Transcript Overview
| Name | rna-TanjilR_01589 |
|---|
| Unique Name | rna-TanjilR_01589_La_Tanjil_v1.0 |
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| Type | mRNA |
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| Organism | Lupinus angustifolius (blue lupin) |
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| Sequence length | 1011 |
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| Product | hypothetical protein |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01589 | rna-TanjilR_01589_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_01589_La_Tanjil_v1.0 | rna-TanjilR_01589_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175 | rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175 | Lupinus angustifolius | CDS |
| rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394 | rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175 | rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175 | Lupinus angustifolius | exon |
| rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394 | rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG1_ARATH (BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana OX=3702 GN=BAG1 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 6.742e-8 Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 Query: 781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSM 960
GELK +L+ T + ++Q+L++K KERD FL + GV+DK K++L+EDP +EK+ L M
Sbjct: 89 GELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEM 148
BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG2_ARATH (BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana OX=3702 GN=BAG2 PE=1 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 3.722e-7 Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLL 954
GELK ILS T + ++ ++++K KERD FL + GV+D+ K++L+EDP +EK+LL
Sbjct: 61 GELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLL 118
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000626 | Ubiquitin domain | SMART | SM00213 | ubq_7 | coord: 57..127
e-value: 0.0064
score: 25.7 |
| IPR000626 | Ubiquitin domain | PFAM | PF00240 | ubiquitin | coord: 59..124
e-value: 7.3E-9
score: 35.3 |
| IPR000626 | Ubiquitin domain | PROSITE | PS50053 | UBIQUITIN_2 | coord: 57..125
score: 13.576 |
| None | No IPR available | GENE3D | 3.10.20.90 | | coord: 55..126
e-value: 1.6E-20
score: 74.8 |
| None | No IPR available | CDD | cd17054 | Ubl_AtBAG1_like | coord: 56..125
e-value: 2.23426E-24
score: 87.8613 |
| IPR029071 | Ubiquitin-like domain superfamily | SUPERFAMILY | 54236 | Ubiquitin-like | coord: 44..127 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA back to topprotein sequence of rna-TanjilR_01589_La_Tanjil_v1.0 >rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp
MLKLKSKRFFRSSSKHGNGNKATPTIDNDCSEIKWELRPGGMLVQKRESI
SSGEGMIAIRVSTMSQLHEISIEATSTFGELKMILSLITRLEPREQRLLF
KGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSMLRDQPINNLCCT
TIIV back to topmRNA from alignment at Chr_LG20-CM007380.1:20650165..20651175- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA back to topCoding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20650165..20651175- >rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGAGAATTGAAAATGA
TACTATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTC
AAAGGTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAG
AGACAAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGA
AGCTTCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACC
ACCATCATTGTATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000626 | Ubiquitin-like_dom |
| IPR029071 | Ubiquitin-like_domsf |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
|
