rna-TanjilR_01589

Transcript Overview


Name	rna-TanjilR_01589
Unique Name	rna-TanjilR_01589_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	1011
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG20-CM007380.1	supercontig	Chr_LG20-CM007380.1:20650165..20651175 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL086	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR489	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR500	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0776	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0784	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0667	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0833	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0861	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0554	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0776	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0651	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0664	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0746	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0799	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0637	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0658	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0656	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0623	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0653	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0632	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0732	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0614	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0698	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0749	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0757	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0651		Cicer arietinum
anccaR0682	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0691	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0762	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0777	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0784	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0713	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0721	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0723	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvstR0744	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0755	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0761	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0770	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0766	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0778	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvunR0624	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0632	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0787	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0811	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigun01g065400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigun04g087400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vfaba.Hedin2.R1.1g121720.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Psat01G0212800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Psat1g082920.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vigst.11G044400.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigan.11G087100.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
rna-XM_014652737.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Cc_v2.0_20782.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Va10G050170.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Cc_v2.0_15797.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Ca_04721.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vigun01g065400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
jg45979.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Phvul.004G059000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
PvulFLAVERTChr04.339	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vfaba.Tiffany.R1.1g091280.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
LR48_mrnaVigan10g207300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Ca_14691	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_004489499.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vum_11G00600.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
evm.model.Chr04.773	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vigun04g087400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
XM_058922948.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_06029	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_01589	gene-TanjilG_01589_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01589	rna-TanjilR_01589_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_01589_La_Tanjil_v1.0	rna-TanjilR_01589_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175	rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175	Lupinus angustifolius	CDS
rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394	rna-TanjilR_01589_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175	rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650941..20651175	Lupinus angustifolius	exon
rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394	rna-TanjilR_01589_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20650165..20650394	Lupinus angustifolius	exon

Homology

[Close]

BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG1_ARATH (BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana OX=3702 GN=BAG1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.742e-8
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query:  781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSM 960
            GELK +L+  T +  ++Q+L++K KERD   FL + GV+DK K++L+EDP  +EK+ L M
Sbjct:   89 GELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEM 148

[Close]

BLAST of rna-TanjilR_01589 vs. DB:Swiss
Match: BAG2_ARATH (BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana OX=3702 GN=BAG2 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.722e-7
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1

Query:  781 GELKMILSLITRLEPREQRLLFKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLL 954
            GELK ILS  T +  ++ ++++K KERD   FL + GV+D+ K++L+EDP  +EK+LL
Sbjct:   61 GELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLL 118

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_01589 vs. DB:Swiss

BLAST of rna-TanjilR_01589 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
BAG1_ARATH	6.742e-8	46.67	BAG family molecular chaperone regulator 1 OS=Arab...	[more]
BAG2_ARATH	3.722e-7	46.55	BAG family molecular chaperone regulator 2 OS=Arab...	[more]

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 57..127 e-value: 0.0064 score: 25.7
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 59..124 e-value: 7.3E-9 score: 35.3
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 57..125 score: 13.576
None	No IPR available	GENE3D	3.10.20.90		coord: 55..126 e-value: 1.6E-20 score: 74.8
None	No IPR available	CDD	cd17054	Ubl_AtBAG1_like	coord: 56..125 e-value: 2.23426E-24 score: 87.8613
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 44..127

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG20-CM007380.1:20650165..20651175-
coding sequence from alignment at Chr_LG20-CM007380.1:20650165..20651175-

mRNA sequence

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA

protein sequence of rna-TanjilR_01589_La_Tanjil_v1.0

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp
MLKLKSKRFFRSSSKHGNGNKATPTIDNDCSEIKWELRPGGMLVQKRESI
SSGEGMIAIRVSTMSQLHEISIEATSTFGELKMILSLITRLEPREQRLLF
KGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEKKLLSMLRDQPINNLCCT
TIIV

mRNA from alignment at Chr_LG20-CM007380.1:20650165..20651175-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=mRNA; length=1011bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGTAATTCTCAACCCA
TCTTATTATTTTTTTCGTCAGTATTTTAAATTGTGGTCGGAGTTCTGATT
GTATTAACTTTATTGTAATTGCCGATAATTATGAGAAAATATAAATTAAA
CAATATGATCATGATATGGTAGCAAAGTGTTTCAAAACCAAAATATTACG
AACAATTATGGAGTGTGTTAAATTTCCATCACAAAAACAATTGGTGGTGA
CGAAAGTAGCCCAAAAAGATGCATAAGTTATATCATAGAGAACAGAAGTC
TTGTATGGAACTTCTGATACCTGATGTCTTAAGATTCATTTCAAAACCAA
AACTAGAGTCCAACTTTTATCTGATTATGAGTCAGAAAGAATCGTTCATC
CTACTCGTTAATTTTGAGACAGATGAATTTATAACTATAATCAAAATAGC
TTTTGCTAATCCCAAAAAATTATTTTCTTATCCTACCCATGAATAAGTTA
TTTATGATCCAAAAGTTTGGTTGTTATGCATTATGGACATAATCCTCAAG
TGGGTATTTGACAAAATTTGAAACTTTGTAGGAGAATTGAAAATGATACT
ATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTCAAAG
GTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAGAGAC
AAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGAAGCT
TCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACCACCA
TCATTGTATGA

Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20650165..20651175-

>rna-TanjilR_01589_La_Tanjil_v1.0 ID=rna-TanjilR_01589_La_Tanjil_v1.0; Name=rna-TanjilR_01589; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG20-CM007380.1:20650165..20651175- (Lupinus angustifolius
ATGTTGAAGTTGAAGTCAAAGAGGTTCTTCAGAAGCAGCTCCAAGCATGG
AAATGGAAACAAAGCAACACCAACAATAGATAATGATTGTAGTGAAATCA
AATGGGAACTTAGGCCTGGTGGTATGCTAGTTCAGAAAAGGGAGAGTATT
AGTTCAGGAGAGGGAATGATTGCAATTAGAGTGTCAACTATGTCACAATT
GCATGAAATTTCCATTGAGGCCACTTCAACTTTTGGAGAATTGAAAATGA
TACTATCACTTATTACAAGGTTGGAGCCAAGAGAGCAGAGGCTTTTGTTC
AAAGGTAAAGAGAGAGATGACAATGAATTCCTTCACATGATTGGTGTTAG
AGACAAGGACAAGGTTCTATTGCTAGAGGATCCAGCTATCAAAGAAAAGA
AGCTTCTTAGCATGTTAAGAGACCAACCCATTAACAATCTTTGTTGCACC
ACCATCATTGTATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin-like_dom
IPR029071	Ubiquitin-like_domsf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

rna-TanjilR_01589