LR48_mrnaVigan08g172500

Transcript Overview
NameLR48_mrnaVigan08g172500
Unique NameLR48_mrnaVigan08g172500_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length785
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003378.1supercontigChr_8-CM003378.1:27303565..27304349 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR119Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR126Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR149Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL001Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR080Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0088Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0537Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0814Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR179Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR180Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR182Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0213Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0245Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR151Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR171Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR187Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR128Pisum sativum Cameor genome v1aPisum sativum
aspsR154Pisum sativum Cameor genome v1aPisum sativum
aspsR159Pisum sativum Cameor genome v1aPisum sativum
aspsR165Pisum sativum Cameor genome v1aPisum sativum
aspvR130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR171Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR093Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR129Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR130Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR126Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR149Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR161Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR127Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR133Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR153Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR166Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR117Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR123Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR145Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR148Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR155Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR160Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR088Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR125Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR127Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR108Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR111Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR112Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.6g052680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.011G045000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun11g175800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_012363Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.2g217720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_11698.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat5g006880.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014663016.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_17297Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_15369Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat7g140640.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr11.1639Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_18810.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Tiffany.R1.2g174600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cr_15855.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_04780Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_03391Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_007886Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun09g265400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_23476Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_14477.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004507391.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg56155.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.009G023700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr09.1127Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004500753.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.6g043800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg30460.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014644304.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan04g253600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan08g172500gene-LR48_Vigan08g172500_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g172500LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303567LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303567Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303678LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303565..27303678Vigna angularisexon
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303930..27304349LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303930..27304349Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303679..27303929LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27303679..27303929Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS7072CDS7072_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27304347..27304349LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27304347..27304349Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.890e-43
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            MA+ DVE+RCF+GGLAWATD  +LE AFS YGEVL+SKIINDRETGRSRGFGFVTF  E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.020e-41
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            MA+ DVE+RCF+GGLAWATD  SLE AFS +GE+++SKIINDRETGRSRGFGFVTF  E++M+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.043e-41
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            MA+ DVE+RCF+GGLAWATD  +LE AF+ YG+V++SKIINDRETGRSRGFGFVTF  E+AM+DAI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.431e-41
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            MAAADVE+RCF+GGLAWAT  +SLE AF+ YGE+L+SK+I DRETGRSRGFGFVTFS+E +M DAI+ MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.767e-40
Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            A+VE+RCF+GGLAWAT+ +SLE+AFS +G++ +SKIINDRETGRSRGFGFVTF  E++MRDAI+GMNGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.220e-40
Identity = 62/85 (72.94%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            MAAADVE+RCF+GGLAWAT+ ++LE+AF+ +G+V++SK+I DRETGRSRGFGFVTFS+EQ+M DAI+ MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.292e-39
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:   10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            ADVE+RCF+GGL WATD  SL+ AFS YG+V++SKII DRETGRSRGFGFVTF++++AMR AI+ MNGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.260e-36
Identity = 57/82 (69.51%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:   10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            ++VE+RCF+GGLAWAT+ + L++ FS +G+V++SKIINDRE+GRSRGFGFVTF  E+AMRDAI+ MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.368e-35
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:   10 ADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQ 255
            ++VE+RCF+GGLAWAT    LE+ FS +GEV++SKIINDRETGRSRGFGFVTF  E++M+DAI  MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
[Close]
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Match: RBG1_ARATH (Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBG1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.573e-31
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITV 243
            MA AD E+RCF+GGLAWATD  S+E+ F+ +GEV +SKII DRETGRS+GF FVTF  E +MR AI  MNGQ LDGRNIT 
Sbjct:    1 MAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITA 81
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g172500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_SINAL3.890e-4378.82Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP2_SINAL1.020e-4176.47Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
RBG7_ARATH1.043e-4176.47Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRPA_MAIZE1.431e-4175.29Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_DAUCA1.767e-4076.83Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SORBI2.220e-4072.94Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP_HORVU1.292e-3975.61Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
RBG8_ARATH9.260e-3669.51Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.368e-3570.73Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
RBG1_ARATH1.573e-3167.90Probable glycine-rich RNA-binding protein 1 OS=Ara... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 9..82
e-value: 1.9E-26
score: 103.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..79
e-value: 2.0E-20
score: 72.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..86
score: 19.007
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..103
e-value: 2.1E-28
score: 100.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..177
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 8..141

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bp
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGGTCTGTTTGTCGCAGGCACCGCATCTGATCCGGATT
CGGAATTTGTCGATCCCGTTCTGATCTGTGATCTGATATTTTTTGCGTTA
CTTGATCTATGATACTTGTGTTACtatatgattctttttttactCACGCC
AATAGGTACGTTCATCTTCATCCTTTAATCAAAGGCGAAGATCGATCGGG
TTCTATTCGGTTTTGTTTTCGCTTGTTTTCTTAGATCTGATTTTTCATTG
TGTTTCATTTTGCAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGG
CTTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCC
AAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAA
GCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGG
ATATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACG
GTGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGA
CGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGG
TTATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTC
GTGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
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protein sequence of LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=177bp
MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRG
FGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGG
YGGGGGGYNRGGGGGYGGGGGYGGGGGGGYGGRREGGYSRNSGGYGGGGG
YGGGRDRSYGDSGSRSRGGDGGDGSWN
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mRNA from alignment at Chr_8-CM003378.1:27303565..27304349+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=mRNA; length=785bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularis
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGGTCTGTTTGTCGCAGGCACCGCATCTGATCCGGATT
CGGAATTTGTCGATCCCGTTCTGATCTGTGATCTGATATTTTTTGCGTTA
CTTGATCTATGATACTTGTGTTACtatatgattctttttttactCACGCC
AATAGGTACGTTCATCTTCATCCTTTAATCAAAGGCGAAGATCGATCGGG
TTCTATTCGGTTTTGTTTTCGCTTGTTTTCTTAGATCTGATTTTTCATTG
TGTTTCATTTTGCAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGG
CTTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCC
AAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAA
GCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGG
ATATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACG
GTGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGA
CGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGG
TTATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTC
GTGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
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Coding sequence (CDS) from alignment at Chr_8-CM003378.1:27303565..27304349+

>LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g172500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g172500; organism=Vigna angularis; type=CDS; length=534bp; location=Sequence derived from: Chr_8-CM003378.1:27303565..27304349+ (Vigna angularis
ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATG
GGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAG
TCCTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGC
TTTGGATTTGTGACTTTTTCTACGGAGCAGGCCATGAGAGACGCGATCCA
AGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAAG
CTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGGA
TATggcggtggtggtggtggataCAATCgtggtggaggaggtggatACGG
TGGCGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGAC
GTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGGT
TATGGCGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTCG
TGGCGGTGATGGAGGGGACGGTAGCTGGAACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding