Cr_19496.1, Cr_19496.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_19496.1
Unique NameCr_19496.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length625
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_7supercontigCr_LG_7:26260603..26261227 -Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR693Pisum sativum Cameor genome v1aPisum sativum
crpsR714Pisum sativum Cameor genome v1aPisum sativum
crvuR759Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR795Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR836Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR853Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR857Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR801Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR900Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR904Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crzwsR749Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR781Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR784Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR793Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR751Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR755Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR757Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR767Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR768Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR688Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR709Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR834Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR838Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR843Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR853Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR734Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR811Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR830Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR833Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.4g176240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.003G164800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr03.1862Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014651196.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg19473.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat04G0134000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.4g133760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun03g355700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_19496Cr_19496_PI489777_v1Cicer reticulatumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_19496.1_PI489777_v1Cr_19496.1_PI489777_v1Cicer reticulatumpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19496.1:cds3Cr_19496.1:cds3_PI489777_v1Cicer reticulatumCDS
Cr_19496.1:cds2Cr_19496.1:cds2_PI489777_v1Cicer reticulatumCDS
Cr_19496.1:cds1Cr_19496.1:cds1_PI489777_v1Cicer reticulatumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19496.1:exon3Cr_19496.1:exon3_PI489777_v1Cicer reticulatumexon
Cr_19496.1:exon2Cr_19496.1:exon2_PI489777_v1Cicer reticulatumexon
Cr_19496.1:exon1Cr_19496.1:exon1_PI489777_v1Cicer reticulatumexon


Homology
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BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.108e-13
Identity = 46/150 (30.67%), Postives = 59/150 (39.33%), Query Frame = 1 
Query:   79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            AKISDFGLA+LL     R +     T  Y+APEW K +  +S K D+YSF VIL                                                    ER V V LWC+Q+  S+RP +  +  M +G   IP PP P   +
Sbjct:  661 AKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809
[Close]
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.372e-13
Identity = 46/150 (30.67%), Postives = 58/150 (38.67%), Query Frame = 1 
Query:   79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            AKISDFGLA+LL     R       T  Y+APEW K +  +S K D+YSF VIL                                                    ER V V LWC+Q+  S+RP +  +  M +G   IP PP P   +
Sbjct:  661 AKISDFGLAKLLLTNQTRTKTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYDIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809
[Close]
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12
Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1 
Query:   58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            LL     AKISDFGLA+LL+    +       T  Y+APEW K +  ++ K D+YSF VIL                                                    ER V V LWC+Q+  ++RP+I  +  M +G   IP PP  + +V
Sbjct:  645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800
[Close]
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12
Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1 
Query:   58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            LL     AKISDFGLA+LL+    +       T  Y+APEW K +  ++ K D+YSF VIL                                                    ER V V LWC+Q+  ++RP+I  +  M +G   IP PP  + +V
Sbjct:  645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800
The following BLAST results are available for this feature:
BLAST of Cr_19496.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
LERK1_ORYSJ3.108e-1330.67G-type lectin S-receptor-like serine/threonine-pro... [more]
LERK1_ORYSI6.372e-1330.67G-type lectin S-receptor-like serine/threonine-pro... [more]
LERK4_ORYSJ1.370e-1229.30G-type lectin S-receptor-like serine/threonine-pro... [more]
LERK4_ORYSI1.370e-1229.30G-type lectin S-receptor-like serine/threonine-pro... [more]
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.510.10coord: 19..111
e-value: 7.1E-11
score: 43.4
NoneNo IPR availablePANTHERPTHR27009:SF63coord: 26..117
NoneNo IPR availablePANTHERPTHR27009FAMILY NOT NAMEDcoord: 26..117
IPR000719Protein kinase domainPFAMPF00069Pkinasecoord: 22..87
e-value: 5.1E-9
score: 35.9
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 1..121
score: 10.874
IPR011009Protein kinase-like domain superfamilySUPERFAMILY56112Protein kinase-like (PK-like)coord: 20..113

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bp
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGGTAATGAGTCTACTACTTCCTAATTAACTAAGGTAATGAGTCTAATGA
CATATTCACATGGAAATTGGGGCATATTTCACTCATGGCCATCAAGTTCT
GGTCATTTTGCTTTTGGTTTTTACCCACAAGGAAGTGGCTTTGCTGTCGG
GATATGGCTTTGCTAAAATATCCGATTTTGGATTGGCAAGGTTATTGAAG
AGGGGCAATGTAAGGGAGGATGACACGAGCAGGTACTTGGCACCTGAATG
GCAGAAAGAGGATGCATCAGTATCAGTAAAAGCTGACATTTACAGTTTTG
AGGTGGTATTATTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATGTGGACTGGAAGATATTGGAAAGAATGGTGA
AGGTGGGGTTGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATA
AAGAATATAATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCC
TTCTCCAGCTCGCTTAGTTGAATAG
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protein sequence of Cr_19496.1_PI489777_v1

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=121bp
MKEAGNDPGRSNTTHHFVALLSGYGFAKISDFGLARLLKRGNVREDDTSR
YLAPEWQKEDASVSVKADIYSFEVILERMVKVGLWCVQDHQSLRPAIKNI
IIMFEGLKDIPLPPSPARLVE
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mRNA from alignment at Cr_LG_7:26260603..26261227-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatum
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGGTAATGAGTCTACTACTTCCTAATTAACTAAGGTAATGAGTCTAATGA
CATATTCACATGGAAATTGGGGCATATTTCACTCATGGCCATCAAGTTCT
GGTCATTTTGCTTTTGGTTTTTACCCACAAGGAAGTGGCTTTGCTGTCGG
GATATGGCTTTGCTAAAATATCCGATTTTGGATTGGCAAGGTTATTGAAG
AGGGGCAATGTAAGGGAGGATGACACGAGCAGGTACTTGGCACCTGAATG
GCAGAAAGAGGATGCATCAGTATCAGTAAAAGCTGACATTTACAGTTTTG
AGGTGGTATTATTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATGTGGACTGGAAGATATTGGAAAGAATGGTGA
AGGTGGGGTTGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATA
AAGAATATAATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCC
TTCTCCAGCTCGCTTAGTTGAATAG
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Coding sequence (CDS) from alignment at Cr_LG_7:26260603..26261227-

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=CDS; length=366bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatum
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGTGGCTTTGCTGTCGGGATATGGCTTTGCTAAAATATCCGATTTTGGAT
TGGCAAGGTTATTGAAGAGGGGCAATGTAAGGGAGGATGACACGAGCAGG
TACTTGGCACCTGAATGGCAGAAAGAGGATGCATCAGTATCAGTAAAAGC
TGACATTTACAGTTTTGAGGTGATATTGGAAAGAATGGTGAAGGTGGGGT
TGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATAAAGAATATA
ATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCCTTCTCCAGC
TCGCTTAGTTGAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding