rna-TanjilR_01589

Transcript Overview
Namerna-TanjilR_01589
Unique Namerna-TanjilR_01589_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1011
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:20650165..20651175 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL086Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR500Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0776Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0784Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0667Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0833Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0861Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0554Pisum sativum Cameor genome v1aPisum sativum
anpvR0776Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0651Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0664Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0746Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0799Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0637Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0658Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0656Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0623Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0653Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0632Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0732Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0614Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0698Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0749Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0757Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0651Cicer arietinum
anccaR0682Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0691Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0762Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0777Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0784Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0713Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0721Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0723Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0744Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0755Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0761Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0770Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0766Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0778Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0624Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0632Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0787Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0811Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g065400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun04g087400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.1g121720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat01G0212800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat1g082920.1Pisum sativum Cameor genome v1aPisum sativum
Vigst.11G044400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.11G087100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014652737.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_20782.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va10G050170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_15797.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_04721.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun01g065400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg45979.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.004G059000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr04.339Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Tiffany.R1.1g091280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan10g207300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_14691Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004489499.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_11G00600.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr04.773Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun04g087400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
XM_058922948.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_06029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01589gene-TanjilG_01589_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01589rna-TanjilR_01589_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01589_La_Tanjil_v1.0rna-TanjilR_01589_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175Lupinus angustifoliusCDS
rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175Lupinus angustifoliusexon
rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG1_ARATH (BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana OX=3702 GN=BAG1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.742e-8
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:  781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSM 960
            GELK +L+  T +  ++Q+L++K KERD   FL + GV+DK K++L+EDP  +EK+ L M
Sbjct:   89 GELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEM 148
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BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG2_ARATH (BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana OX=3702 GN=BAG2 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.722e-7
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLL 954
            GELK ILS  T +  ++ ++++K KERD   FL + GV+D+ K++L+EDP  +EK+LL
Sbjct:   61 GELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLL 118
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01589 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
BAG1_ARATH6.742e-846.67BAG family molecular chaperone regulator 1 OS=Arab... [more]
BAG2_ARATH3.722e-746.55BAG family molecular chaperone regulator 2 OS=Arab... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 57..127
e-value: 0.0064
score: 25.7
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 59..124
e-value: 7.3E-9
score: 35.3
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 57..125
score: 13.576
NoneNo IPR availableGENE3D3.10.20.90coord: 55..126
e-value: 1.6E-20
score: 74.8
NoneNo IPR availableCDDcd17054Ubl_AtBAG1_likecoord: 56..125
e-value: 2.23426E-24
score: 87.8613
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 44..127

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA
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protein sequence of rna-TanjilR_01589_La_Tanjil_v1.0

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp
MLKLKSKRFFRSSSKHGNGNKATPTIDNDCSEIKWELRPGGMLVQKRESI
SSGEGMIAIRVSTMSQLHEISIEATSTFGELKMILSLITRLEPREQRLLF
KGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSMLRDQPINNLCCT
TIIV
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mRNA from alignment at Chr_LG20-CM007380.1:20650165..20651175-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA
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Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20650165..20651175-

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGAGAATTGAAAATGA
TACTATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTC
AAAGGTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAG
AGACAAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGA
AGCTTCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACC
ACCATCATTGTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding