Vigun01g029800.1

Transcript Overview
NameVigun01g029800.1
Unique NameVigun01g029800.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2155
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:3676792..3679264 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR004Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL388Pisum sativum Cameor genome v1aPisum sativum
pvvuL133Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL755Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL468Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL578Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0807Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0253Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0593Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1027Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL090Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL571Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR026Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR040Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL219Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL225Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL193Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL470Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL445Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL322Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL612Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL617Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR001Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR007Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL145Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL534Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL042Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL497Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL340Cicer arietinum
carvuL536Cicer arietinum
ccavuL074Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL353Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR048Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR053Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR016Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR068Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL447Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL490Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL467Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL501Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL117Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL399Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR004Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr05.137Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.06G017700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.06G008500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan05g001600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat05G0610700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr01.248Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_10506.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.005G028700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_19248.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014646672.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058889680.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_034377Cajanus cajan Asha genome v1.0Cajanus cajan
Psat04G0487200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.2g010320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr11.97Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.07G143300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan08g004900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.2g013360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.07G234900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg21034.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_32371Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.011G207600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004510967.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_07G01805.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_01767Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_06G00113.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_18000Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va08G003760.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr11.1362Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
XM_058926618.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_24901.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va05G002110.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_21065Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g029800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun11g009200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun11g009200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g029800Vigun01g029800_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g029800.1Vigun01g029800.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g029800.1_Vu_IT97K-499-35_v1.1Vigun01g029800.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g029800.1.v1.1.five_prime_UTR.1Vigun01g029800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun01g029800.1.v1.1.five_prime_UTR.2Vigun01g029800.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g029800.1.v1.1.CDS.1Vigun01g029800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g029800.1.v1.1.three_prime_UTR.1Vigun01g029800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN=At5g39865 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.715e-41
Identity = 82/166 (49.40%), Postives = 109/166 (65.66%), Query Frame = 1 
Query:  301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKII--LEGFPRLKPGF--VCELCGDARFVPCENCSGSRKVF----DEDEG----SLKRCLECNENGLLRCPYCC 747
            +ER+V+Y TSLRG+R+T+EDC  +R+ILK   + +DERDVSM   +++EL++ L  +      ++LP+VF+  KY+GG E IK L E GEL K+I   E      PGF   CE CGD RFVPCE CSGS K++    +EDEG      +RC  CNENGL+RC  CC
Sbjct:  224 KERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCC 389
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana OX=3702 GN=At3g28850 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.009e-38
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 1 
Query:  301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKP-----GFVCELCGDARFVPCENCSGSRKVF--------------------DEDEGSLKRCLECNENGLLRCPYCC 747
            +ER+++Y TSLRG+R+T+E+   VR+ILK   + VDERDVSM   +++EL+  LGE+      ++LP+VF+  KY+GGAE I+ L E G+L K +L G  R++      G  CE CGD RFVPCE CSGS KV+                    +E E   + C +CNENGL+RCP CC
Sbjct:  250 KERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEK-LLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVCC 427
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster OX=7227 GN=CG12206 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.442e-26
Identity = 47/150 (31.33%), Postives = 91/150 (60.67%), Query Frame = 1 
Query:  307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
            ++V+Y TS+  +R T+  C  V+ IL+   +  +ERD+ M + Y++E++  + +  + +PQ+FV G+ +G A +++ L E+GEL + +L  +  +   + C+ CG  R +PC  C+GS+K    +  + +    +C+ C+E GL++CP C
Sbjct:  434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQ-LLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster OX=7227 GN=CG31559 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.019e-25
Identity = 48/150 (32.00%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:  307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
            ++V+Y TS+  +R T+  C  V+ IL+   V  +ERDV M + Y+ E+++ +    V +PQ++V G+++G AE ++ + E+GEL + +L+ +  +   + C+ CG  R +PC +C+GS+K    +  + +    +C+ C+E GL++C  C
Sbjct:  306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGEL-RQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens OX=9606 GN=GRXCR1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-24
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:  304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
            +R+V+Y T LR VR TFE C  VR I +  RV  +E++++++  Y +EL    R + E   SLP VF+ G Y+GGAE I  + E+GEL  I+ +   R++    C  CG   F+PC  C GS     R  F +   +LK C  CNENGL RC  C
Sbjct:  137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDILTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRCKNC 288
[Close]
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus OX=10090 GN=Grxcr1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.653e-24
Identity = 63/155 (40.65%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:  304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
            +R+V+Y T LR VR TFE C  VR I +  RV  +E++++++  Y +EL    R + E   SLP VF+ G Y+GGAE I  + E+GEL  ++ +   R++    C  CG   F+PC  C GS     R  F +   +LK C  CNENGL RC  C
Sbjct:  137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALK-CTACNENGLQRCKNC 288
The following BLAST results are available for this feature:
BLAST of Vigun01g029800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
Y5986_ARATH1.715e-4149.40Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH5.009e-3844.69Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
GRCR2_DROME2.442e-2631.33Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_DROME1.019e-2532.00Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_HUMAN2.328e-2441.29Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_MOUSE7.653e-2440.65Glutaredoxin domain-containing cysteine-rich prote... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 102..193
e-value: 1.1E-18
score: 68.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..93
NoneNo IPR availableCDDcd03031GRX_GRX_likecoord: 103..245
e-value: 7.09274E-72
score: 214.407
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 106..171
e-value: 5.1E-12
score: 45.8
IPR002109GlutaredoxinPROSITEPS51354GLUTAREDOXIN_2coord: 92..197
score: 16.559
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 100..190

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2155bp
TATACTATAAAAGTATTAAATGAAAATAAATATTTAATCTTTTGAATAGT
TTTTTTCAAACTCATTGATGAGTAATTATGAAATTAATCGTTTGATTGCC
ATAGAAAAGTTGTGAAAAATAATTATAATTTATTTACAATAAGGTTTAGC
CGTGTGAAGTGGGGCCTGACATTCGCAATCAACACACACATACGACAGAA
CATAGTTGGTATTATGTTGCCATGACACCAAAAAGAAGAAAATTATTCTT
CATATTTTGTAAAAAAGAAAAACTATGAAGAAAAAAGAGATTACGTAAAA
TAAGACAATTGATGCATCAAAAAATTTAACCATAAAGTAAATGCATAATT
TATTTCCTCTTTCGAATGAAGAAAAGATGAAACAGAACCTGCACCttgtt
ttcatttatattttttttaattaattaatctattattattattatttata
ttatttGAAGGGTTCTATCTATAAATTGTTGCTGTTGTGGATAATTAACT
CATTCAACCCTTACCTCACCTTTTTCTATCTCTCTCCAGCATTCTCCAAA
ACTAACACAAACAAAACCCAATTCTTGTTTCAACTCCAAACTGAAACACC
ACACAGACACAGATCCTCTGCTAAGaaaaccccaaaactcgaaacaaaca
caaaacttcaaacaacaaacacacaaagaaaaaaaaacataaTCGCCTTT
ACGAAAGTAACAGAACTCACCGACAGGACTTTGTCTTTCCGTCATTCAGT
GCCGCCGCGTCGGAGCATTCTcgccgccgccgccgccgGACGTGAATTAC
AGAGCTCGGAGATTGTCGAATTTGGCGAAGATGTCGCGGTTTCCGTTCTT
CAACCGGTCGAACACGATTCATTCGGAGCACTCGCAGAAACCTTACCTTC
CTCAGAGCCAGCAGAGTCTGGACCGGTCCGGTTCGCTGAACCGGTTCTAC
GGATCCTCTGAGCCGGCGAAAACCTCAATCCGCGGGAAAATGGTGAAGAA
GCTCTGCACCTTGTTCGAGTCCTCCTCGAAGAAGGCTCCAGAATCGGAGT
CCCAATCGGAATCAAAAGCGCGTTGGGACTCGTGCacgacgacaacgaca
acgacgacgccgTTTCGGTTGTCCGGGACGGAGGAGCGGATCGTGGTGTA
TTTAACGAGCCTGCGCGGGGTTCGGCGAACGTTCGAGGACTGCAACGCGG
TGCGCATGATCCTGAAGGGGTTTAGGGTTTGGGTGGACGAGAGGGACGTG
TCGATGGACATAGCGTACAGGGAGGAGCTGCAGCGCGCGCTGGGCGAGCG
CCATGTGTCGCTGCCACAGGTTTTCGTGCGAGGAAAGTACGTGGGTGGCG
CTGAGGTGATCAAGCACTTGTTCGAGACTGGGGAACTGGCGAAGATCATT
CTGGAAGGGTTCCCCCGTCTGAAACCCGGCTTCGTGTGTGAGCTTTGTGG
GGATGCGAGGTTTGTGCCGTGCGAAAATTGCAGCGGGAGTCGGAAGGTGT
TTGATGAGGACGAAGGGAGCTTGAAGAGGTGTTTGGAGTGCAACGAGAAT
GGACTCCTCAGGTGCCCTTATTGCTGTTCTTGATCATGGCTTTTTCAATT
CCTCCTTGAACATGCTTTTGTTTTGTTCAAGATTTGGTCTTTTTCCTTCA
TTCAAAAATGGGAATGTGGATTGTGTATATTGGATGTCATTCCTTTGAAG
GCTGTAAATATTTAGCGGTGTATAAAGATTTCCTAAATATTGGTGGTTCT
AATGGAAGAAATCTTGGGATCTTTTAATATTATCCCTTCTTTTTTAGGCT
AATCTTGGATCAATCTTCTCTGTGCCCTCTTACACACACGTGTGTGTTTG
TGTTTATTGAACACTCTCACTGTTAAACATCGAATACTACTTGATTCGCC
CAACACATTCTTCAGACCTGGTAATTTTTTATATGAATAGCGATTACATT
TTTTTTGTCTCATTTGGTAAGAGGAAGAGTAATTAAACTCAGGGTATCAT
TATGGATGTTGGTTTGAAGGGTGTTTCATAGAATTTAATGAGATTGATTT
CCTGGTAAAGAAATTGTAGTACTGAGACAAGAAATAGTGTGGTTGTGACA
TCAGTTCATAAATGCTGTTGCAAGAAATGTGAGTTAATATTTAGGGTGTC
ATCTT
back to top

protein sequence of Vigun01g029800.1_Vu_IT97K-499-35_v1.1

>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=251bp
MSRFPFFNRSNTIHSEHSQKPYLPQSQQSLDRSGSLNRFYGSSEPAKTSI
RGKMVKKLCTLFESSSKKAPESESQSESKARWDSCTTTTTTTTPFRLSGT
EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREEL
QRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPG
FVCELCGDARFVPCENCSGSRKVFDEDEGSLKRCLECNENGLLRCPYCCS
*
back to top

mRNA from alignment at Vu01:3676792..3679264+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2473bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculata
TATACTATAAAAGTATTAAATGAAAATAAATATTTAATCTTTTGAATAGT
TTTTTTCAAACTCATTGATGAGTAATTATGAAATTAATCGTTTGATTGCC
ATAGAAAAGTTGTGAAAAATAATTATAATTTATTTACAATAAGGTTTAGC
CGTGTGAAGTGGGGCCTGACATTCGCAATCAACACACACATACGACAGAA
CATAGTTGGTATTATGTTGCCATGACACCAAAAAGAAGAAAATTATTCTT
CATATTTTGTAAAAAAGAAAAACTATGAAGAAAAAAGAGATTACGTAAAA
TAAGACAATTGATGCATCAAAAAATTTAACCATAAAGTAAATGCATAATT
TATTTCCTCTTTCGAATGAAGAAAAGATGAAACAGAACCTGCACCTTGTT
TTCATTTATATTTTTTTTAATTAATTAATCTATTATTATTATTATTTATA
TTATTTGAAGGGTTCTATCTATAAATTGTTGCTGTTGTGGATAATTAACT
CATTCAACCCTTACCTCACCTTTTTCTATCTCTCTCCAGCATTCTCCAAA
ACTAACACAAACAAAACCCAATTCTTGTTTCAACTCCAAACTGAAACACC
ACACAGACACAGATCCTCTGCTAAGAAAACCCCAAAACTCGAAACAAACA
CAAAACTTCAAACAACAAACACACAAAGAAAAAAAAACATAATCGCCTTT
ACGAAAGTAACAGAACTCACCGACAGGACTTTGTCTTTCCGTCATTCAGT
GCCGCCGCGTCGGAGCATTCTCGCCGCCGCCGCCGCCGGACGTGAATTAC
AGTAAACCCTGAATTTCATCGCTTTCTTTCTTTCGTTTTCTTTTAAACCA
TCATCCCTGAAATTCGAGCTCGGTTGTGATTTGTGATTGAATATGAAAAA
TTCTCACAAGAAACCCTGAAATGTTCTAATTCGTGTTAAAATGAAACCGC
GTTGAAATATCAGCTGCCGGAAACCTAATTTTGAGCAAATTTCGCTTCAG
GAAATGGAAATGATTTTGAATTGAATCGAATCGATTTTTAATCAGATGAT
ATCAATTATAGCCTTTCATAGTCAATTTCCGAAAACTCACGCTAAATTCT
TTCGATTCTTTGCCTTCAGGAGCTCGGAGATTGTCGAATTTGGCGAAGAT
GTCGCGGTTTCCGTTCTTCAACCGGTCGAACACGATTCATTCGGAGCACT
CGCAGAAACCTTACCTTCCTCAGAGCCAGCAGAGTCTGGACCGGTCCGGT
TCGCTGAACCGGTTCTACGGATCCTCTGAGCCGGCGAAAACCTCAATCCG
CGGGAAAATGGTGAAGAAGCTCTGCACCTTGTTCGAGTCCTCCTCGAAGA
AGGCTCCAGAATCGGAGTCCCAATCGGAATCAAAAGCGCGTTGGGACTCG
TGCACGACGACAACGACAACGACGACGCCGTTTCGGTTGTCCGGGACGGA
GGAGCGGATCGTGGTGTATTTAACGAGCCTGCGCGGGGTTCGGCGAACGT
TCGAGGACTGCAACGCGGTGCGCATGATCCTGAAGGGGTTTAGGGTTTGG
GTGGACGAGAGGGACGTGTCGATGGACATAGCGTACAGGGAGGAGCTGCA
GCGCGCGCTGGGCGAGCGCCATGTGTCGCTGCCACAGGTTTTCGTGCGAG
GAAAGTACGTGGGTGGCGCTGAGGTGATCAAGCACTTGTTCGAGACTGGG
GAACTGGCGAAGATCATTCTGGAAGGGTTCCCCCGTCTGAAACCCGGCTT
CGTGTGTGAGCTTTGTGGGGATGCGAGGTTTGTGCCGTGCGAAAATTGCA
GCGGGAGTCGGAAGGTGTTTGATGAGGACGAAGGGAGCTTGAAGAGGTGT
TTGGAGTGCAACGAGAATGGACTCCTCAGGTGCCCTTATTGCTGTTCTTG
ATCATGGCTTTTTCAATTCCTCCTTGAACATGCTTTTGTTTTGTTCAAGA
TTTGGTCTTTTTCCTTCATTCAAAAATGGGAATGTGGATTGTGTATATTG
GATGTCATTCCTTTGAAGGCTGTAAATATTTAGCGGTGTATAAAGATTTC
CTAAATATTGGTGGTTCTAATGGAAGAAATCTTGGGATCTTTTAATATTA
TCCCTTCTTTTTTAGGCTAATCTTGGATCAATCTTCTCTGTGCCCTCTTA
CACACACGTGTGTGTTTGTGTTTATTGAACACTCTCACTGTTAAACATCG
AATACTACTTGATTCGCCCAACACATTCTTCAGACCTGGTAATTTTTTAT
ATGAATAGCGATTACATTTTTTTTGTCTCATTTGGTAAGAGGAAGAGTAA
TTAAACTCAGGGTATCATTATGGATGTTGGTTTGAAGGGTGTTTCATAGA
ATTTAATGAGATTGATTTCCTGGTAAAGAAATTGTAGTACTGAGACAAGA
AATAGTGTGGTTGTGACATCAGTTCATAAATGCTGTTGCAAGAAATGTGA
GTTAATATTTAGGGTGTCATCTT
back to top

Coding sequence (CDS) from alignment at Vu01:3676792..3679264+

>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=CDS; length=753bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculata
ATGTCGCGGTTTCCGTTCTTCAACCGGTCGAACACGATTCATTCGGAGCA
CTCGCAGAAACCTTACCTTCCTCAGAGCCAGCAGAGTCTGGACCGGTCCG
GTTCGCTGAACCGGTTCTACGGATCCTCTGAGCCGGCGAAAACCTCAATC
CGCGGGAAAATGGTGAAGAAGCTCTGCACCTTGTTCGAGTCCTCCTCGAA
GAAGGCTCCAGAATCGGAGTCCCAATCGGAATCAAAAGCGCGTTGGGACT
CGTGCACGACGACAACGACAACGACGACGCCGTTTCGGTTGTCCGGGACG
GAGGAGCGGATCGTGGTGTATTTAACGAGCCTGCGCGGGGTTCGGCGAAC
GTTCGAGGACTGCAACGCGGTGCGCATGATCCTGAAGGGGTTTAGGGTTT
GGGTGGACGAGAGGGACGTGTCGATGGACATAGCGTACAGGGAGGAGCTG
CAGCGCGCGCTGGGCGAGCGCCATGTGTCGCTGCCACAGGTTTTCGTGCG
AGGAAAGTACGTGGGTGGCGCTGAGGTGATCAAGCACTTGTTCGAGACTG
GGGAACTGGCGAAGATCATTCTGGAAGGGTTCCCCCGTCTGAAACCCGGC
TTCGTGTGTGAGCTTTGTGGGGATGCGAGGTTTGTGCCGTGCGAAAATTG
CAGCGGGAGTCGGAAGGTGTTTGATGAGGACGAAGGGAGCTTGAAGAGGT
GTTTGGAGTGCAACGAGAATGGACTCCTCAGGTGCCCTTATTGCTGTTCT
TGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002109Glutaredoxin
IPR036249Thioredoxin-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein-disulfide reductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis