHGGRR+S          G  G  G          SRRS+YRV+V+GLP SASWQDLKDHMRK G+VCFSQVFR+  G TGIVDYT+Y+D+KYA   LDD+EFRNAFS  Y+RVRE
Sbjct:    1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDTEFRNAFSHEYVRVRE 192
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 7.853e-68
Identity = 126/197 (63.96%), Postives = 151/197 (76.65%), Query Frame = 1 
Query:    1 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSS-----------VXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVRE 558
            MSGR SR++YVGNLPGDIR  E+ED+FYKYG IVDI+LK+PP+PP Y FVEFE +RDA+DAI  RDGY+ DG RLRVELAHGGR  SSS                   G S   GVSR S++RV+V GLP SASWQDLKDHMRKAGDVCF++V R+  G  G+VDYTNYDD+KYA+RKLDD+EFRN ++R +IRV++
Sbjct:    1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKK 197
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.965e-41
Identity = 102/200 (51.00%), Postives = 130/200 (65.00%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVE--------------LAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVRE 558
             G   + +YVGNLPGD+R +EVED+F+KYG I  +D+K   + P +AFVEFED RDA+DA+  RDGY+FDG R+RVE              L  GG         +    G     G  RR+ YRV+V GLPP+ SWQDLKDHMR AGDVC++ V R+    TG+V++T Y+DVKYAVRKLDD++FR +    AYIRVRE
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGG---DHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD---GTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SRS1B_DANRE (Serine/arginine-rich splicing factor 1B OS=Danio rerio OX=7955 GN=srsf1b PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.726e-39
Identity = 103/186 (55.38%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXX-XXXXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR ++VED+FYKYG I DIDLK     P +AFVEFED RDA+DA+Y RDGYD+DGYRLRVE    GR                G     SRRS+YRV+V+GLPPS SWQDLKDHMR+AGDVC++ VFR+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   10 AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SRSF1_CHICK (Serine/arginine-rich splicing factor 1 OS=Gallus gallus OX=9031 GN=SRSF1 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.807e-39
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXXXXXXXXX-XXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+Y RDGYD+DGYRLRVE    GR                G  G   R    RV+V+GLPPS SWQDLKDHMR+AGDVC++ VFR+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SRSF1_PONAB (Serine/arginine-rich splicing factor 1 OS=Pongo abelii OX=9601 GN=SRSF1 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.682e-39
Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXX-XXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+Y RDGYD+DGYRLRVE    GR                G  G  SRRS+ RV+V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SRSF1_PIG (Serine/arginine-rich splicing factor 1 OS=Sus scrofa OX=9823 GN=SRSF1 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.682e-39
Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXX-XXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+Y RDGYD+DGYRLRVE    GR                G  G  SRRS+ RV+V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of Ca_03663 vs. DB:Swiss
Match: SRSF1_MOUSE (Serine/arginine-rich splicing factor 1 OS=Mus musculus OX=10090 GN=Srsf1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.682e-39
Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:    4 SGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIXXXXXXXXXXXXLRVELAHGGRRNSSSVXXXXXXXXXXXXXX-XXXXXXXXXLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFR-NAFSRAYIRVR 555
            +G +   +YVGNLP DIR +++ED+FYKYG I DIDLK     P +AFVEFED RDA+DA+Y RDGYD+DGYRLRVE    GR                G  G  SRRS+ RV+V+GLPPS SWQDLKDHMR+AGDVC++ V+R+    TG+V++   +D+ YAVRKLD+++FR +    AYIRV+
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
The following BLAST results are available for this feature:
BLAST of Ca_03663 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
SRSF1_ARATH9.713e-6261.86Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SRS1B_DANRE3.146e-3645.70Serine/arginine-rich splicing factor 1B OS=Danio r... [more]
SRSF1_CHICK4.109e-3645.16Serine/arginine-rich splicing factor 1 OS=Gallus g... [more]
SRSF1_PONAB1.196e-3544.62Serine/arginine-rich splicing factor 1 OS=Pongo ab... [more]
SRSF1_PIG1.196e-3544.62Serine/arginine-rich splicing factor 1 OS=Sus scro... [more]
SRSF1_MOUSE1.196e-3544.62Serine/arginine-rich splicing factor 1 OS=Mus musc... [more]
SRSF1_HUMAN1.196e-3544.62Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
SRSF1_BOVIN1.196e-3544.62Serine/arginine-rich splicing factor 1 OS=Bos taur... [more]
RSP3_CAEEL1.562e-3544.39Probable splicing factor, arginine/serine-rich 3 O... [more]
SRS1A_DANRE5.934e-3543.37Serine/arginine-rich splicing factor 1A OS=Danio r... [more]

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BLAST of Ca_03663 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3SZD8_MEDTR9.401e-7477.42Uncharacterized protein OS=Medicago truncatula PE=... [more]
G7I8Q6_MEDTR9.401e-7477.42Pre-mRNA-splicing factor SF2 OS=Medicago truncatul... [more]
G7I8Q5_MEDTR9.401e-7477.42Pre-mRNA-splicing factor SF2 OS=Medicago truncatul... [more]
G7I8Q4_MEDTR9.401e-7477.42Pre-mRNA-splicing factor SF2 OS=Medicago truncatul... [more]
G7I8Q3_MEDTR9.401e-7477.42Pre-mRNA-splicing factor SF2 OS=Medicago truncatul... [more]
B7FKD2_MEDTR9.401e-7477.42Putative uncharacterized protein OS=Medicago trunc... [more]
I1NJ19_SOYBN2.735e-7375.27Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9I7H7_POPTR3.697e-7073.22Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
M5W0G3_PRUPE8.236e-7070.43Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M5VZF1_PRUPE8.236e-7070.43Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of Ca_03663 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SR30_ARATH2.474e-7975.81Serine/arginine-rich splicing factor SR30 OS=Arabi... [more]
SR34_ARATH5.917e-7671.65Serine/arginine-rich-splicing factor SR34 OS=Arabi... [more]
SR34B_ARATH6.161e-7271.28Serine/arginine-rich splicing factor SR34B OS=Arab... [more]
SR34A_ARATH7.853e-6863.96Serine/arginine-rich splicing factor SR34A OS=Arab... [more]
RSP3_CAEEL9.965e-4151.00Probable splicing factor, arginine/serine-rich 3 O... [more]
SRS1B_DANRE1.726e-3955.38Serine/arginine-rich splicing factor 1B OS=Danio r... [more]
SRSF1_CHICK1.807e-3953.23Serine/arginine-rich splicing factor 1 OS=Gallus g... [more]
SRSF1_PONAB7.682e-3954.30Serine/arginine-rich splicing factor 1 OS=Pongo ab... [more]
SRSF1_PIG7.682e-3954.30Serine/arginine-rich splicing factor 1 OS=Sus scro... [more]
SRSF1_MOUSE7.682e-3954.30Serine/arginine-rich splicing factor 1 OS=Mus musc... [more]
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..76
score: 2.6e-16coord: 113..175
score: 7.8
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 8..78
score: 7.1e-22coord: 112..181
score: 4.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..82
score: 17.506coord: 111..189
score: 9
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 4..89
score: 2e-22coord: 100..180
score: 1.8
NoneNo IPR availablePANTHERPTHR10548SPLICING FACTOR, ARGININE/SERINE-RICHcoord: 1..248
score: 8.5
NoneNo IPR availableSEGsegsegcoord: 63..74
score: NAcoord: 91..113
score: NAcoord: 187..231
score: NAcoord: 237..248
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 4..192
score: 3.5
NoneNo IPR availableSEGsegsegcoord: 8..23
score: NAcoord: 60..65
score
NoneNo IPR availableSEGsegsegcoord: 36..45
score
NoneNo IPR availableSEGsegsegcoord: 1..12
score
NoneNo IPR availableSEGsegsegcoord: 22..34
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_03663_v1.0_kabuli ID=Ca_03663_v1.0_kabuli; Name=Ca_03663; organism=Cicer arietinum; type=mRNA; length=756bp
ATGAGTGGCCGATCAAGTCGCACATTATATGTTGGCAATCTTCCTGGTGA
TATTCGCATGAGAGAAGTGGAGGATCTTTTCTACAAGTATGGCCCTATCG
TTGACATTGATTTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTC
GAGTTTGAGGATGCTCGTGATGCTCAAGATGCGATTTACTATAGAGATGG
TTACGATTTTGATGGTTATCGATTACGAGTTGAACTTGCACATGGTGGAC
GCAGAAATTCATCATCTGTGGACCGATACAGTAGGCATAGCGGTAGTAGT
GGTAGTCGTGGAGTTTCTAGGCGATCTGACTATCGTGTTCTGGTGACTGG
ATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAG
CTGGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCTTGACC
GGGATAGTTGATTATACCAATTATGATGATGTGAAATATGCTGTGAGGAA
GCTTGATGACTCGGAATTTCGAAATGCATTTTCTCGGGCATACATACGGG
TGAGGGAATATGATCGGAGTTATTCTAGAAGTCCCAGTCGTGATTCAAGG
AGGAGCTATTCTCGAAGTCGCAGCCCATATATATCACGAAGTCGAAGCCG
TAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAG
CAAAACACTCTCGGCGCTCATTATCTCTTTCAAGGTCAGTTTCTGCCCAA
TCTTGA
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protein sequence of Ca_03663_v1.0_kabuli

>Ca_03663_v1.0_kabuli ID=Ca_03663_v1.0_kabuli; Name=Ca_03663_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=251bp
MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFV
EFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRRNSSSVDRYSRHSGSS
GSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLT
GIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSRDSR
RSYSRSRSPYISRSRSRSLSHSYSGRSRSLSPKAKHSRRSLSLSRSVSAQ
S
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mRNA from alignment at Ca4:5862152..5864547-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_03663_v1.0_kabuli ID=Ca_03663_v1.0_kabuli; Name=Ca_03663; organism=Cicer arietinum; type=mRNA; length=2396bp; location=Sequence derived from: Ca4:5862152..5864547- (Cicer arietinum
ATGAGTGGCCGATCAAGTCGCACATTATATGTTGGCAATCTTCCTGGTGA
TATTCGCATGAGAGAAGTGGAGGATCTTTTCTACAAGGTACTTATATCTA
AGACCATTGTATGCACCGTAGTGCTTTTGACTTCTATGCTGAAAGATACA
CACTTAAGTCATCATCATCACCCTGTTTATGTTCTCTATCAAGTATCATG
TACCATCCCATTATTTGCTTTCACCAAAATACCTGCATACATGACACACA
ATTTATGAAATATAATTGAAGGTCAATATGTCTGGATTTCTATTTCACCA
ATTACTTTCTTCACTGTCTAAATACAGTATGGCCCTATCGTTGACATTGA
TTTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTCGAGGTATGCC
GGAATTTCATTTTGTAAGGATGTGAAGGGGTATTTATCACACCTTTTTTA
GTTCCCTTGTTCTGCCTTATATATTAAACATTATATTGCAGTTTGAGGAT
GCTCGTGATGCTCAAGATGCGATTTACTATAGAGATGGTTACGATTTTGA
TGGTTATCGATTACGAGTTAGAATATTTTCCCTTTTTTCTCTTTTCTCTT
TTTTGCCTCTACGGGACACTATCAAATTTTGTTATATATGAACTTTTGTT
CACTATTTGTTACTGTAGGTTGAACTTGCACATGGTGGACGCAGAAATTC
ATCATCTGTGGACCGATACAGTAGGCATAGCGGTAGTAGTGGTAGTCGTG
GAGTTTCTAGGCGATCTGACTATCGTGGTATGTATTGTTTCCTAGAATAA
TGTTAATAGTTTTTTAAAATTTGTATTATTGTACAATAGTTTATTCTCAT
TTTGTTTGTCTTAATTCCCATTTGCACTTAAAAAGAGAATGTTTTGGTTG
ACCAATTTATTGTCTTTGCAGTTCTGGTGACTGGATTACCTCCTTCTGCT
TCATGGCAAGACCTGAAAGTATGGATTGGTTCATTATTCCTATGACCATT
TGATACTTGCAATTTTTTTTGCTTGCAGGGATTGATTACATTTTACATTG
TATTGGTTGAAAATTAATGAATAATATTTGCTAACTCTGGGTTCTAAATG
ATTAGGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTGTTC
CGTGAGCGTGGAGGTAAGTGGATTTGGATGCATTTTGGAGCGAGTTTTTA
TTTTGTGTACAATGGTTGGTTAATGCAGGGGGGTCCTTTAGATAGAGGAG
AATGCAAAAAGGATATTGCATGCAAAGTGAGGGAGTAAATATGCAGTAGT
TTGATGCGTTGCTGTCAAATAGAAGCTGTAGCGGCACAATAGCGCTATAG
CATAGCAGAATTTGAACAAATCGCTATTGCTCCGCAATACGTTATTTAGT
ACAAGTGTTGTCAAATAGCTGCTATTATGGTGCTATAGCACTATAGCATA
TCGAAATTTGAACAAACCGCTATTTTTTTCGTGATCCACAATTTTCAACA
TTTTGATGATAAGCTTTTCTTTGAGCACAAAATAAGCTAATAAAAAATGT
TGAGGTGTTTATTTTGGTAGTAATTTCTTACCTTGTAATCTCAAGTGGTG
ATGATGTGATATTTATGTAGGGGGCATGACTAAGTTTGGGATACAATAAG
TCCATGAAACAATGCTATTATGTCTAGCCTTTTTGAGCTGATTTATTTCA
TTATTTATTTATTTTTTATAATAGTTTCAATAAACTTTCACCACATAATC
TTAAAGATGGGTATATTTTGTATGCAGGCTTGACCGGGATAGTTGATTAT
ACCAATTATGATGATGTGAAATATGCTGTAAGTATTCTTAACCTGTATCA
TCAATTATATATGTTAGGTTTTGTATGTTGCCTATTCTTGAGCTGGAATT
TTTGTGGCTGCCATTTTGACCAGCACGGTTATTATGCTTCAATAACTTTG
TTTTGTCATACAGGTGAGGAAGCTTGATGACTCGGAATTTCGAAATGCAT
TTTCTCGGGCATACATACGGGTGAGTGGATATTACTTTTGGCTACATTCT
TCATTCTGTTCATGTACTTGCTCTCCGTGACATATCTATCTGGTTGGTTC
AGGTGAGGGAATATGATCGGAGTTATTCTAGAAGTCCCAGTCGTGATTCA
AGGAGGAGCTATTCTCGAAGTCGCAGCCCATATATATCACGAAGTCGAAG
CCGTAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGGTTCATTTTGG
TTGCACCGGTCAAGTATGATTTGTATGTATGTATTACAGTAAATTTGAAT
AATTGATCAAGTGTTAAATTTTGCAGTTTGTCTCCAAAAGCAAAACACTC
TCGGCGCTCATTATCTCTTTCAAGGTCAGTTTCTGCCCAATCTTGA
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Coding sequence (CDS) from alignment at Ca4:5862152..5864547-

>Ca_03663_v1.0_kabuli ID=Ca_03663_v1.0_kabuli; Name=Ca_03663; organism=Cicer arietinum; type=CDS; length=756bp; location=Sequence derived from: Ca4:5862152..5864547- (Cicer arietinum
ATGAGTGGCCGATCAAGTCGCACATTATATGTTGGCAATCTTCCTGGTGA
TATTCGCATGAGAGAAGTGGAGGATCTTTTCTACAAGTATGGCCCTATCG
TTGACATTGATTTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTC
GAGTTTGAGGATGCTCGTGATGCTCAAGATGCGATTTACTATAGAGATGG
TTACGATTTTGATGGTTATCGATTACGAGTTGAACTTGCACATGGTGGAC
GCAGAAATTCATCATCTGTGGACCGATACAGTAGGCATAGCGGTAGTAGT
GGTAGTCGTGGAGTTTCTAGGCGATCTGACTATCGTGTTCTGGTGACTGG
ATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAG
CTGGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCTTGACC
GGGATAGTTGATTATACCAATTATGATGATGTGAAATATGCTGTGAGGAA
GCTTGATGACTCGGAATTTCGAAATGCATTTTCTCGGGCATACATACGGG
TGAGGGAATATGATCGGAGTTATTCTAGAAGTCCCAGTCGTGATTCAAGG
AGGAGCTATTCTCGAAGTCGCAGCCCATATATATCACGAAGTCGAAGCCG
TAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAG
CAAAACACTCTCGGCGCTCATTATCTCTTTCAAGGTCAGTTTCTGCCCAA
TCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K12890SFRS1_9; splicing factor, arginine/serine-rich 1/9
Vocabulary: KEGG PATHWAY
TermDefinition
ko03020RNA polymerase
ko05110Vibrio cholerae infection
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding