Cr_19496.1, Cr_19496.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_19496.1
Unique Name	Cr_19496.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	625

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_7	supercontig	Cr_LG_7:26260603..26261227 -	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR693	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR714	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR759	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR795	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR836	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR853	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR857	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crpvR801	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR838	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR900	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR904	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crzwsR749	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR781	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR784	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR793	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR751	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR755	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR757	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR767	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR768	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR771	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR688	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR709	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR719	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR730	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR834	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR838	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR843	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR853	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR734	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR790	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR811	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR830	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR833	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis

Orthologs


Gene/Transcript	Assembly	Species
Vfaba.Hedin2.R1.4g176240.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Phvul.003G164800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
evm.model.Chr03.1862	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_014651196.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg19473.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat04G0134000-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vfaba.Tiffany.R1.4g133760.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigun03g355700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_19496	Cr_19496_PI489777_v1	Cicer reticulatum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19496.1_PI489777_v1	Cr_19496.1_PI489777_v1	Cicer reticulatum	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19496.1:cds3	Cr_19496.1:cds3_PI489777_v1	Cicer reticulatum	CDS
Cr_19496.1:cds2	Cr_19496.1:cds2_PI489777_v1	Cicer reticulatum	CDS
Cr_19496.1:cds1	Cr_19496.1:cds1_PI489777_v1	Cicer reticulatum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19496.1:exon3	Cr_19496.1:exon3_PI489777_v1	Cicer reticulatum	exon
Cr_19496.1:exon2	Cr_19496.1:exon2_PI489777_v1	Cicer reticulatum	exon
Cr_19496.1:exon1	Cr_19496.1:exon1_PI489777_v1	Cicer reticulatum	exon

Homology

[Close]

BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.108e-13
Identity = 46/150 (30.67%), Postives = 59/150 (39.33%), Query Frame = 1

Query:   79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            AKISDFGLA+LL     R +     T  Y+APEW K +  +S K D+YSF VIL                                                    ER V V LWC+Q+  S+RP +  +  M +G   IP PP P   +
Sbjct:  661 AKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809

[Close]

BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.372e-13
Identity = 46/150 (30.67%), Postives = 58/150 (38.67%), Query Frame = 1

Query:   79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            AKISDFGLA+LL     R       T  Y+APEW K +  +S K D+YSF VIL                                                    ER V V LWC+Q+  S+RP +  +  M +G   IP PP P   +
Sbjct:  661 AKISDFGLAKLLLTNQTRTKTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYDIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809

[Close]

BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12
Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1

Query:   58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            LL     AKISDFGLA+LL+    +       T  Y+APEW K +  ++ K D+YSF VIL                                                    ER V V LWC+Q+  ++RP+I  +  M +G   IP PP  + +V
Sbjct:  645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800

[Close]

BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12
Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1

Query:   58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
            LL     AKISDFGLA+LL+    +       T  Y+APEW K +  ++ K D+YSF VIL                                                    ER V V LWC+Q+  ++RP+I  +  M +G   IP PP  + +V
Sbjct:  645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800

The following BLAST results are available for this feature:

BLAST of Cr_19496.1 vs. DB:Swiss

BLAST of Cr_19496.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
LERK1_ORYSJ	3.108e-13	30.67	G-type lectin S-receptor-like serine/threonine-pro...	[more]
LERK1_ORYSI	6.372e-13	30.67	G-type lectin S-receptor-like serine/threonine-pro...	[more]
LERK4_ORYSJ	1.370e-12	29.30	G-type lectin S-receptor-like serine/threonine-pro...	[more]
LERK4_ORYSI	1.370e-12	29.30	G-type lectin S-receptor-like serine/threonine-pro...	[more]

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.510.10		coord: 19..111 e-value: 7.1E-11 score: 43.4
None	No IPR available	PANTHER	PTHR27009:SF63		coord: 26..117
None	No IPR available	PANTHER	PTHR27009	FAMILY NOT NAMED	coord: 26..117
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 22..87 e-value: 5.1E-9 score: 35.9
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 1..121 score: 10.874
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 20..113

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_7:26260603..26261227-
coding sequence from alignment at Cr_LG_7:26260603..26261227-

mRNA sequence

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bp
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGGTAATGAGTCTACTACTTCCTAATTAACTAAGGTAATGAGTCTAATGA
CATATTCACATGGAAATTGGGGCATATTTCACTCATGGCCATCAAGTTCT
GGTCATTTTGCTTTTGGTTTTTACCCACAAGGAAGTGGCTTTGCTGTCGG
GATATGGCTTTGCTAAAATATCCGATTTTGGATTGGCAAGGTTATTGAAG
AGGGGCAATGTAAGGGAGGATGACACGAGCAGGTACTTGGCACCTGAATG
GCAGAAAGAGGATGCATCAGTATCAGTAAAAGCTGACATTTACAGTTTTG
AGGTGGTATTATTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATGTGGACTGGAAGATATTGGAAAGAATGGTGA
AGGTGGGGTTGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATA
AAGAATATAATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCC
TTCTCCAGCTCGCTTAGTTGAATAG

protein sequence of Cr_19496.1_PI489777_v1

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=121bp
MKEAGNDPGRSNTTHHFVALLSGYGFAKISDFGLARLLKRGNVREDDTSR
YLAPEWQKEDASVSVKADIYSFEVILERMVKVGLWCVQDHQSLRPAIKNI
IIMFEGLKDIPLPPSPARLVE

mRNA from alignment at Cr_LG_7:26260603..26261227-

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatum
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGGTAATGAGTCTACTACTTCCTAATTAACTAAGGTAATGAGTCTAATGA
CATATTCACATGGAAATTGGGGCATATTTCACTCATGGCCATCAAGTTCT
GGTCATTTTGCTTTTGGTTTTTACCCACAAGGAAGTGGCTTTGCTGTCGG
GATATGGCTTTGCTAAAATATCCGATTTTGGATTGGCAAGGTTATTGAAG
AGGGGCAATGTAAGGGAGGATGACACGAGCAGGTACTTGGCACCTGAATG
GCAGAAAGAGGATGCATCAGTATCAGTAAAAGCTGACATTTACAGTTTTG
AGGTGGTATTATTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATGTGGACTGGAAGATATTGGAAAGAATGGTGA
AGGTGGGGTTGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATA
AAGAATATAATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCC
TTCTCCAGCTCGCTTAGTTGAATAG

Coding sequence (CDS) from alignment at Cr_LG_7:26260603..26261227-

>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=CDS; length=366bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatum
ATGAAGGAAGCAGGAAATGATCCTGGTCGCTCTAATACCACACATCACTT
TGTGGCTTTGCTGTCGGGATATGGCTTTGCTAAAATATCCGATTTTGGAT
TGGCAAGGTTATTGAAGAGGGGCAATGTAAGGGAGGATGACACGAGCAGG
TACTTGGCACCTGAATGGCAGAAAGAGGATGCATCAGTATCAGTAAAAGC
TGACATTTACAGTTTTGAGGTGATATTGGAAAGAATGGTGAAGGTGGGGT
TGTGGTGTGTGCAAGACCACCAATCCCTCCGTCCTGCAATAAAGAATATA
ATCATAATGTTCGAAGGTTTGAAAGATATTCCACTTCCTCCTTCTCCAGC
TCGCTTAGTTGAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR011009	Kinase-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Search form

Cr_19496.1, Cr_19496.1_PI489777_v1 (mRNA) Cicer reticulatum