LR48_mrnaVigan09g031100
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FC_ARATH (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 2.911e-85 Identity = 146/274 (53.28%), Postives = 187/274 (68.25%), Query Frame = 1 Query: 181 NCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQASGIQ----EITPTDFEMEDDYWFQSDPGVRLTQLW 990
NCRYDSSLGLLTKKFV LIQ+A DGTLDLN A +LEVQKRRIYDITNVLEG+GLIEKT+KNHI+WKG D LG ++L +QI+ LK+EVES+ + E LDD IR++QE LR+LEE + ++Y+F+T+E+I SLP FQNQ ++AIKAP AS+IEVPDPDE+ F Q QY+M++RS GPI +YLLS KY+ DS E+ D N S+ + G+ +I +D +++ DYWF+SD V LT LW
Sbjct: 153 NCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDEMS--FPQ-QYRMVIRSRMGPIDVYLLS----KYKGDSA-----------------------ETSDKLGNESD-----QKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLW 391
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FB_ARATH (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.292e-76 Identity = 153/347 (44.09%), Postives = 204/347 (58.79%), Query Frame = 1 Query: 40 NLEVVPPPVQTQSTERGKQNGKSKLSRNTKSGT--HRPSADSP--NLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYED--DSVKRVKLMDPSWNSEQC---IKRGVGLLESH--------------------DDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPG-VRLTQLW 990
N V+ PV S + GK S+ +++ KSGT +A SP N CRYDSSLGLLTKKF++LI+ A DG LDLNK A+ LEVQKRRIYDITNVLEG+GLIEKT KN IQWKG D P E I L+ EV++L A E LDD IR+ QE L +L E E++++ LF+T+ +I +LPCFQN+ +IA+KAP + +EVPDPDE QR+Y++I+RS GPI +YL+S+ + +ED + + + D N + GL E+H DD Q H+ GI +I P D +M DYWF+S+ G V +T +W
Sbjct: 79 NTGVLQTPV---SGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY--QRRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVDDTQRVYSDIESHDF-VDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMW 419
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FA_ARATH (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 4.857e-74 Identity = 146/325 (44.92%), Postives = 202/325 (62.15%), Query Frame = 1 Query: 88 GKQNGKSKLSRNTKSGTHRP---SADSP-NLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGL-GPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKR------VKLMDPSWNSEQ------CIKRGVGLLESHDDKQ---NTSESFNFHESQASGIQEITPTDFEM-EDDYWFQSDPGVRLTQLWGTN 999
G+ N KSK ++ KS P +A SP LT +CRYDSSLGLLTKKFV+LI+ A+DG LDLNK AE LEVQKRRIYDITNVLEG+ LIEK KN I WKG D G + + + L+AE+E+L E LD+ IR+ +E LR+L E+E +QK+LF+T+E+I SLP FQNQ +IA+KAP + +EVPDPDE QR+Y++I+RS GPI +YL+S+ + K+ED + + + S ++ + + SHD + N+ + Q G+ +ITP+D E E DYW S+ + +T +W T+
Sbjct: 131 GRVNIKSK-AKGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAAD-HPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIWKTD 453
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_XENLA (Transcription factor E2F4 OS=Xenopus laevis OX=8355 GN=e2f4 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 4.297e-43 Identity = 92/199 (46.23%), Postives = 128/199 (64.32%), Query Frame = 1 Query: 151 ADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
AD LT V R++ SLGLLT KFVSL+Q+A DG LDL A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG G RE+ +++ LKAE+ L RE ELD Q+ ++N+ + + +L E+I CF+ ++AI+AP + +EVP P E+ Q+++++ ++S TGPI + L++KD
Sbjct: 2 ADPAQLT-VTPSRHEKSLGLLTSKFVSLLQEAEDGVLDLKAAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIDLKAELADLEQREQELDQQRVWVQQSIKNVTDDVQNTGLAYLNHEDICR--CFRGDTLLAIRAPSGTCLEVPVP---ENTNGQKKFQIHLKSTTGPIEVLLVNKD 194
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_HUMAN (Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 8.866e-43 Identity = 89/187 (47.59%), Postives = 125/187 (66.84%), Query Frame = 1 Query: 187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
R++ SLGLLT KFVSL+Q+A+DG LDL A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG G RE+ +++ LKAE+E L RE ELD Q+ +RN+ E + ++T E+I CF ++AI+AP + +EVP P E + Q++Y++ ++S +GPI + L++K+
Sbjct: 17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP---EGLNGQKKYQIHLKSVSGPIEVLLVNKE 198
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_MOUSE (Transcription factor E2F5 OS=Mus musculus OX=10090 GN=E2f5 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 1.289e-42 Identity = 87/201 (43.28%), Postives = 134/201 (66.67%), Query Frame = 1 Query: 145 PSADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
PS+ A + R++ SLGLLT KFVSL+Q+A+DG LDL A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG G +E+ +++ LKAE+E L +E ELD Q+ ++N+ E + ++ ++T E+I + CF ++AI+AP + +EVP P+ ++ Q++Y++ ++S +GPI++ L++K+
Sbjct: 26 PSSQPSAALAGGSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICN--CFHGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 222
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_MOUSE (Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.116e-42 Identity = 89/187 (47.59%), Postives = 125/187 (66.84%), Query Frame = 1 Query: 187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
R++ SLGLLT KFVSL+Q+A+DG LDL A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG G RE+ +++ LKAE+E L RE ELD Q+ +RN+ E + ++T E+I CF ++AI+AP + +EVP P E + Q++Y++ ++S +GPI + L++K+
Sbjct: 17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP---EGLNGQKKYQIHLKSMSGPIEVLLVNKE 198
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_RAT (Transcription factor E2F5 (Fragment) OS=Rattus norvegicus OX=10116 GN=E2f5 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.707e-42 Identity = 85/187 (45.45%), Postives = 129/187 (68.98%), Query Frame = 1 Query: 187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
R++ SLGLLT KFVSL+Q+A+DG LDL A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG G +E+ +++ LKAE+E L +E ELD Q+ ++N+ E + ++ ++T E+I S CF ++AI+AP + +EVP P+ ++ Q++Y++ ++S +GPI++ L++K+
Sbjct: 5 RHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICS--CFNGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 187
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_HUMAN (Transcription factor E2F5 OS=Homo sapiens OX=9606 GN=E2F5 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.117e-41 Identity = 83/187 (44.39%), Postives = 129/187 (68.98%), Query Frame = 1 Query: 187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
R++ SLGLLT KFVSL+Q+A+DG LDL A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG G +E+ +++ LKAE+E L +E ELD Q+ ++N+ + + ++ ++T E+I + CF ++AI+AP + +EVP P+ ++ Q++Y++ ++S +GPI++ L++K+
Sbjct: 50 RHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN--CFNGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 232
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F3_MOUSE (Transcription factor E2F3 OS=Mus musculus OX=10090 GN=E2f3 PE=1 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 3.823e-38 Identity = 85/196 (43.37%), Postives = 120/196 (61.22%), Query Frame = 1 Query: 148 SADSPNL--TAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYL 729
S DSP + RYD+SLGLLTKKF+ L+ + DG LDLNK AE+L+VQKRRIYDITNVLEG+ LI+K SKN++QW GC + Q GL EV L E +LD+ I+ L+ L E +Q+ ++T ++I + ++Q +I +KAP + +EV PD +ES+ ++ + S GPI +YL
Sbjct: 155 SPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEV--PDSIESL------QIHLASTQGPIEVYL 342 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=mRNA; length=2633bpback to top protein sequence of LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=335bpback to top mRNA from alignment at Chr_9-CM003379.1:3516363..3518995- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=mRNA; length=2633bp; location=Sequence derived from: Chr_9-CM003379.1:3516363..3518995- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3516363..3518995- >LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=CDS; length=1008bp; location=Sequence derived from: Chr_9-CM003379.1:3516363..3518995- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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