Ca_08973.1, Ca_08973.1_ICC4958_v2 (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_08973.1 vs. DB:Swiss
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=2 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 1.944e-107 Identity = 184/226 (81.42%), Postives = 198/226 (87.61%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHK-TAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKIRSXXXXXXXXXVAARIASTG 702
FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGR+RVVS +DRCEIRLED NSGDLFAACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGFAERNEAFDFNVALSDHEKYVRRE +KE+G ++ D+ IDIHPAVNHRLKEGETIRINVK K T GTGMLSAA L+G T KPK L LAPPP AG RSPLPPPPNDPVA+RIAS G
Sbjct: 12 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSES-DNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA-LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDG 231
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 9.489e-47 Identity = 93/214 (43.46%), Postives = 126/214 (58.88%), Query Frame = 1 Query: 16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINV----KHKTAGGTGMLSAAGLTGGHAATPKP---KILNLAPPP 624
E+ +E L V +V VY+IPPR T+ GY+ EW WSGR+R+ ++ I+LED SG+LFA V FPG +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++ E K++ N D P ++ KEG+TI++N+ K + A G + A TGG + P P K L PPP
Sbjct: 2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG--------PKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPAS-TGGLSLLPPPPGGKTSTLIPPP 203
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 2.280e-46 Identity = 92/211 (43.60%), Postives = 124/211 (58.77%), Query Frame = 1 Query: 16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKH--KTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSG 630
E+ +E L V EV VY+IPPR T+ GY+ EW WSGR+R+ ++ I+LED SG+LFA V FPG +VE V DSSRYFV++IEDG G+ AFIGLGF +R +AFDFNVAL DH K+V++ E K++ N D+ P ++ K+G+TI+IN+ + K G G A + G L+L PPP G
Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG--------PKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPTSAGG--------LSLLPPPPG 193
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 7.262e-46 Identity = 91/212 (42.92%), Postives = 123/212 (58.02%), Query Frame = 1 Query: 16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVK--HKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGA 633
E+ +E L V +V VY+IPPR T+ GY+ EW WSGR+R+ ++ I+LED SG+LFA V FPG +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++ E K++ N D P ++ KEG+TI++N+ K G G A + G L+L PPP GA
Sbjct: 2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG--------PKLDLSFKEGQTIKLNIASMKKKDGAAGTPRARPTSTGG--------LSLLPPPPGA 194
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Necap2 PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 7.371e-46 Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 1 Query: 16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKH--KTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKIRS 648
E+ +E L V EV VY+IPPR T+ GY+ EW WSGR+R+ ++ I+LED SG+LFA V FPG +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++ E K++ N D+ P ++ KEG+TI+IN+ + K G G + G L+L PPP G GK+ +
Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG--------PKLDLGFKEGQTIKINIANMRKKEGAAGAPRTRPASAGG--------LSLLPPPPG-GKMST 198
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Necap1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.931e-45 Identity = 87/209 (41.63%), Postives = 126/209 (60.29%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
+E L V +VSVY+IPPR ++ GY+ +W W+GR+R+ S+ I+LED SG+LFA V +PG +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E + E ++D P ++ KEG+TI++++ + TA GGT A+G G P P PPPS + I
Sbjct: 7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK------ESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPRASGTGGLSLLPPPPGGKVTIPPPSSSVAI 206
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus OX=9913 GN=NECAP1 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 4.193e-45 Identity = 89/209 (42.58%), Postives = 129/209 (61.72%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
+E L V +VSVY+IPPR ++ GY+ +W W+GR+R+ S+ I+LED SG+LFA V +PG +VE V DSSRYFV++I+DG G+ AFIG+GF++R +AFDFNV+L DH K+V++E + E ++D P ++ KEG+TI++++ + T GGT AG TGG L+L PPP G GK+
Sbjct: 7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQESEISK------ESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPKTAG-TGG---------LSLLPPPPG-GKV 195
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus OX=10090 GN=Necap1 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.838e-44 Identity = 89/209 (42.58%), Postives = 129/209 (61.72%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
+E L V +VSVY+IPPR ++ GY+ +W W+GR+R+ S+ I+LED SG+LFA V +PG +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E + E ++D P ++ KEG+TI++++ + TA GG A+G TGG L+L PPP G GK+
Sbjct: 7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK------ESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASG-TGG---------LSLLPPPPG-GKV 195
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECAP_DROME (NECAP-like protein CG9132 OS=Drosophila melanogaster OX=7227 GN=CG9132 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 9.065e-44 Identity = 81/207 (39.13%), Postives = 122/207 (58.94%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
+E L+V EV +YKIPPR ++ GY+ G+W + W+GR+R+V++ ++LED SG LFA C + +PG ++E V DSSRYFV++++D G+ AF+GLGF +R+++FD NVAL DH K+V+ N + E + + ++ KEGETI+IN++ G+ S G G + L PPP G GKI
Sbjct: 3 YESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGV---AIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVK--------NQEQIEKEKTEPKQELDLGFKEGETIKINMRITKKDGSEGSSRTGKNKGSSGV-------LPPPPGGLGKI 191
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii OX=9601 GN=NECAP1 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 9.346e-44 Identity = 87/210 (41.43%), Postives = 127/210 (60.48%), Query Frame = 1 Query: 28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRI---NVKHKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
+E L V +VSVY+IPPR ++ GY+ +W W+GR+R+ S+ I+LED SG+LFA V +PG +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E + E ++D P ++ KEG+TI++ N+ +K G + +A G GG L+L PPP G GK+
Sbjct: 7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISK------ESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPRTARG--GG---------LSLLPPPPG-GKV 195 The following BLAST results are available for this feature:
BLAST of Ca_08973.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=mRNA; length=2846bpback to top protein sequence of Ca_08973.1_ICC4958_v2 >Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=280bpback to top mRNA from alignment at Ca_LG_4:11686849..11689694- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=mRNA; length=2846bp; location=Sequence derived from: Ca_LG_4:11686849..11689694- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_4:11686849..11689694- >Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=CDS; length=843bp; location=Sequence derived from: Ca_LG_4:11686849..11689694- (Cicer arietinumback to top |