Vfaba.Tiffany.R1.5g098720.1

Transcript Overview
NameVfaba.Tiffany.R1.5g098720.1
Unique NameVfaba.Tiffany.R1.5g098720.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length861
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:880377549..880378498 +Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR442Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR471Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL431Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifL221Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL353Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cctifL0492Cajanus cajan Asha genome v1.0Cajanus cajan
cctifL0646Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL282Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cctifL0691Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL433Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvtifL054Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tiftifL207Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL242Pisum sativum Cameor genome v1aPisum sativum
pstifL688Pisum sativum Cameor genome v1aPisum sativum
pvtifL653Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL658Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuR581Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhR346Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR361Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifL292Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL465Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0702Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0705Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0846Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0908Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL1153Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL1234Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvrvR561Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR606Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR641Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR665Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL182Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL285Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_28365Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.007G188400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014656626.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_18633Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_24563Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004493697.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-KK1_007166Cajanus cajan Asha genome v1.0Cajanus cajan
Psat03G0209800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg1887.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg32555.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat06G0157300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cr_07666.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat6g056680.1Pisum sativum Cameor genome v1aPisum sativum
Ca_12206Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_03763Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g061240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g050960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.5g122600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g098720Vfaba.Tiffany.R1.5g098720_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g098720.1_tif_v1-exonVfaba.Tiffany.R1.5g098720.1_tif_v1-exon-chr5_tif_v1:880377549..880377737Vicia fabaexon
Vfaba.Tiffany.R1.5g098720.1_tif_v1-exonVfaba.Tiffany.R1.5g098720.1_tif_v1-exon-chr5_tif_v1:880377827..880378498Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g098720.1_tif_v1-cdsVfaba.Tiffany.R1.5g098720.1_tif_v1-cds-chr5_tif_v1:880377549..880377737Vicia fabaCDS
Vfaba.Tiffany.R1.5g098720.1_tif_v1-cdsVfaba.Tiffany.R1.5g098720.1_tif_v1-cds-chr5_tif_v1:880377827..880378498Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g098720.1_tif_v1Vfaba.Tiffany.R1.5g098720.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.5g098720.1_tif_v1Vfaba.Tiffany.R1.5g098720.1_tif_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q84NG0|Q84NG0_VICFA (Histone H1 (Fragment) OS=Vicia faba OX=3906 GN=his1-1 PE=3 SV=1)

HSP 1 Score: 453.366 bits (1165), Expect = 3.935e-159
Identity = 273/284 (96.13%), Postives = 276/284 (97.18%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSAPKPAKKSAASKPKAKPKAKPAAKSKSKPAAKAKPAAKAKPAAKAKPAAKTKPAAKAKPAAKTKPAAKPVAKPAAKAKPAAKTKPAAKAKPAAKAKPAAKAKPAAKAARTSSRTTPGKAAAPKPAAKKAAPVKKTPVKAAAKAKTPVKKAAAKKAKK 286
            SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVAL+EKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAK+SAPKPAKKSAASKPKAKPKAKPAAKSKS      KPA KAKPAAKAKPAAKTKPAAKAKPAAKTKPAAKPVAKPAAKAKPAAKTKPAAKAKPAAKAKPAAKAKPAAKAARTSSRTTPGKAAAPKPAAKKAAPVKKTPVKAAAKAKTPVKKAAAK+ KK
Sbjct:    1 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALREKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKSSAPKPAKKSAASKPKAKPKAKPAAKSKS------KPAVKAKPAAKAKPAAKTKPAAKAKPAAKTKPAAKPVAKPAAKAKPAAKTKPAAKAKPAAKAKPAAKAKPAAKAARTSSRTTPGKAAAPKPAAKKAAPVKKTPVKAAAKAKTPVKKAAAKRGKK 278
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9AT24|Q9AT24_PEA (Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=His1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.338e-67
Identity = 109/122 (89.34%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDTLPPVVNESEEP AKPKKAPKE KAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ++KLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKETKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q84NF8|Q84NF8_9FABA (Histone H1 (Fragment) OS=Lens nigricans OX=41258 GN=his1-1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.149e-57
Identity = 115/131 (87.79%), Postives = 124/131 (94.66%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSAPKP 133
            SEEPTTVAVEQPIVEE AAVDTLPPVVNESEEP AKPKKA KEPKAKKAPAKP+THPTYEEMVK+AIV+LKEK GSSQ+AIAKFIEEK K LPSNFKK+LLVQ++KLVAS KLVKVKASYK+PAK+SAPKP
Sbjct:    1 SEEPTTVAVEQPIVEEQAAVDTLPPVVNESEEPTAKPKKAAKEPKAKKAPAKPRTHPTYEEMVKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKLPAKSSAPKP 131
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9SXQ8|Q9SXQ8_PEA (Ribosome-sedimenting protein OS=Pisum sativum OX=3888 GN=RSP PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.143e-56
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 0 
Query:    1 MASEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            MASEEPTTVAVEQPIVEEP AVDT PPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ+RKLVAS KLVKVKASYK+
Sbjct:    1 MASEEPTTVAVEQPIVEEPEAVDTFPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIRKLVASGKLVKVKASYKL 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9ZR20|Q9ZR20_PEA (Ribosome-sedimenting protein (Fragment) OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.520e-54
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDT PPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ+RKLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTFPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIRKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q8LKH9|Q8LKH9_9FABA (Histone H1 (Fragment) OS=Pisum fulvum OX=51020 GN=His1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.662e-54
Identity = 110/122 (90.16%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDTLPPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ++KLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q8LKI0|Q8LKI0_9FABA (Histone H1 (Fragment) OS=Pisum abyssinicum OX=198035 GN=His1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.662e-54
Identity = 110/122 (90.16%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDTLPPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ++KLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9AT25|Q9AT25_PEA (Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=His1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.795e-54
Identity = 110/122 (90.16%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDTLPPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ++KLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9AT23|Q9AT23_PEA (Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=His1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.602e-53
Identity = 109/122 (89.34%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            SEEPTTVAVEQPIVEEP AVDTLPPVVNESEEP AKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKE+ GSSQ+AIAKFIEEKH  LPSNFKK+LLVQ++KLVAS KLVKVKASYK+
Sbjct:    1 SEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHTQLPSNFKKLLLVQIKKLVASGKLVKVKASYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Match: tr|Q9AT22|Q9AT22_LATSA (Histone H1 (Fragment) OS=Lathyrus sativus OX=3860 GN=His1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.512e-52
Identity = 115/127 (90.55%), Postives = 125/127 (98.43%), Query Frame = 0 
Query:    3 SEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTS 129
            SEEPTTVAVEQPIVEEPAAVDTLPPVVNE+EEPAAKPKKAPKEPKAKKAPAKP+THPTYEEMVKEAIVALKEK+GSSQ+AIAKFIEEKHK LPSNFKK+LLVQ++KLVAS KLVKVKASYK+PAK++
Sbjct:    1 SEEPTTVAVEQPIVEEPAAVDTLPPVVNEAEEPAAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKEKSGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKLPAKST 127
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P26569|H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.426e-34
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 0 
Query:   51 APAKPKT---HPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSA--PKPA 134
            AP K KT   HPTYEEM+K+AIV LKE+TGSSQ+AI KFIEEKHK+LP  F+K+LLV L++LVAS+KLVKVKAS+KIP+  SA  PKPA
Sbjct:   52 APTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPA 140
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P37218|H1_SOLLC (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-24
Identity = 78/132 (59.09%), Postives = 91/132 (68.94%), Query Frame = 0 
Query:    1 MASEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKA------KKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPA 126
            MA+EEP  V     +VEE AA    P  V +   P AK  KA KE KA      +K  A P THP Y EM+K+AIV LKE+TGSSQHAI KFIEEK K+LPSNFKK+LL QL+K VAS+KLVKVK SYK+P+
Sbjct:    1 MATEEPVIV---NEVVEEQAA----PETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATP-THPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPS 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P27806|H1_WHEAT (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.741e-24
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0 
Query:   51 APAKPKT---HPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHK-NLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
             P KP+    HP+Y EMV EAI ALKE++GSS  AI KFIE+KHK +LP+NF+KILL Q++KLVA+ KL KVK SYK+
Sbjct:   45 GPKKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P40267|H1_SOLPN (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.678e-22
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:   16 VEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKK-APAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKN-LPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            VE P  V   P   ++ +E A    K P+ PK KK   AK  THP Y +M+KEA++AL EK GSS +A+AK++E+KHK+ LP+NF+KIL +QL+   A  KL+K+KASYK+
Sbjct:    7 VENPTVVQR-PTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M5W4|H1_EUPES (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.348e-19
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 0 
Query:   57 THPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYK 123
            +HP++ EM+ +AI  LKE+TGSSQ+AI KF+E+KHK LPSNF+K+LL  L+KLVAS KLVKVK S+K
Sbjct:   50 SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFK 116
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P54671|H1_DICDI (Histone H1 OS=Dictyostelium discoideum OX=44689 GN=H1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.841e-14
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:   41 KAPKEPKAKKAPAKPK---THPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKI 124
            KAP  P  K A  K K    HPTY+ M+  AI   K++TGSSQ AI K+IE  +   P  FK  L + L++LVA   L  VKASYK+
Sbjct:    4 KAPTTPTKKAAATKSKPKPNHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKL 90
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q08864|H11_VOLCA (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.546e-14
Identity = 50/102 (49.02%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   57 THPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKH-KNLPS-NFKKILLVQLRKLVASDKLVKVKASYKIP------AKTSAPKPAKKSAASKPKAKPKAKP 150
            THP Y EMVK+AI  LKE+ GSS  A+ KFIE K+ K++   NF K L   ++  V   KLVKVK S+K+       AK S PK AK    +KPK K +AKP
Sbjct:   58 THPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKAKKSTPKKAKADGEAKPK-KSEAKP 158
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BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|P23444|H1_MAIZE (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.287e-13
Identity = 59/131 (45.04%), Postives = 70/131 (53.44%), Query Frame = 0 
Query:   57 THPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHK-NLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSAPKPAKKSAASKPKAKPKAKPAAKSKSKPAAKAKPAAKAKPAAKAKPAAKTKPAAKA 186
            TH  Y EMV EAI +LKE+TGSS +AIAKF+E+KHK  LP NF+K+L VQL+KLVA  KL KVK SYK+ + T      K +                             KA    KAK  AK KPA K 
Sbjct:   49 THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNPKPKAAPKK------------------PKTGAKKPKAAAKPKAKTPAKAKPATKP 161
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8W119|SMH4_MAIZE (Single myb histone 4 OS=Zea mays OX=4577 GN=SMH4 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.714e-10
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 0 
Query:   47 KAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSAPKPAKKSAASKPKAKPKAKPAAKSK 155
             A+K P   KT P Y  M+ EA++ L E  GS   AI  FIE+++   P+ F++ L  +LR+L  S+K+ K+  SY++P   +   PA  + AS PK K  +KP+  SK
Sbjct:  103 DAEKKPQDGKTLPKYGAMIMEALLELNEPNGSDIAAIFGFIEQRYAVQPT-FRRFLASKLRRLADSNKIEKIDKSYRLPDSLATRTPAPMN-ASAPKQKDPSKPSKVSK 209
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Match: AT2G30620.2 (| winged-helix DNA-binding transcription factor family protein | Chr2:13045360-13046267 FORWARD LENGTH=202 | 201606)

HSP 1 Score: 127.102 bits (318), Expect = 1.678e-35
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 0 
Query:   51 APAKPKT---HPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSA--PKPA 134
            AP K KT   HPTYEEM+K+AIV LKE+TGSSQ+AI KFIEEKHK+LP  F+K+LLV L++LVAS+KLVKVKAS+KIP+  SA  PKPA
Sbjct:   52 APTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPA 140
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Match: AT2G30620.1 (| winged-helix DNA-binding transcription factor family protein | Chr2:13045360-13046267 FORWARD LENGTH=273 | 201606)

HSP 1 Score: 127.872 bits (320), Expect = 5.552e-35
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 0 
Query:   51 APAKPKT---HPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSA--PKPA 134
            AP K KT   HPTYEEM+K+AIV LKE+TGSSQ+AI KFIEEKHK+LP  F+K+LLV L++LVAS+KLVKVKAS+KIP+  SA  PKPA
Sbjct:   52 APTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPA 140
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Match: AT2G18050.1 (| histone H1-3 | Chr2:7846095-7846670 FORWARD LENGTH=167 | 201606)

HSP 1 Score: 85.8853 bits (211), Expect = 2.645e-20
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   36 AAKPKKAPKEPKAKKAPAKPKT--HPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKN-LPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKT 128
             A+ K   K P AKK P KPKT  HP Y +M+KEA++ LKEK GSS +AIAK IEEKHK+ LP +F+K L +QL+  VA  KLVK++ASYK+   T
Sbjct:    1 MAEDKILKKTPAAKK-PRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTT 95
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Match: AT2G18050.2 (| histone H1-3 | Chr2:7846254-7846670 FORWARD LENGTH=138 | 201606)

HSP 1 Score: 73.9442 bits (180), Expect = 4.457e-16
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0 
Query:   64 MVKEAIVALKEKTGSSQHAIAKFIEEKHKN-LPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKT 128
            M+KEA++ LKEK GSS +AIAK IEEKHK+ LP +F+K L +QL+  VA  KLVK++ASYK+   T
Sbjct:    1 MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTT 66
[Close]
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Match: AT1G72740.2 (| Homeodomain-like/winged-helix DNA-binding family protein | Chr1:27380499-27382687 REVERSE LENGTH=281 | 201606)

HSP 1 Score: 62.003 bits (149), Expect = 6.245e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:   59 PTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIP----AKTSAPKP 133
            P Y+ ++ EA+ AL +  GS   +I  FIE +H+ +P NF++IL  +LR+L A  KL K++  YKIP     K   PKP
Sbjct:  121 PRYDGVIFEALSALADGNGSDVSSIYHFIEPRHE-VPPNFRRILSTRLRRLAAQSKLEKIQNFYKIPDPSGTKIGVPKP 198
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|Q84NG0|Q84NG0_VICFA3.935e-15996.13Histone H1 (Fragment) OS=Vicia faba OX=3906 GN=his... [more]
tr|Q9AT24|Q9AT24_PEA4.338e-6789.34Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=... [more]
tr|Q84NF8|Q84NF8_9FABA5.149e-5787.79Histone H1 (Fragment) OS=Lens nigricans OX=41258 G... [more]
tr|Q9SXQ8|Q9SXQ8_PEA3.143e-5690.32Ribosome-sedimenting protein OS=Pisum sativum OX=3... [more]
tr|Q9ZR20|Q9ZR20_PEA1.520e-5490.16Ribosome-sedimenting protein (Fragment) OS=Pisum s... [more]
tr|Q8LKH9|Q8LKH9_9FABA4.662e-5490.16Histone H1 (Fragment) OS=Pisum fulvum OX=51020 GN=... [more]
tr|Q8LKI0|Q8LKI0_9FABA4.662e-5490.16Histone H1 (Fragment) OS=Pisum abyssinicum OX=1980... [more]
tr|Q9AT25|Q9AT25_PEA4.795e-5490.16Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=... [more]
tr|Q9AT23|Q9AT23_PEA2.602e-5389.34Histone H1 (Fragment) OS=Pisum sativum OX=3888 GN=... [more]
tr|Q9AT22|Q9AT22_LATSA1.512e-5290.55Histone H1 (Fragment) OS=Lathyrus sativus OX=3860 ... [more]
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BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 9
Match NameE-valueIdentityDescription
sp|P26569|H12_ARATH5.426e-3470.79Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|P37218|H1_SOLLC1.104e-2459.09Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV... [more]
sp|P27806|H1_WHEAT3.741e-2462.82Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2[more]
sp|P40267|H1_SOLPN5.678e-2249.55Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1[more]
sp|Q9M5W4|H1_EUPES2.348e-1965.67Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
sp|P54671|H1_DICDI4.841e-1447.13Histone H1 OS=Dictyostelium discoideum OX=44689 GN... [more]
sp|Q08864|H11_VOLCA5.546e-1449.02Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=... [more]
sp|P23444|H1_MAIZE2.287e-1345.04Histone H1 OS=Zea mays OX=4577 PE=2 SV=2[more]
sp|Q8W119|SMH4_MAIZE3.714e-1038.53Single myb histone 4 OS=Zea mays OX=4577 GN=SMH4 P... [more]
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BLAST of Vfaba.Tiffany.R1.5g098720.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G30620.21.678e-3570.79| winged-helix DNA-binding transcription factor fa... [more]
AT2G30620.15.552e-3570.79| winged-helix DNA-binding transcription factor fa... [more]
AT2G18050.12.645e-2056.25| histone H1-3 | Chr2:7846095-7846670 FORWARD LENG... [more]
AT2G18050.24.457e-1659.09| histone H1-3 | Chr2:7846254-7846670 FORWARD LENG... [more]
AT1G72740.26.245e-1141.77| Homeodomain-like/winged-helix DNA-binding family... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005819Linker histone H1/H5PRINTSPR00624HISTONEH5coord: 198..217
score: 32.78
coord: 145..159
score: 29.63
coord: 71..88
score: 43.21
coord: 44..65
score: 43.43
coord: 176..193
score: 26.54
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 53..138
e-value: 4.2E-19
score: 70.4
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 58..119
e-value: 8.9E-18
score: 64.4
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 57..126
score: 30.433039
IPR005818Linker histone H1/H5, domain H15CDDcd00073H15coord: 57..127
e-value: 4.08301E-25
score: 94.2251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availablePANTHERPTHR11467HISTONE H1coord: 34..275
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 54..136

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.5g098720.1_tif_v1 ID=Vfaba.Tiffany.R1.5g098720.1_tif_v1; Name=Vfaba.Tiffany.R1.5g098720.1; organism=Vicia faba; type=mRNA; length=861bp
ATGGCGTCTGAAGAGCCTACCACCGTCGCCGTTGAGCAGCCCATCGTGGA
GGAGCCGGCCGCCGTCGACACTCTCCCACCCGTTGTCAATGAGTCCGAAG
AGCCCGCTGCTAAGCCCAAGAAGGCTCCCAAAGAGCCCAAGGCCAAGAAA
GCTCCTGCCAAACCCAAAACTCACCCCACCTATGAAGAGATGGTGAAGGA
AGCGATTGTTGCTTTGAAAGAGAAGACCGGTTCGAGCCAGCACGCGATTG
CGAAGTTCATTGAAGAGAAGCACAAGAACCTTCCCTCGAACTTCAAGAAG
ATTTTGCTGGTTCAGCTTAGGAAGCTTGTTGCTTCTGATAAGCTTGTTAA
GGTGAAAGCTTCCTACAAGATACCGGCGAAGACCTCTGCTCCAAAGCCCG
CCAAGAAGTCTGCTGCTTCCAAGCCCAAAGCCAAGCCCAAGGCTAAACCA
GCTGCCAAGTCAAAGTCCAAGCCTGCTGCAAAAGCCAAGCCTGCTGCAAA
GGCCAAGCCAGCTGCAAAAGCCAAGCCTGCTGCGAAAACCAAGCCAGCTG
CTAAGGCAAAGCCTGCTGCCAAAACGAAACCTGCTGCCAAGCCTGTAGCC
AAGCCAGCTGCAAAGGCTAAACCAGCTGCCAAGACCAAGCCAGCTGCAAA
GGCTAAACCAGCTGCTAAGGCCAAGCCGGCTGCTAAGGCTAAGCCAGCTG
CAAAGGCTGCAAGGACCTCGTCGAGGACTACACCAGGGAAAGCTGCTGCA
CCTAAACCAGCGGCGAAGAAGGCTGCACCTGTGAAGAAGACTCCAGTGAA
AGCGGCGGCGAAGGCGAAGACTCCTGTGAAGAAGGCAGCGGCTAAGAAAG
CCAAGAAGTGA
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protein sequence of Vfaba.Tiffany.R1.5g098720.1_tif_v1

>Vfaba.Tiffany.R1.5g098720.1_tif_v1 ID=Vfaba.Tiffany.R1.5g098720.1_tif_v1; Name=Vfaba.Tiffany.R1.5g098720.1_tif_v1; organism=Vicia faba; type=polypeptide; length=286bp
MASEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKK
APAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKK
ILLVQLRKLVASDKLVKVKASYKIPAKTSAPKPAKKSAASKPKAKPKAKP
AAKSKSKPAAKAKPAAKAKPAAKAKPAAKTKPAAKAKPAAKTKPAAKPVA
KPAAKAKPAAKTKPAAKAKPAAKAKPAAKAKPAAKAARTSSRTTPGKAAA
PKPAAKKAAPVKKTPVKAAAKAKTPVKKAAAKKAKK
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mRNA from alignment at chr5:880377549..880378498+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.5g098720.1_tif_v1 ID=Vfaba.Tiffany.R1.5g098720.1_tif_v1; Name=Vfaba.Tiffany.R1.5g098720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:880377549..880378498+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005819H1/H5
IPR036388WH-like_DNA-bd_sf
IPR005818Histone_H1/H5_H15
IPR036390WH_DNA-bd_sf
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0030527structural constituent of chromatin
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome