Cr_19496.1, Cr_19496.1_PI489777_v1 (mRNA) Cicer reticulatum
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.108e-13 Identity = 46/150 (30.67%), Postives = 59/150 (39.33%), Query Frame = 1 Query: 79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
AKISDFGLA+LL R + T Y+APEW K + +S K D+YSF VIL ER V V LWC+Q+ S+RP + + M +G IP PP P +
Sbjct: 661 AKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK1_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 6.372e-13 Identity = 46/150 (30.67%), Postives = 58/150 (38.67%), Query Frame = 1 Query: 79 AKISDFGLARLLKRGNVREDD----TSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
AKISDFGLA+LL R T Y+APEW K + +S K D+YSF VIL ER V V LWC+Q+ S+RP + + M +G IP PP P +
Sbjct: 661 AKISDFGLAKLLLTNQTRTKTGIRGTRGYVAPEWFK-NIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYDIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFI 809
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK4 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12 Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1 Query: 58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
LL AKISDFGLA+LL+ + T Y+APEW K + ++ K D+YSF VIL ER V V LWC+Q+ ++RP+I + M +G IP PP + +V
Sbjct: 645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800
BLAST of Cr_19496.1 vs. DB:Swiss
Match: LERK4_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK4 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-12 Identity = 46/157 (29.30%), Postives = 63/157 (40.13%), Query Frame = 1 Query: 58 LLSGYGFAKISDFGLARLLKRGNVRE----DDTSRYLAPEWQKEDASVSVKADIYSFEVIL----------------------------------------------------ERMVKVGLWCVQDHQSLRPAIKNIIIMFEGLKDIPLPPSPARLV 360
LL AKISDFGLA+LL+ + T Y+APEW K + ++ K D+YSF VIL ER V V LWC+Q+ ++RP+I + M +G IP PP + +V
Sbjct: 645 LLDDNFIAKISDFGLAKLLRTNQTQTYTGIRGTRGYVAPEWFK-NVGITAKVDVYSFGVILLELICCRQNVEMEAAEEEQSILTYWANDCYRCGRVDLLVDGDDEAKLNIKKVERFVAVALWCLQEEPTMRPSILKVTQMLDGADAIPTPPDSSSVV 800 The following BLAST results are available for this feature:
BLAST of Cr_19496.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bpback to top protein sequence of Cr_19496.1_PI489777_v1 >Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=121bpback to top mRNA from alignment at Cr_LG_7:26260603..26261227- Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=mRNA; length=625bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatumback to top Coding sequence (CDS) from alignment at Cr_LG_7:26260603..26261227- >Cr_19496.1_PI489777_v1 ID=Cr_19496.1_PI489777_v1; Name=Cr_19496.1; organism=Cicer reticulatum; type=CDS; length=366bp; location=Sequence derived from: Cr_LG_7:26260603..26261227- (Cicer reticulatumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|