Transcript Overview
Name Ca_15021.1 Unique Name Ca_15021.1_ICC4958_v2 Type mRNA Organism Cicer arietinum (chickpea) Sequence length 4236
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Ca_15021.1.utr5p1 Ca_15021.1.utr5p1_ICC4958_v2 Cicer arietinum five_prime_UTR
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Ca_15021.1.utr3p1 Ca_15021.1.utr3p1_ICC4958_v2 Cicer arietinum three_prime_UTR
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Ca_15021.1_ICC4958_v2 Ca_15021.1_ICC4958_v2 Cicer arietinum polypeptide
Homology
BLAST of Ca_15021.1 vs. DB:Swiss
Match:
TIF8_ARATH (Protein TIFY 8 OS=Arabidopsis thaliana OX=3702 GN=TIFY8 PE=1 SV=1)
HSP 1 Score: 186.808 bits (473), Expect = 5.318e-54
Identity = 157/414 (37.92%), Postives = 207/414 (50.00%), Query Frame = 1
Query: 94 VLHDFLGMK----PSDTSADVRLPE-----------TSVSASSAGARGPFSTTSETVSEKQVG-NHLEGVPFYGPRSDFTGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNAFGGERSRRPNDDEVLHAMQSMKPSSSSQIFHPPSTTKLDANKWERSILTNIGPSMQHPPRGGQLMTPLAHQLASNKIRDTNAGPSFISQSAADEGSRTGIKGPGVLSSINTSATATDKISSAVLLGGSRPKPLTNIVESFTPPS---QHGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKTTAKLTNESNLHSGENETGLVSNVAFTQ-------EHHGKLSVTGSSSRAVGGLGDRVST-PAGVHQGSIFA--KDTRNPVQAADPSSE 1248
+ HDFLG K S + AD RLP ++ SASSAG G S+TS+ V G NHL+G+ +GPRSD +G+ +SNR GNKRSNSDS F Q P++ H K+LRN G S N+ P PPRGG ++ L HQL++++ +D N GPS I+Q+AADEGSRTG+KGPG+LSS P ++ +ESF P + + L S+++QMTIFYGGQAHVFDDVHP+KADVIMALAGS+GGSWST S K +K +N G + G + ++ E + S +SS R+ T P HQGSI + +D R+PV +DP E
Sbjct: 27 LFHDFLGSKNPTLASTSMADHRLPPDNKAAKAAMTPSTASASSAGGLGGLSSTSDLVERHSGGGNHLDGIQLFGPRSDVSGSIMSNRFSGNKRSNSDSHF------TTQEHPETL---HWSKLLRNGPG-------------------------------------------SFSMNVNPLANQPPRGGGQISHLLHQLSTSRFKDENVGPSVIAQTAADEGSRTGMKGPGILSSFTM--------------------PNSSKLESFAPSNTGNRKDLASSTKQMTIFYGGQAHVFDDVHPNKADVIMALAGSSGGSWSTGLSHKPKSK----NNTSDGPYKLGQMYEGGSSKETPQMPPEFRARPSHQPTSSAC-----HRIFTQPGREHQGSIISRGRDIRDPVHRSDPEKE 359
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
500 1000 1500 2000 2500 3000 3500 4000 Expect = 2.7E-15 / Score = 66.8 Expect = 3.5E-15 / Score = 55.0 Score = 15.511 Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence SM00979 PF06200 PS51320 mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PTHR33077:SF8 PTHR33077
IPR Term IPR Description Source Source Term Source Description Alignment
IPR010399 Tify domain SMART SM00979 tify_2 coord: 290..325 IPR010399 Tify domain PFAM PF06200 tify coord: 292..324 IPR010399 Tify domain PROSITE PS51320 TIFY coord: 290..325 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 373..421 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 221..241 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 94..117 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 47..77 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..25 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 221..237 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 42..117 None No IPR available PANTHER PTHR33077:SF8 PROTEIN TIFY 8 coord: 63..420 IPR040390 TIFY/JAZ family PANTHER PTHR33077 FAMILY NOT NAMED coord: 63..420
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=mRNA; length=4236bp back to top protein sequence of Ca_15021.1_ICC4958_v2
>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=421bp back to top mRNA from alignment at Ca_LG_5:43991462..43995697+
Legend: five_prime_UTR exon CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=mRNA; length=4236bp; location=Sequence derived from: Ca_LG_5:43991462..43995697+ (Cicer arietinumACAGAGTCTCTAAGATTATTAAACAACAGAGACATACATACGCCCATTAA
TATCAACACAAAACACAACAACAACATTTTCTGTAACAAATTAGAAAGAA
AAAAAATAACCTTTTTCTTTTTCTCTCTCTTCATCCCAGCTATGCAGCAG
AGTGAAATGGGTTTACC ATGGCGTTACTAAGAATGGTTCAATCTCACTCT
CACTCTCAGCACAACAACAACAACAACGACAACGGTGGGACCCACCACTT
GCTCAATCCAGTACTCCATGATTTTCTCGGCATGAAACCATCTGATACTT
CCGCCGATGTTAGGTTACCGGAGACATCAGTCTCAGCTTCCTCCGCCGGT
GCACGTGGCCCTTTTTCCACCACCTCTGAAACTGTTTCTG AAAAGCAGGTAGGGAATC
ATCTTGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTACTGGCACT
GAGATAAGTAACAGACTAGTGGGGAACAAGAGAAGTAATTCTGATTCTTC
TTTTATGGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGACTCCTTTC
AAAACTCACATTTGATGAAG GTCCTCCGAAATGCGTTTGGCGGAGAG
AGGTCTAGAAGGCCTAATGACGATGAAGTGTTACATGCTATGCAGTCAAT
GAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCATCCACCACTAAGC
TTGATGCAAACAAATGGGAACGGTCTATTCTCACGAACATTGGCCCTTCT
ATGCAGCATCCTCCGCGTGGAGGGCAGTTGATGACTCCTCTTGCACACCA
ATTAGCTTCAAATAAGATTAGGGATACCAATGCCGGTCCTTCATTTATCT
CTCAGTCTGCTGCTGATGAAGGATCAAGAACCGGAATCAAAGGCCCCGGA
GTTTTAAGTTCCATAAACACATCTGCTACTGCTACTGATAAAATTTCATC
TGCAGTGCTACTCGGCGGAAGCAGGCCAAAACCTCTAACGAATATAGTAG
AATCATTCACACCCCCAAG TCAACACGGGCTAA
CATCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCGCATGTT
TTTGATGATGTCCACCCACATAAG GCAGATGTTATAATGG
CTCTGGCTGGTTCAAATGGTGGATCTTGGTCCACGGCATTCTCGCCGAAA
ACTACTGCAAAACTAACTAATGAAAGTAACTTGCATAGTGGAGAAAATGA
AACAGGATTAGTGAGTAATGTGGCATTCACACAAGAGCATCATGGGAAGT
TGTCTGTTACCGGCAGTTCTAGTCGTGCTGTTGGGGGGCTTGGTGATCGG
GTATCTACTCCAGCTG GGGTACAC
CAAGGAAGCATTTTTGCTAAAGATACAAGAAATCCGGTTCAAGCAGCTGA
TCCCAGTTCCGAAGACAAAAGAGCATTGTGA ATAGAGTTTGAGGCTGAAA
TGCTTATGTCAAATTTTCTCATGATCTTTCAAGTAC back to top Coding sequence (CDS) from alignment at Ca_LG_5:43991462..43995697+
>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=CDS; length=1266bp; location=Sequence derived from: Ca_LG_5:43991462..43995697+ (Cicer arietinum back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
