Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g172500 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-protein | Vigna angularis | polypeptide |
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 | Vigna angularis | polypeptide |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303567 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303567 | Vigna angularis | start_codon |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303678 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303678 | Vigna angularis | exon |
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303930..27304349 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303930..27304349 | Vigna angularis | exon |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303679..27303929 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303679..27303929 | Vigna angularis | intron |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CDS7072 | CDS7072_Va_Jingnong6_v1.1 | Vigna angularis | CDS |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27304347..27304349 | LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27304347..27304349 | Vigna angularis | stop_codon |
Homology
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)
HSP 1 Score: 144.436 bits (363), Expect = 3.890e-43
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD +LE AFS YGEVL+SKIINDRETGRSRGFGFVTF E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)
HSP 1 Score: 140.969 bits (354), Expect = 1.020e-41
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD SLE AFS +GE+++SKIINDRETGRSRGFGFVTF E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)
HSP 1 Score: 140.969 bits (354), Expect = 1.043e-41
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MA+ DVE+RCF+GGLAWATD +LE AF+ YG+V++SKIINDRETGRSRGFGFVTF E+AM+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)
HSP 1 Score: 140.198 bits (352), Expect = 1.431e-41
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MAAADVE+RCF+GGLAWAT +SLE AF+ YGE+L+SK+I DRETGRSRGFGFVTFS+E +M DAI+ MNG+ LDGRNITVN+AQ
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)
HSP 1 Score: 137.502 bits (345), Expect = 1.767e-40
Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
A+VE+RCF+GGLAWAT+ +SLE+AFS +G++ +SKIINDRETGRSRGFGFVTF E++MRDAI+GMNGQ LDGRNITVNEAQ
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)
HSP 1 Score: 137.502 bits (345), Expect = 2.220e-40
Identity = 62/85 (72.94%), Postives = 79/85 (92.94%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
MAAADVE+RCF+GGLAWAT+ ++LE+AF+ +G+V++SK+I DRETGRSRGFGFVTFS+EQ+M DAI+ MNG+ LDGRNITVN+AQ
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)
HSP 1 Score: 135.191 bits (339), Expect = 1.292e-39
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 1
Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
ADVE+RCF+GGL WATD SL+ AFS YG+V++SKII DRETGRSRGFGFVTF++++AMR AI+ MNGQ+LDGRNITVNEAQ
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)
HSP 1 Score: 125.561 bits (314), Expect = 9.260e-36
Identity = 57/82 (69.51%), Postives = 73/82 (89.02%), Query Frame = 1
Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
++VE+RCF+GGLAWAT+ + L++ FS +G+V++SKIINDRE+GRSRGFGFVTF E+AMRDAI+ MNG+ LDGR ITVNEAQ
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)
HSP 1 Score: 125.176 bits (313), Expect = 1.368e-35
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
++VE+RCF+GGLAWAT LE+ FS +GEV++SKIINDRETGRSRGFGFVTF E++M+DAI MNG+ LDGR ITVNEAQ
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match:
RBG1_ARATH (Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBG1 PE=2 SV=2)
HSP 1 Score: 114.39 bits (285), Expect = 1.573e-31
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITV 243
MA AD E+RCF+GGLAWATD S+E+ F+ +GEV +SKII DRETGRS+GF FVTF E +MR AI MNGQ LDGRNIT
Sbjct: 1 MAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITA 81
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
| Match Name | E-value | Identity | Description | |
|---|
| GRP1_SINAL | 3.890e-43 | 78.82 | Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... | [more] |
| GRP2_SINAL | 1.020e-41 | 76.47 | Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... | [more] |
| RBG7_ARATH | 1.043e-41 | 76.47 | Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... | [more] |
| GRPA_MAIZE | 1.431e-41 | 75.29 | Glycine-rich RNA-binding, abscisic acid-inducible ... | [more] |
| GRP1_DAUCA | 1.767e-40 | 76.83 | Glycine-rich RNA-binding protein OS=Daucus carota ... | [more] |
| GRP2_SORBI | 2.220e-40 | 72.94 | Glycine-rich RNA-binding protein 2 OS=Sorghum bico... | [more] |
| GRP_HORVU | 1.292e-39 | 75.61 | Glycine-rich RNA-binding protein blt801 OS=Hordeum... | [more] |
| RBG8_ARATH | 9.260e-36 | 69.51 | Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... | [more] |
| GRP10_BRANA | 1.368e-35 | 70.73 | Glycine-rich RNA-binding protein 10 OS=Brassica na... | [more] |
| RBG1_ARATH | 1.573e-31 | 67.90 | Probable glycine-rich RNA-binding protein 1 OS=Ara... | [more] |
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bp
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGGTCTGTTTGTCGCAGGCACCGCATCTGATCCGGATT
CGGAATTTGTCGATCCCGTTCTGATCTGTGATCTGATATTTTTTGCGTTA
CTTGATCTATGATACTTGTGTTACtatatgattctttttttactCACGCC
AATAGGTACGTTCATCTTCATCCTTTAATCAAAGGCGAAGATCGATCGGG
TTCTATTCGGTTTTGTTTTCGCTTGTTTTCTTAGATCTGATTTTTCATTG
TGTTTCATTTTGCAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGG
CTTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCC
AAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAA
GCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGG
ATATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACG
GTGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGA
CGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGG
TTATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTC
GTGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
back to topprotein sequence of LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1
>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=177bp
MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRG
FGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGG
YGGGGGGYNRGGGGGYGGGGGYGGGGGGGYGGRREGGYSRNSGGYGGGGG
YGGGRDRSYGDSGSRSRGGDGGDGSWN
back to topmRNA from alignment at Chr_8-CM003378.1:27303565..27304349+
Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularis
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGGTCTGTTTGTCGCAGGCACCGCATCTGATCCGGATT
CGGAATTTGTCGATCCCGTTCTGATCTGTGATCTGATATTTTTTGCGTTA
CTTGATCTATGATACTTGTGTTACtatatgattctttttttactCACGCC
AATAGGTACGTTCATCTTCATCCTTTAATCAAAGGCGAAGATCGATCGGG
TTCTATTCGGTTTTGTTTTCGCTTGTTTTCTTAGATCTGATTTTTCATTG
TGTTTCATTTTGCAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGG
CTTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCC
AAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAA
GCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGG
ATATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACG
GTGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGA
CGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGG
TTATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTC
GTGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
back to topCoding sequence (CDS) from alignment at Chr_8-CM003378.1:27303565..27304349+
>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=CDS; length=534bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularis
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGC
TTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCCA
AGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAAG
CTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGGA
TATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACGG
TGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGAC
GTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGGT
TATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTCG
TGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
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