LR48_mrnaVigan09g031100

Transcript Overview


Name	LR48_mrnaVigan09g031100
Unique Name	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	2633
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_9-CM003379.1	supercontig	Chr_9-CM003379.1:3516363..3518995 -	Vigna angularis Jingnong 6 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis Jingnong 6 genome v1.1	2020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.1	2020-05-21
BLAST: V. angularis Jingnong 6 genome v1.1	2020-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascaR186	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR201	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR224	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR231	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
asasL010	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asasR106	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asasR121	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasL0092	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0307	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0363	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0416	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0540	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0598	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0819	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0822	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0971	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiR275	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ascaiR309	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
asccR0374	Cajanus cajan Asha genome v1.0	Cajanus cajan
asccR0383	Cajanus cajan Asha genome v1.0	Cajanus cajan
ascrR249	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
aspsR191	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR219	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR221	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR232	Pisum sativum Cameor genome v1a	Pisum sativum
aspvR175	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR187	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR251	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuR142	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR157	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR198	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR203	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR204	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
astifR188	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR198	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR217	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR226	Vicia faba cv. Tiffany genome v1.0	Vicia faba
asvfhR191	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR200	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR221	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR232	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvrvR148	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR157	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR164	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvssR185	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR206	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR238	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR241	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR251	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvuaR136	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR183	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR195	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ascanR173	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR188	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR214	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Psat5g013280.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-XM_014645129.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Ca_04894	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Ca_14972.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vigun09g252900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
evm.model.Chr09.1246	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_09738	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Hedin2.R1.2g206400.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Phvul.009G016300.3	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-XM_012715945.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Cr_12726.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
rna-KK1_019373	Cajanus cajan Asha genome v1.0	Cajanus cajan
jg55955.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vfaba.Tiffany.R1.2g167080.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LR48_Vigan09g031100	gene-LR48_Vigan09g031100_Va_Jingnong6_v1.1	Vigna angularis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g031100	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-protein	Vigna angularis	polypeptide
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1	Vigna angularis	polypeptide

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518993..3518995	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518993..3518995	Vigna angularis	start_codon

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518842..3518995	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518842..3518995	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518677..3518727	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518677..3518727	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518498..3518583	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518498..3518583	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518230..3518318	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518230..3518318	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518089..3518143	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518089..3518143	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517410..3517462	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517410..3517462	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517278..3517328	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517278..3517328	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517145..3517193	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517145..3517193	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516987..3517055	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516987..3517055	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516829..3516905	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516829..3516905	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516514..3516712	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516514..3516712	Vigna angularis	exon
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516363..3516437	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516363..3516437	Vigna angularis	exon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518728..3518841	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518728..3518841	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518584..3518676	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518584..3518676	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518319..3518497	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518319..3518497	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518144..3518229	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3518144..3518229	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517463..3518088	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517463..3518088	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517329..3517409	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517329..3517409	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517194..3517277	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517194..3517277	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517056..3517144	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3517056..3517144	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516906..3516986	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516906..3516986	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516713..3516828	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516713..3516828	Vigna angularis	intron
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516438..3516513	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516438..3516513	Vigna angularis	intron

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS19871	CDS19871_Va_Jingnong6_v1.1	Vigna angularis	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516363..3516365	LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3516363..3516365	Vigna angularis	stop_codon

Homology

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FC_ARATH (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.911e-85
Identity = 146/274 (53.28%), Postives = 187/274 (68.25%), Query Frame = 1

Query:  181 NCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQASGIQ----EITPTDFEMEDDYWFQSDPGVRLTQLW 990
            NCRYDSSLGLLTKKFV LIQ+A DGTLDLN  A +LEVQKRRIYDITNVLEG+GLIEKT+KNHI+WKG D LG ++L +QI+ LK+EVES+ + E  LDD IR++QE LR+LEE +  ++Y+F+T+E+I SLP FQNQ ++AIKAP AS+IEVPDPDE+   F Q QY+M++RS  GPI +YLLS    KY+ DS                        E+ D   N S+     +    G+     +I  +D +++ DYWF+SD  V LT LW
Sbjct:  153 NCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDEMS--FPQ-QYRMVIRSRMGPIDVYLLS----KYKGDSA-----------------------ETSDKLGNESD-----QKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLW 391

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FB_ARATH (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.292e-76
Identity = 153/347 (44.09%), Postives = 204/347 (58.79%), Query Frame = 1

Query:   40 NLEVVPPPVQTQSTERGKQNGKSKLSRNTKSGT--HRPSADSP--NLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYED--DSVKRVKLMDPSWNSEQC---IKRGVGLLESH--------------------DDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPG-VRLTQLW 990
            N  V+  PV   S + GK    S+ +++ KSGT     +A SP  N      CRYDSSLGLLTKKF++LI+ A DG LDLNK A+ LEVQKRRIYDITNVLEG+GLIEKT KN IQWKG D   P E    I  L+ EV++L A E  LDD IR+ QE L +L E E++++ LF+T+ +I +LPCFQN+ +IA+KAP  + +EVPDPDE      QR+Y++I+RS  GPI +YL+S+ +  +ED   + +   + D   N       +    GL E+H                    DD Q        H+    GI +I P D +M  DYWF+S+ G V +T +W
Sbjct:   79 NTGVLQTPV---SGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY--QRRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVDDTQRVYSDIESHDF-VDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMW 419

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2FA_ARATH (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.857e-74
Identity = 146/325 (44.92%), Postives = 202/325 (62.15%), Query Frame = 1

Query:   88 GKQNGKSKLSRNTKSGTHRP---SADSP-NLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGL-GPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKR------VKLMDPSWNSEQ------CIKRGVGLLESHDDKQ---NTSESFNFHESQASGIQEITPTDFEM-EDDYWFQSDPGVRLTQLWGTN 999
            G+ N KSK ++  KS    P   +A SP  LT   +CRYDSSLGLLTKKFV+LI+ A+DG LDLNK AE LEVQKRRIYDITNVLEG+ LIEK  KN I WKG D   G  + +  +  L+AE+E+L   E  LD+ IR+ +E LR+L E+E +QK+LF+T+E+I SLP FQNQ +IA+KAP  + +EVPDPDE      QR+Y++I+RS  GPI +YL+S+ + K+ED +         + +   S ++         +      + SHD        +   N+ + Q  G+ +ITP+D E  E DYW  S+  + +T +W T+
Sbjct:  131 GRVNIKSK-AKGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAAD-HPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIWKTD 453

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_XENLA (Transcription factor E2F4 OS=Xenopus laevis OX=8355 GN=e2f4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.297e-43
Identity = 92/199 (46.23%), Postives = 128/199 (64.32%), Query Frame = 1

Query:  151 ADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            AD   LT V   R++ SLGLLT KFVSL+Q+A DG LDL   A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG   G   RE+ +++  LKAE+  L  RE ELD      Q+ ++N+ +   +    +L  E+I    CF+   ++AI+AP  + +EVP P   E+   Q+++++ ++S TGPI + L++KD
Sbjct:    2 ADPAQLT-VTPSRHEKSLGLLTSKFVSLLQEAEDGVLDLKAAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIDLKAELADLEQREQELDQQRVWVQQSIKNVTDDVQNTGLAYLNHEDICR--CFRGDTLLAIRAPSGTCLEVPVP---ENTNGQKKFQIHLKSTTGPIEVLLVNKD 194

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_HUMAN (Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 8.866e-43
Identity = 89/187 (47.59%), Postives = 125/187 (66.84%), Query Frame = 1

Query:  187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            R++ SLGLLT KFVSL+Q+A+DG LDL   A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG   G   RE+ +++  LKAE+E L  RE ELD      Q+ +RN+ E   +    ++T E+I    CF    ++AI+AP  + +EVP P   E +  Q++Y++ ++S +GPI + L++K+
Sbjct:   17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP---EGLNGQKKYQIHLKSVSGPIEVLLVNKE 198

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_MOUSE (Transcription factor E2F5 OS=Mus musculus OX=10090 GN=E2f5 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.289e-42
Identity = 87/201 (43.28%), Postives = 134/201 (66.67%), Query Frame = 1

Query:  145 PSADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            PS+      A  + R++ SLGLLT KFVSL+Q+A+DG LDL   A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG   G   +E+ +++  LKAE+E L  +E ELD      Q+ ++N+ E   + ++ ++T E+I +  CF    ++AI+AP  + +EVP P+  ++   Q++Y++ ++S +GPI++ L++K+
Sbjct:   26 PSSQPSAALAGGSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICN--CFHGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 222

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F4_MOUSE (Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.116e-42
Identity = 89/187 (47.59%), Postives = 125/187 (66.84%), Query Frame = 1

Query:  187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            R++ SLGLLT KFVSL+Q+A+DG LDL   A+ L V QKRRIYDITNVLEG+GLIEK SKN IQWKG   G   RE+ +++  LKAE+E L  RE ELD      Q+ +RN+ E   +    ++T E+I    CF    ++AI+AP  + +EVP P   E +  Q++Y++ ++S +GPI + L++K+
Sbjct:   17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICR--CFAGDTLLAIRAPSGTSLEVPIP---EGLNGQKKYQIHLKSMSGPIEVLLVNKE 198

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_RAT (Transcription factor E2F5 (Fragment) OS=Rattus norvegicus OX=10116 GN=E2f5 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.707e-42
Identity = 85/187 (45.45%), Postives = 129/187 (68.98%), Query Frame = 1

Query:  187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            R++ SLGLLT KFVSL+Q+A+DG LDL   A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG   G   +E+ +++  LKAE+E L  +E ELD      Q+ ++N+ E   + ++ ++T E+I S  CF    ++AI+AP  + +EVP P+  ++   Q++Y++ ++S +GPI++ L++K+
Sbjct:    5 RHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQKLWLQQSIKNVMEDSINNRFSYVTHEDICS--CFNGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 187

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F5_HUMAN (Transcription factor E2F5 OS=Homo sapiens OX=9606 GN=E2F5 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.117e-41
Identity = 83/187 (44.39%), Postives = 129/187 (68.98%), Query Frame = 1

Query:  187 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEV-QKRRIYDITNVLEGVGLIEKTSKNHIQWKGCD-GLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKD 741
            R++ SLGLLT KFVSL+Q+A+DG LDL   A+ L V QKRRIYDITNVLEG+ LIEK SKN IQWKG   G   +E+ +++  LKAE+E L  +E ELD      Q+ ++N+ +   + ++ ++T E+I +  CF    ++AI+AP  + +EVP P+  ++   Q++Y++ ++S +GPI++ L++K+
Sbjct:   50 RHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN--CFNGDTLLAIQAPSGTQLEVPIPEMGQN--GQKKYQINLKSHSGPIHVLLINKE 232

[Close]

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Match: E2F3_MOUSE (Transcription factor E2F3 OS=Mus musculus OX=10090 GN=E2f3 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.823e-38
Identity = 85/196 (43.37%), Postives = 120/196 (61.22%), Query Frame = 1

Query:  148 SADSPNL--TAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLXXXXXXQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYL 729
            S DSP    +     RYD+SLGLLTKKF+ L+  + DG LDLNK AE+L+VQKRRIYDITNVLEG+ LI+K SKN++QW GC       +  Q  GL  EV  L   E +LD+ I+     L+ L E   +Q+  ++T ++I  +   ++Q +I +KAP  + +EV  PD +ES+      ++ + S  GPI +YL
Sbjct:  155 SPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEV--PDSIESL------QIHLASTQGPIEVYL 342

The following BLAST results are available for this feature:

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss

BLAST of LR48_mrnaVigan09g031100 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
E2FC_ARATH	2.911e-85	53.28	Transcription factor E2FC OS=Arabidopsis thaliana ...	[more]
E2FB_ARATH	1.292e-76	44.09	Transcription factor E2FB OS=Arabidopsis thaliana ...	[more]
E2FA_ARATH	4.857e-74	44.92	Transcription factor E2FA OS=Arabidopsis thaliana ...	[more]
E2F4_XENLA	4.297e-43	46.23	Transcription factor E2F4 OS=Xenopus laevis OX=835...	[more]
E2F4_HUMAN	8.866e-43	47.59	Transcription factor E2F4 OS=Homo sapiens OX=9606 ...	[more]
E2F5_MOUSE	1.289e-42	43.28	Transcription factor E2F5 OS=Mus musculus OX=10090...	[more]
E2F4_MOUSE	2.116e-42	47.59	Transcription factor E2F4 OS=Mus musculus OX=10090...	[more]
E2F5_RAT	3.707e-42	45.45	Transcription factor E2F5 (Fragment) OS=Rattus nor...	[more]
E2F5_HUMAN	1.117e-41	44.39	Transcription factor E2F5 OS=Homo sapiens OX=9606 ...	[more]
E2F3_MOUSE	3.823e-38	43.37	Transcription factor E2F3 OS=Mus musculus OX=10090...	[more]

InterPro

Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
IPR003316	E2F/DP family, winged-helix DNA-binding domain	SMART	SM01372	E2F_TDP_2	coord: 63..128 e-value: 1.1E-34 score: 131.2
IPR003316	E2F/DP family, winged-helix DNA-binding domain	PFAM	PF02319	E2F_TDP	coord: 65..128 e-value: 6.2E-25 score: 87.0
IPR032198	E2F transcription factor, CC-MB domain	PFAM	PF16421	E2F_CC-MB	coord: 144..244 e-value: 2.6E-25 score: 88.5
IPR032198	E2F transcription factor, CC-MB domain	CDD	cd14660	E2F_DD	coord: 139..247 e-value: 4.16525E-35 score: 121.471
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 58..130 e-value: 1.0E-28 score: 100.6
IPR037241	E2F-DP heterodimerization region	SUPERFAMILY	144074	E2F-DP heterodimerization region	coord: 140..247
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 63..126

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_9-CM003379.1:3516363..3518995-
coding sequence from alignment at Chr_9-CM003379.1:3516363..3518995-

mRNA sequence

>LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=mRNA; length=2633bp
ATGCAGCCGAGTCAAAGATATGAAAATAGTCACAGAAGTAATCTCGAAGT
GGTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATG
GTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCACAGACCTAGT
GCCGGTAACACTCTTTTAGATTATTAGATTATGATTCTGTTAAACTCTTC
ATTATGTTGCTTTTATATTATAACTATTATCTTGTTGGAGTTTATGTTGG
GTGTATTTTTCTTATCAGATTCTCCTAATTTAACTGCGGTTAACAACTGT
CGTTATGACAGTTCCTTAGGTATGTCTATACTCAAGTATTACTCCACTGT
CCCTTTTTAACTCAATTGTCAAGCTGACTCTCTTTATAATGCTTATAATA
TGCCTTGGACAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGAT
GCTAGGGATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTGGAGGT
ATAGAAATGTCTTTCATAGTTTTGTTGACAGAAGGACCTTTTTGTCAGGC
ATATTTTGATCTTTTCTTCCAGTTCTTTTAATTTAAAATTTTCTATTTGT
GCTATTAGTACATGCACTTCTGCTTCATGGCTTTTTAATTTCTGGTTTTA
TAATATATCTAAACTTAATTGTGTCAGGTTCAGAAAAGGAGAATCTATGA
CATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAA
ATCATATACAGTGGAAGTAAATATTATGATTTTGTTTGTTACTTTGAAGT
TTCTTTTATCAGATTTCCTGTATATATGATACACGTTGTGTTTTACGAGC
AGGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATAAACGG
TCTAAAGGTTTTGGATCTTTTTTAATGGACTATGTTCAAATCTCCTGCTT
TTAGACTGCTTGCATGGTTGCTTTGAAGTGTAAACATGACTTAATTTTTA
CATTCGATTATATTGAAAAATGAAAACCTACTTTGCCTCTTTTGAAGCCA
TGGTATGGTATGTTCAACATATTTCTTCTAGAAGCGAAAAGAAAATTTTC
AGGTCACATAAATGCATCTTAAGAGGAACACTTGTATGAGTATCTTTGTT
ATGTAGAAACTCAAGCTTATGCTTGACATGTGTCTGTATGACGTTTGTGT
GTCTTACAAATCCATGATAGATACCTTTTAATAAGCTTCTTGGTCGAGGC
AAAATCTGAATGTAACATGATTCCATTTCTTCTGATACTATTTAAATATA
GATAGGGTATAAGCCTCATATTGCGGATCGAATGTATTGGTCTCGCCACT
TCTATCCTGAACTAAATATGCCTATGCAGATAATATAGCCAACTTCTGTT
CGTGCCTTGGACTGATGTAATTGATCACCAATTTTAGTTTAAAATGCATG
TTGTTCTTAGGATTTTAGCTCCACCTGCCAATACTGCTTGTGTTAGTGAT
TCAGTCCAACTTTGACAATTTGATTCGATACAGGCTGAAGTTGAAAGTCT
ATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGTCTGTTTGTAAAG
TGATATCGCGTGAAGTTCCATATGGTTGATCAATTCTTTTAAAACAATTA
CCATTTTAATTTCTCAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGA
AAGTGAAAGCTCTCAGAAGTAGGAATTTCTGACAACTTGCCTTGTATTTT
AGTTCCAATTTATAGGTTTCTTTACCTGATGGTAAGCTTGCTTGATCATT
AGGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCA
GGTCATTTTTTTTTCTATACGCTTAGATTTTATGAAGATATATCTATTTA
CCATTATGGCCACTTTACTTATTATCTACTATTTTCACAGAATCAAGAAA
TTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCT
GATGAGGTGGTATCTACTTTCGACTAACTTGGGTGTTCAAAAGGTTTGGT
GTATCACGAGTTTTAACTGACTCCTCACTCAAATGAGCAGGAATCAGTTT
TCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATA
TATTTGTACCTCTTGAGGTAAACATTGCATGCAAAAGTTTCTTTATTATT
ATGTTAAATCTTTGTTTGTTTAAAGGTGATTTTTCCTCTGTATTGAGTCT
TCTACTAACTGCTGAACTTTTTAACCCTTGAAGCAAGGACGACTGCAAGT
ATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAAC
AGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGA
TAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTG
GAATTCAAGAAATAACTCCCACTGATTTTGAAGTATGTATAACTTAAGCT
CTGAGTTGTAAAATATCAAAATCTGGAAAGACATGTCATGTCATTGTGTT
TATTGCAGATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGG
CTAACACAACTGTGGGGTACCAATATCTTCTAA

protein sequence of LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=335bp
MQPSQRYENSHRSNLEVVPPPVQTQSTERGKQNGKSKLSRNTKSGTHRPS
ADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQK
RRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVES
LYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEI
IAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCK
YEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQAS
GIQEITPTDFEMEDDYWFQSDPGVRLTQLWGTNIF

mRNA from alignment at Chr_9-CM003379.1:3516363..3518995-

Legend: polypeptidestart_codonexonCDSintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=mRNA; length=2633bp; location=Sequence derived from: Chr_9-CM003379.1:3516363..3518995- (Vigna angularis
ATGCAGCCGAGTCAAAGATATGAAAATAGTCACAGAAGTAATCTCGAAGT
GGTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATG
GTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCACAGACCTAGT
GCCGGTAACACTCTTTTAGATTATTAGATTATGATTCTGTTAAACTCTTC
ATTATGTTGCTTTTATATTATAACTATTATCTTGTTGGAGTTTATGTTGG
GTGTATTTTTCTTATCAGATTCTCCTAATTTAACTGCGGTTAACAACTGT
CGTTATGACAGTTCCTTAGGTATGTCTATACTCAAGTATTACTCCACTGT
CCCTTTTTAACTCAATTGTCAAGCTGACTCTCTTTATAATGCTTATAATA
TGCCTTGGACAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGAT
GCTAGGGATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTGGAGGT
ATAGAAATGTCTTTCATAGTTTTGTTGACAGAAGGACCTTTTTGTCAGGC
ATATTTTGATCTTTTCTTCCAGTTCTTTTAATTTAAAATTTTCTATTTGT
GCTATTAGTACATGCACTTCTGCTTCATGGCTTTTTAATTTCTGGTTTTA
TAATATATCTAAACTTAATTGTGTCAGGTTCAGAAAAGGAGAATCTATGA
CATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAA
ATCATATACAGTGGAAGTAAATATTATGATTTTGTTTGTTACTTTGAAGT
TTCTTTTATCAGATTTCCTGTATATATGATACACGTTGTGTTTTACGAGC
AGGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATAAACGG
TCTAAAGGTTTTGGATCTTTTTTAATGGACTATGTTCAAATCTCCTGCTT
TTAGACTGCTTGCATGGTTGCTTTGAAGTGTAAACATGACTTAATTTTTA
CATTCGATTATATTGAAAAATGAAAACCTACTTTGCCTCTTTTGAAGCCA
TGGTATGGTATGTTCAACATATTTCTTCTAGAAGCGAAAAGAAAATTTTC
AGGTCACATAAATGCATCTTAAGAGGAACACTTGTATGAGTATCTTTGTT
ATGTAGAAACTCAAGCTTATGCTTGACATGTGTCTGTATGACGTTTGTGT
GTCTTACAAATCCATGATAGATACCTTTTAATAAGCTTCTTGGTCGAGGC
AAAATCTGAATGTAACATGATTCCATTTCTTCTGATACTATTTAAATATA
GATAGGGTATAAGCCTCATATTGCGGATCGAATGTATTGGTCTCGCCACT
TCTATCCTGAACTAAATATGCCTATGCAGATAATATAGCCAACTTCTGTT
CGTGCCTTGGACTGATGTAATTGATCACCAATTTTAGTTTAAAATGCATG
TTGTTCTTAGGATTTTAGCTCCACCTGCCAATACTGCTTGTGTTAGTGAT
TCAGTCCAACTTTGACAATTTGATTCGATACAGGCTGAAGTTGAAAGTCT
ATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGTCTGTTTGTAAAG
TGATATCGCGTGAAGTTCCATATGGTTGATCAATTCTTTTAAAACAATTA
CCATTTTAATTTCTCAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGA
AAGTGAAAGCTCTCAGAAGTAGGAATTTCTGACAACTTGCCTTGTATTTT
AGTTCCAATTTATAGGTTTCTTTACCTGATGGTAAGCTTGCTTGATCATT
AGGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCA
GGTCATTTTTTTTTCTATACGCTTAGATTTTATGAAGATATATCTATTTA
CCATTATGGCCACTTTACTTATTATCTACTATTTTCACAGAATCAAGAAA
TTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCT
GATGAGGTGGTATCTACTTTCGACTAACTTGGGTGTTCAAAAGGTTTGGT
GTATCACGAGTTTTAACTGACTCCTCACTCAAATGAGCAGGAATCAGTTT
TCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATA
TATTTGTACCTCTTGAGGTAAACATTGCATGCAAAAGTTTCTTTATTATT
ATGTTAAATCTTTGTTTGTTTAAAGGTGATTTTTCCTCTGTATTGAGTCT
TCTACTAACTGCTGAACTTTTTAACCCTTGAAGCAAGGACGACTGCAAGT
ATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAAC
AGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGA
TAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTG
GAATTCAAGAAATAACTCCCACTGATTTTGAAGTATGTATAACTTAAGCT
CTGAGTTGTAAAATATCAAAATCTGGAAAGACATGTCATGTCATTGTGTT
TATTGCAGATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGG
CTAACACAACTGTGGGGTACCAATATCTTCTAA

Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3516363..3518995-

>LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031100; organism=Vigna angularis; type=CDS; length=1008bp; location=Sequence derived from: Chr_9-CM003379.1:3516363..3518995- (Vigna angularis
ATGCAGCCGAGTCAAAGATATGAAAATAGTCACAGAAGTAATCTCGAAGT
GGTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATG
GTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCACAGACCTAGT
GCCGATTCTCCTAATTTAACTGCGGTTAACAACTGTCGTTATGACAGTTC
CTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGG
ATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTGGAGGTTCAGAAA
AGGAGAATCTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGA
GAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGC
CACGAGAACTGGAGAACCAAATAAACGGTCTAAAGGCTGAAGTTGAAAGT
CTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGA
GCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTT
TGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATT
ATAGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGA
TGAGGTGGAATCAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAA
GCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAG
TATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAA
CAGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACG
ATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCT
GGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTG
GTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTGTGGGGTACCAATA
TCTTCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003316	E2F_WHTH_DNA-bd_dom
IPR032198	E2F_CC-MB
IPR036388	WH-like_DNA-bd_sf
IPR037241	E2F-DP_heterodim
IPR036390	WH_DNA-bd_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0046983	protein dimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Cellular Component**
Term	Definition
GO:0005667	transcription regulator complex

Search form

LR48_mrnaVigan09g031100