Ca_15030.1, Ca_15030.1_ICC4958_v2 (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC2_ARATH (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 1.502e-8 Identity = 37/115 (32.17%), Postives = 54/115 (46.96%), Query Frame = 1 Query: 91 GTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAV--PRTCIPAQTIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQV 429 G A +YD P+ +AC+G + +W NG ACGR Y VRCI A R C +T+ +K+VD + + L LS AF++IAN A I + + + Sbjct: 28 GKAVYYDPPYTRSACYGTQ-----RETLVVGVKNNLWQNGRACGRRYRVRCIGATYNFDRAC-TGRTVDVKVVDFCR------EPCNGDLNLSRDAFRVIANTDAGNIRVVYTPI 130
BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC_CITJA (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 2.032e-8 Identity = 40/117 (34.19%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 82 ADLGTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPAQ--TIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQ 426 A GTA+ Y P++P+AC G M +A IW+NGA C + + V+C A T P + ++ +KIVD + ++ LS AF IAN A I IEF Q Sbjct: 24 ASEGTATFYTPPYVPSACNGYKNDGV----MIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCP------AGCQATIDLSQEAFSQIANPDAGKIKIEFNQ 130 The following BLAST results are available for this feature:
BLAST of Ca_15030.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bpback to top protein sequence of Ca_15030.1_ICC4958_v2 >Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=143bpback to top mRNA from alignment at Ca_LG_5:44065583..44066743- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_5:44065583..44066743- >Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=CDS; length=432bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinumback to top |