Vigun01g029800.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN=At5g39865 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.715e-41 Identity = 82/166 (49.40%), Postives = 109/166 (65.66%), Query Frame = 1 Query: 301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKII--LEGFPRLKPGF--VCELCGDARFVPCENCSGSRKVF----DEDEG----SLKRCLECNENGLLRCPYCC 747
+ER+V+Y TSLRG+R+T+EDC +R+ILK + +DERDVSM +++EL++ L + ++LP+VF+ KY+GG E IK L E GEL K+I E PGF CE CGD RFVPCE CSGS K++ +EDEG +RC CNENGL+RC CC
Sbjct: 224 KERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCC 389
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana OX=3702 GN=At3g28850 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.009e-38 Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 1 Query: 301 EERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERH-----VSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKP-----GFVCELCGDARFVPCENCSGSRKVF--------------------DEDEGSLKRCLECNENGLLRCPYCC 747
+ER+++Y TSLRG+R+T+E+ VR+ILK + VDERDVSM +++EL+ LGE+ ++LP+VF+ KY+GGAE I+ L E G+L K +L G R++ G CE CGD RFVPCE CSGS KV+ +E E + C +CNENGL+RCP CC
Sbjct: 250 KERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEK-LLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVCC 427
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster OX=7227 GN=CG12206 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 2.442e-26 Identity = 47/150 (31.33%), Postives = 91/150 (60.67%), Query Frame = 1 Query: 307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
++V+Y TS+ +R T+ C V+ IL+ + +ERD+ M + Y++E++ + + + +PQ+FV G+ +G A +++ L E+GEL + +L + + + C+ CG R +PC C+GS+K + + + +C+ C+E GL++CP C
Sbjct: 434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQ-LLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster OX=7227 GN=CG31559 PE=2 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 1.019e-25 Identity = 48/150 (32.00%), Postives = 92/150 (61.33%), Query Frame = 1 Query: 307 RIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQRALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGSRKVFDEDEGSLK----RCLECNENGLLRCPYC 744
++V+Y TS+ +R T+ C V+ IL+ V +ERDV M + Y+ E+++ + V +PQ++V G+++G AE ++ + E+GEL + +L+ + + + C+ CG R +PC +C+GS+K + + + +C+ C+E GL++C C
Sbjct: 306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGEL-RQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens OX=9606 GN=GRXCR1 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.328e-24 Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
+R+V+Y T LR VR TFE C VR I + RV +E++++++ Y +EL R + E SLP VF+ G Y+GGAE I + E+GEL I+ + R++ C CG F+PC C GS R F + +LK C CNENGL RC C
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDILTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRCKNC 288
BLAST of Vigun01g029800.1 vs. DB:Swiss
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus OX=10090 GN=Grxcr1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.653e-24 Identity = 63/155 (40.65%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 304 ERIVVYLTSLRGVRRTFEDCNAVRMILKGFRVWVDERDVSMDIAYREELQ---RALGERHVSLPQVFVRGKYVGGAEVIKHLFETGELAKIILEGFPRLKPGFVCELCGDARFVPCENCSGS-----RKVFDEDEGSLKRCLECNENGLLRCPYC 744
+R+V+Y T LR VR TFE C VR I + RV +E++++++ Y +EL R + E SLP VF+ G Y+GGAE I + E+GEL ++ + R++ C CG F+PC C GS R F + +LK C CNENGL RC C
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE-APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTK-IERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALK-CTACNENGLQRCKNC 288 The following BLAST results are available for this feature:
BLAST of Vigun01g029800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 6 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2155bpback to top protein sequence of Vigun01g029800.1_Vu_IT97K-499-35_v1.1 >Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=251bpback to top mRNA from alignment at Vu01:3676792..3679264+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=mRNA; length=2473bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:3676792..3679264+ >Vigun01g029800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g029800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g029800.1; organism=Vigna unguiculata; type=CDS; length=753bp; location=Sequence derived from: Vu01:3676792..3679264+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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