LR48_mrnaVigan08g172500
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 3.890e-43 Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD +LE AFS YGEVL+SKIINDRETGRSRGFGFVTF E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.020e-41 Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD SLE AFS +GE+++SKIINDRETGRSRGFGFVTF E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.043e-41 Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD +LE AF+ YG+V++SKIINDRETGRSRGFGFVTF E+AM+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.431e-41 Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MAAADVE+RCF+GGLAWAT +SLE AF+ YGE+L+SK+I DRETGRSRGFGFVTFS+E +M DAI+ MNG+ LDGRNITVN+AQ
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.767e-40 Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = 1 Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
A+VE+RCF+GGLAWAT+ +SLE+AFS +G++ +SKIINDRETGRSRGFGFVTF E++MRDAI+GMNGQ LDGRNITVNEAQ
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.220e-40 Identity = 62/85 (72.94%), Postives = 79/85 (92.94%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MAAADVE+RCF+GGLAWAT+ ++LE+AF+ +G+V++SK+I DRETGRSRGFGFVTFS+EQ+M DAI+ MNG+ LDGRNITVN+AQ
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.292e-39 Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 1 Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
ADVE+RCF+GGL WATD SL+ AFS YG+V++SKII DRETGRSRGFGFVTF++++AMR AI+ MNGQ+LDGRNITVNEAQ
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.260e-36 Identity = 57/82 (69.51%), Postives = 73/82 (89.02%), Query Frame = 1 Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
++VE+RCF+GGLAWAT+ + L++ FS +G+V++SKIINDRE+GRSRGFGFVTF E+AMRDAI+ MNG+ LDGR ITVNEAQ
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.368e-35 Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
++VE+RCF+GGLAWAT LE+ FS +GEV++SKIINDRETGRSRGFGFVTF E++M+DAI MNG+ LDGR ITVNEAQ
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG1_ARATH (Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBG1 PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.573e-31 Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1 Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITV 243
MA AD E+RCF+GGLAWATD S+E+ F+ +GEV +SKII DRETGRS+GF FVTF E +MR AI MNGQ LDGRNIT
Sbjct: 1 MAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITA 81 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bpback to top protein sequence of LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=177bpback to top mRNA from alignment at Chr_8-CM003378.1:27303565..27304349+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_8-CM003378.1:27303565..27304349+ >LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=CDS; length=534bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularisback to top |