Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun01g029800.1 Vigun01g029800.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun01g029800.1_Vu_IT97K-499-35_v1.1 Vigun01g029800.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g029800.1.v1.1.five_prime_UTR.1 Vigun01g029800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR Vigun01g029800.1.v1.1.five_prime_UTR.2 Vigun01g029800.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g029800.1.v1.1.CDS.1 Vigun01g029800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g029800.1.v1.1.three_prime_UTR.1 Vigun01g029800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN=At5g39865 PE=2 SV=1)
HSP 1 Score: 149.443 bits (376), Expect = 1.715e-41
Identity = 82/166 (49.40%), Postives = 109/166 (65.66%), Query Frame = 1
Query: 301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKII--LEGFPRLKPGF--VCELCGDARFVPCENCSGSRKVF----DEDEG----SLKRCLECNENGLLRCPYCC 747
+ER+V+Y TSLRG+R+T+EDC +R+ILK + +DERDVSM +++EL++ L + ++LP+VF+ KY+GG E IK L E GEL K+I E PGF CE CGD RFVPCE CSGS K++ +EDEG +RC CNENGL+RC CC
Sbjct: 224 KERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCC 389
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana OX=3702 GN=At3g28850 PE=4 SV=1)
HSP 1 Score: 140.969 bits (354), Expect = 5.009e-38
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKP-----GFVCELCGDARFVPCENCSGSRKVF--------------------DEDEGSLKRCLECNENGLLRCPYCC 747
+ER+++Y TSLRG+R+T+E+ VR+ILK + VDERDVSM +++EL+ LGE+ ++LP+VF+ KY+GGAE I+ L E G+L K +L G R++ G CE CGD RFVPCE CSGS KV+ +E E + C +CNENGL+RCP CC
Sbjct: 250 KERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEK-LLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVCC 427
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster OX=7227 GN=CG12206 PE=2 SV=2)
HSP 1 Score: 110.538 bits (275), Expect = 2.442e-26
Identity = 47/150 (31.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
++V+Y TS+ +R T+ C V+ IL+ + +ERD+ M + Y++E++ + + + +PQ+FV G+ +G A +++ L E+GEL + +L + + + C+ CG R +PC C+GS+K + + + +C+ C+E GL++CP C
Sbjct: 434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQ-LLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster OX=7227 GN=CG31559 PE=2 SV=2)
HSP 1 Score: 107.842 bits (268), Expect = 1.019e-25
Identity = 48/150 (32.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query: 307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
++V+Y TS+ +R T+ C V+ IL+ V +ERDV M + Y+ E+++ + V +PQ++V G+++G AE ++ + E+GEL + +L+ + + + C+ CG R +PC +C+GS+K + + + +C+ C+E GL++C C
Sbjct: 306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGEL-RQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens OX=9606 GN=GRXCR1 PE=1 SV=1)
HSP 1 Score: 101.679 bits (252), Expect = 2.328e-24
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
+R+V+Y T LR VR TFE C VR I + RV +E++++++ Y +EL R + E SLP VF+ G Y+GGAE I + E+GEL I+ + R++ C CG F+PC C GS R F + +LK C CNENGL RC C
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDILTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRCKNC 288
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match:
GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus OX=10090 GN=Grxcr1 PE=1 SV=1)
HSP 1 Score: 100.138 bits (248), Expect = 7.653e-24
Identity = 63/155 (40.65%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
+R+V+Y T LR VR TFE C VR I + RV +E++++++ Y +EL R + E SLP VF+ G Y+GGAE I + E+GEL ++ + R++ C CG F+PC C GS R F + +LK C CNENGL RC C
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALK-CTACNENGLQRCKNC 288
The following BLAST results are available for this feature:
BLAST of Vigun01g029800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot )
Total hits: 6
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 1.71e-41 / Id = 49.40 Expect = 5.01e-38 / Id = 44.69 Expect = 2.44e-26 / Id = 31.33 Expect = 1.02e-25 / Id = 32.00 Expect = 2.33e-24 / Id = 41.29 Expect = 7.65e-24 / Id = 40.65 Sequence Y5986_ARATH Y3885_ARATH GRCR2_DROME GRCR1_DROME GRCR1_HUMAN GRCR1_MOUSE
Match Name E-value Identity Description
Y5986_ARATH 1.715e-41 49.40 Uncharacterized protein At5g39865 OS=Arabidopsis t... [more] Y3885_ARATH 5.009e-38 44.69 Uncharacterized protein At3g28850 OS=Arabidopsis t... [more] GRCR2_DROME 2.442e-26 31.33 Glutaredoxin domain-containing cysteine-rich prote... [more] GRCR1_DROME 1.019e-25 32.00 Glutaredoxin domain-containing cysteine-rich prote... [more] GRCR1_HUMAN 2.328e-24 41.29 Glutaredoxin domain-containing cysteine-rich prote... [more] GRCR1_MOUSE 7.653e-24 40.65 Glutaredoxin domain-containing cysteine-rich prote... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2155bp back to top protein sequence of Vigun01g029800.1_Vu_IT97K-499-35_v1.1
>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=251bp back to top mRNA from alignment at Vu01:3676792..3679264+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2473bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculataTATACTATAAAAGTATTAAATGAAAATAAATATTTAATCTTTTGAATAGT
TTTTTTCAAACTCATTGATGAGTAATTATGAAATTAATCGTTTGATTGCC
ATAGAAAAGTTGTGAAAAATAATTATAATTTATTTACAATAAGGTTTAGC
CGTGTGAAGTGGGGCCTGACATTCGCAATCAACACACACATACGACAGAA
CATAGTTGGTATTATGTTGCCATGACACCAAAAAGAAGAAAATTATTCTT
CATATTTTGTAAAAAAGAAAAACTATGAAGAAAAAAGAGATTACGTAAAA
TAAGACAATTGATGCATCAAAAAATTTAACCATAAAGTAAATGCATAATT
TATTTCCTCTTTCGAATGAAGAAAAGATGAAACAGAACCTGCACCTTGTT
TTCATTTATATTTTTTTTAATTAATTAATCTATTATTATTATTATTTATA
TTATTTGAAGGGTTCTATCTATAAATTGTTGCTGTTGTGGATAATTAACT
CATTCAACCCTTACCTCACCTTTTTCTATCTCTCTCCAGCATTCTCCAAA
ACTAACACAAACAAAACCCAATTCTTGTTTCAACTCCAAACTGAAACACC
ACACAGACACAGATCCTCTGCTAAGAAAACCCCAAAACTCGAAACAAACA
CAAAACTTCAAACAACAAACACACAAAGAAAAAAAAACATAATCGCCTTT
ACGAAAGTAACAGAACTCACCGACAGGACTTTGTCTTTCCGTCATTCAGT
GCCGCCGCGTCGGAGCATTCTCGCCGCCGCCGCCGCCGGACGTGAATTAC
A GTAAACCCTGAATTTCATCGCTTTCTTTCTTTCGTTTTCTTTTAAACCA
TCATCCCTGAAATTCGAGCTCGGTTGTGATTTGTGATTGAATATGAAAAA
TTCTCACAAGAAACCCTGAAATGTTCTAATTCGTGTTAAAATGAAACCGC
GTTGAAATATCAGCTGCCGGAAACCTAATTTTGAGCAAATTTCGCTTCAG
GAAATGGAAATGATTTTGAATTGAATCGAATCGATTTTTAATCAGATGAT
ATCAATTATAGCCTTTCATAGTCAATTTCCGAAAACTCACGCTAAATTCT
TTCGATTCTTTGCCTTCAGGAGCTCGGAGATTGTCGAATTTGGCGAAG AT
GTCGCGGTTTCCGTTCTTCAACCGGTCGAACACGATTCATTCGGAGCACT
CGCAGAAACCTTACCTTCCTCAGAGCCAGCAGAGTCTGGACCGGTCCGGT
TCGCTGAACCGGTTCTACGGATCCTCTGAGCCGGCGAAAACCTCAATCCG
CGGGAAAATGGTGAAGAAGCTCTGCACCTTGTTCGAGTCCTCCTCGAAGA
AGGCTCCAGAATCGGAGTCCCAATCGGAATCAAAAGCGCGTTGGGACTCG
TGCACGACGACAACGACAACGACGACGCCGTTTCGGTTGTCCGGGACGGA
GGAGCGGATCGTGGTGTATTTAACGAGCCTGCGCGGGGTTCGGCGAACGT
TCGAGGACTGCAACGCGGTGCGCATGATCCTGAAGGGGTTTAGGGTTTGG
GTGGACGAGAGGGACGTGTCGATGGACATAGCGTACAGGGAGGAGCTGCA
GCGCGCGCTGGGCGAGCGCCATGTGTCGCTGCCACAGGTTTTCGTGCGAG
GAAAGTACGTGGGTGGCGCTGAGGTGATCAAGCACTTGTTCGAGACTGGG
GAACTGGCGAAGATCATTCTGGAAGGGTTCCCCCGTCTGAAACCCGGCTT
CGTGTGTGAGCTTTGTGGGGATGCGAGGTTTGTGCCGTGCGAAAATTGCA
GCGGGAGTCGGAAGGTGTTTGATGAGGACGAAGGGAGCTTGAAGAGGTGT
TTGGAGTGCAACGAGAATGGACTCCTCAGGTGCCCTTATTGCTGTTCTTG
A TCATGGCTTTTTCAATTCCTCCTTGAACATGCTTTTGTTTTGTTCAAGA
TTTGGTCTTTTTCCTTCATTCAAAAATGGGAATGTGGATTGTGTATATTG
GATGTCATTCCTTTGAAGGCTGTAAATATTTAGCGGTGTATAAAGATTTC
CTAAATATTGGTGGTTCTAATGGAAGAAATCTTGGGATCTTTTAATATTA
TCCCTTCTTTTTTAGGCTAATCTTGGATCAATCTTCTCTGTGCCCTCTTA
CACACACGTGTGTGTTTGTGTTTATTGAACACTCTCACTGTTAAACATCG
AATACTACTTGATTCGCCCAACACATTCTTCAGACCTGGTAATTTTTTAT
ATGAATAGCGATTACATTTTTTTTGTCTCATTTGGTAAGAGGAAGAGTAA
TTAAACTCAGGGTATCATTATGGATGTTGGTTTGAAGGGTGTTTCATAGA
ATTTAATGAGATTGATTTCCTGGTAAAGAAATTGTAGTACTGAGACAAGA
AATAGTGTGGTTGTGACATCAGTTCATAAATGCTGTTGCAAGAAATGTGA
GTTAATATTTAGGGTGTCATCTT back to top Coding sequence (CDS) from alignment at Vu01:3676792..3679264+
>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=CDS; length=753bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculata back to top
