Ca_15030.1, Ca_15030.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview


Name	Ca_15030.1
Unique Name	Ca_15030.1_ICC4958_v2
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	1161

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca_LG_5	supercontig	Ca_LG_5:44065583..44066743 -	Cicer arietinum ICC 4958 genome v2	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum ICC 4958 genome v2	2015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)	2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot	2019-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caipsR473	Pisum sativum Cameor genome v1a	Pisum sativum
caipsR488	Pisum sativum Cameor genome v1a	Pisum sativum
caipsR508	Pisum sativum Cameor genome v1a	Pisum sativum
caipsR545	Pisum sativum Cameor genome v1a	Pisum sativum
caipvR0543	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caipvR0660	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caivuR0599	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caivuR0614	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caiccR0531	Cajanus cajan Asha genome v1.0	Cajanus cajan
caiccR0615	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaiL0373	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiL0440	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiL0894	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiL655	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
caizwsR510	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
caizwsR609	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
caitifR553	Vicia faba cv. Tiffany genome v1.0	Vicia faba
caivfhR554	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
caitifR597	Vicia faba cv. Tiffany genome v1.0	Vicia faba
caivfhR595	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
caivrvR500	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
caivrvR546	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
caivssR0629	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
caivssR0690	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
caivuaR548	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
caivuaR609	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
caicanR0521	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
caicanR0563	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Psat5g028640.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vfaba.Hedin2.R1.2g186720.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-KK1_009385	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vfaba.Tiffany.R1.2g150640.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Psat5g027280.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-XM_014643842.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun09g206400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-KK1_042306	Cajanus cajan Asha genome v1.0	Cajanus cajan
jg55448.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
LR48_mrnaVigan04g215200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
evm.model.Chr09.1642	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Psat05G0098800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Phvul.009G096000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Ca_15030	Ca_15030_ICC4958_v2	Cicer arietinum	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15030.1.utr3p1	Ca_15030.1.utr3p1_ICC4958_v2	Cicer arietinum	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15030.1.cds3	Ca_15030.1.cds3_ICC4958_v2	Cicer arietinum	CDS
Ca_15030.1.cds2	Ca_15030.1.cds2_ICC4958_v2	Cicer arietinum	CDS
Ca_15030.1.cds1	Ca_15030.1.cds1_ICC4958_v2	Cicer arietinum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15030.1.exon3	Ca_15030.1.exon3_ICC4958_v2	Cicer arietinum	exon
Ca_15030.1.exon2	Ca_15030.1.exon2_ICC4958_v2	Cicer arietinum	exon
Ca_15030.1.exon1	Ca_15030.1.exon1_ICC4958_v2	Cicer arietinum	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15030.1.utr5p1	Ca_15030.1.utr5p1_ICC4958_v2	Cicer arietinum	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15030.1_ICC4958_v2	Ca_15030.1_ICC4958_v2	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC2_ARATH (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.502e-8
Identity = 37/115 (32.17%), Postives = 54/115 (46.96%), Query Frame = 1

Query:   91 GTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAV--PRTCIPAQTIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQV 429
            G A +YD P+  +AC+G          +       +W NG ACGR Y VRCI A     R C   +T+ +K+VD  +         +  L LS  AF++IAN  A  I + +  +
Sbjct:   28 GKAVYYDPPYTRSACYGTQ-----RETLVVGVKNNLWQNGRACGRRYRVRCIGATYNFDRAC-TGRTVDVKVVDFCR------EPCNGDLNLSRDAFRVIANTDAGNIRVVYTPI 130

[Close]

BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC_CITJA (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.032e-8
Identity = 40/117 (34.19%), Postives = 56/117 (47.86%), Query Frame = 1

Query:   82 ADLGTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPAQ--TIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQ 426
            A  GTA+ Y  P++P+AC G          M  +A   IW+NGA C + + V+C  A    T  P +  ++ +KIVD         +    ++ LS  AF  IAN  A  I IEF Q
Sbjct:   24 ASEGTATFYTPPYVPSACNGYKNDGV----MIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCP------AGCQATIDLSQEAFSQIANPDAGKIKIEFNQ 130

The following BLAST results are available for this feature:

BLAST of Ca_15030.1 vs. DB:Swiss

BLAST of Ca_15030.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
EGC2_ARATH	1.502e-8	32.17	EG45-like domain containing protein 2 OS=Arabidops...	[more]
EGC_CITJA	2.032e-8	34.19	EG45-like domain containing protein OS=Citrus jamb...	[more]

InterPro

Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 66..139 e-value: 4.7E-9 score: 36.4
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 25..143 e-value: 6.3E-19 score: 70.3
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 16..143
None	No IPR available	PANTHER	PTHR47480	FAMILY NOT NAMED	coord: 9..143
None	No IPR available	PANTHER	PTHR47480:SF1		coord: 9..143
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 42..143 score: 11.815

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca_LG_5:44065583..44066743-
coding sequence from alignment at Ca_LG_5:44065583..44066743-

mRNA sequence

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bp
AACGAATAACACTATGGTAATAAATAAACTAATTTATTCAATTCGTTAAT
TTGAACAATTTTTGCAGCAATGTCCTCCAATTCTCAATATCTTTCCTTCC
AACAAAGCCTAATCATCATCATCATCCTCTTCCTCATCCACTACTCTCAA
GCTGACCTTGGCACTGCTTCCCATTATGATCGTCCCTTTTTACGTAAGTC
GATCCCAAATACAATTGATTATAAAATTAGATGGATCTATTTATTTATTT
ATTTATTTAAATTGAATAGTATTTATAGTTGTTAATGAATGAATGGTAAG
TGAGAAAGTGAAATGAAATGTGATAAAACAGCAACAGCATGTTTTGGGGA
AGATGCATCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAG
GAATATGGGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGT
ATAAGTGCAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGAT
TAAGATTGTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTG
ATACTTCTCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTT
TCTGCATCATTGATTAACATTGAATTCCAACAGTAAGTTATCTTTTATTG
CTTTTCTTTTGGTCACCTATTAATATATCAAGGTGGTTAGTTAGTTGTTG
AAAAATCAAATGTTGAATTAAAGAACTTTCTCAACTACTTTTATACTTTC
TTTAAAATACTACTCATAATTTTTTATATTTTTAATGAACTAATTTAGTA
TTCACTGAATAATTTAAATTAATAAGTTTTTTTTATTTATTTATTGAGAT
TACACAAATCAAATGTGTTCAACTATGTTTATAATAAGTAATATACTTTT
TAAGATAAAATTGATCTATTTTCATGCCTATACATAATTAAATCAATCTA
TTTTCATGTTCAGGGTTTGAAAATTGGAAATGGGCTTAGATATGGCACTA
TATAAAGGGAGGATAGGAAATGCCCGGAAATTTTGTTGCTGTGAAGATTG
CTGCAGAAGAATTTGCATGAGTATTTTAATTTCTAATTGTCAATATAGAT
TAATATTTGTATACATTTTGTTCCTAAGAGGATATCTTCTCTTCTGCCGA
TTAGCTATTAT

protein sequence of Ca_15030.1_ICC4958_v2

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=143bp
MSSNSQYLSFQQSLIIIIILFLIHYSQADLGTASHYDRPFLPTACFGEDA
SEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPAQTIQIKI
VDRAQSSVSRPSSTDTSLVLSTTAFQIIANLSASLINIEFQQV

mRNA from alignment at Ca_LG_5:44065583..44066743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinum
AACGAATAACACTATGGTAATAAATAAACTAATTTATTCAATTCGTTAAT
TTGAACAATTTTTGCAGCAATGTCCTCCAATTCTCAATATCTTTCCTTCC
AACAAAGCCTAATCATCATCATCATCCTCTTCCTCATCCACTACTCTCAA
GCTGACCTTGGCACTGCTTCCCATTATGATCGTCCCTTTTTACGTAAGTC
GATCCCAAATACAATTGATTATAAAATTAGATGGATCTATTTATTTATTT
ATTTATTTAAATTGAATAGTATTTATAGTTGTTAATGAATGAATGGTAAG
TGAGAAAGTGAAATGAAATGTGATAAAACAGCAACAGCATGTTTTGGGGA
AGATGCATCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAG
GAATATGGGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGT
ATAAGTGCAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGAT
TAAGATTGTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTG
ATACTTCTCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTT
TCTGCATCATTGATTAACATTGAATTCCAACAGTAAGTTATCTTTTATTG
CTTTTCTTTTGGTCACCTATTAATATATCAAGGTGGTTAGTTAGTTGTTG
AAAAATCAAATGTTGAATTAAAGAACTTTCTCAACTACTTTTATACTTTC
TTTAAAATACTACTCATAATTTTTTATATTTTTAATGAACTAATTTAGTA
TTCACTGAATAATTTAAATTAATAAGTTTTTTTTATTTATTTATTGAGAT
TACACAAATCAAATGTGTTCAACTATGTTTATAATAAGTAATATACTTTT
TAAGATAAAATTGATCTATTTTCATGCCTATACATAATTAAATCAATCTA
TTTTCATGTTCAGGGTTTGAAAATTGGAAATGGGCTTAGATATGGCACTA
TATAAAGGGAGGATAGGAAATGCCCGGAAATTTTGTTGCTGTGAAGATTG
CTGCAGAAGAATTTGCATGAGTATTTTAATTTCTAATTGTCAATATAGAT
TAATATTTGTATACATTTTGTTCCTAAGAGGATATCTTCTCTTCTGCCGA
TTAGCTATTAT

Coding sequence (CDS) from alignment at Ca_LG_5:44065583..44066743-

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=CDS; length=432bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinum
ATGTCCTCCAATTCTCAATATCTTTCCTTCCAACAAAGCCTAATCATCAT
CATCATCCTCTTCCTCATCCACTACTCTCAAGCTGACCTTGGCACTGCTT
CCCATTATGATCGTCCCTTTTTACCAACAGCATGTTTTGGGGAAGATGCA
TCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAGGAATATG
GGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGTATAAGTG
CAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGATTAAGATT
GTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTGATACTTC
TCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTTTCTGCAT
CATTGATTAACATTGAATTCCAACAGGTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009009	RlpA-like_DPBB
IPR036908	RlpA-like_sf
IPR007112	Expansin/allergen_DPBB_dom

Search form

Ca_15030.1, Ca_15030.1_ICC4958_v2 (mRNA) Cicer arietinum