evm.model.Chr09.1261

Transcript Overview
Nameevm.model.Chr09.1261
Unique Nameevm.model.Chr09.1261_hau_v1
TypemRNA
OrganismVigna unguiculata subsp. sesquipedalis ()
Sequence length309
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:20748744..20751623 -Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvuaL0110Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0305Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0353Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0461Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0728Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0736Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuaL074Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL195Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL687Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caivuaL466Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuaL574Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuaL0213Cajanus cajan Asha genome v1.0Cajanus cajan
cavuaL330Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL413Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL420Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL660Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuaL1097Cajanus cajan Asha genome v1.0Cajanus cajan
crvuaL446Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuaL544Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuaL447Pisum sativum Cameor genome v1aPisum sativum
psvuaL460Pisum sativum Cameor genome v1aPisum sativum
psvuaL480Pisum sativum Cameor genome v1aPisum sativum
psvuaL599Pisum sativum Cameor genome v1aPisum sativum
pvvuaL059Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL093Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL250Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL283Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuaL400Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuaL481Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL705Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vfhvuaL278Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL398Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuaL117Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL371Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL424Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL534Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vuavuaL189Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuavuaL255Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaL120Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaL369Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuaL523Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuazwsR572Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vssvuaL671Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuazwsR605Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR606Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR630Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuvuaL399Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuaL463Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaL299Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL377Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL606Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g250900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan09g029200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.TU.Chr09.1261evm.TU.Chr09.1261_hau_v1Vigna unguiculata subsp. sesquipedalisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr09.1261.exon2evm.model.Chr09.1261.exon2_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr09.1261.exon1evm.model.Chr09.1261.exon1_hau_v1Vigna unguiculata subsp. sesquipedalisexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr09.1261.utr3p1evm.model.Chr09.1261.utr3p1_hau_v1Vigna unguiculata subsp. sesquipedalisthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.evm.model.Chr09.1261cds.evm.model.Chr09.1261_hau_v1Vigna unguiculata subsp. sesquipedalisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr09.1261.utr5p2evm.model.Chr09.1261.utr5p2_hau_v1Vigna unguiculata subsp. sesquipedalisfive_prime_UTR
evm.model.Chr09.1261.utr5p1evm.model.Chr09.1261.utr5p1_hau_v1Vigna unguiculata subsp. sesquipedalisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr09.1261_hau_v1evm.model.Chr09.1261_hau_v1Vigna unguiculata subsp. sesquipedalispolypeptide
evm.model.Chr09.1261_hau_v1evm.model.Chr09.1261_hau_v1-proteinVigna unguiculata subsp. sesquipedalispolypeptide


Homology
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|P26861|RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.692e-48
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N+ICCTG+D Q+V QFAA V++CKPPEVYKGKGI Y +E+I KKQGKK
Sbjct:    1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q38US6|RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.958e-26
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  I  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE +++K+GK  K
Sbjct:   82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK 177
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|P82193|RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.609e-26
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  V QFAAT+R+ +PPE YKGKG+ YVDEV+++K+GK  K
Sbjct:  123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGK 218
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|A7HM37|RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.231e-25
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKS 101
            F + L+IVGVGY  RA+  G  L + LGY+H+VE  VP  V+V     N I  +GIDKQRV Q AA +R  + P  Y GKGI YVDEV+K K+GKK+
Sbjct:   90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVLKLKEGKKA 184
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q1GPB4|RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.100e-25
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I GVGY  RA A G+ L L+LGYSH+V+ AVP  + +    N  I  +GIDKQ+V Q AA +R  + PE YKGKGI Y  E I +K+GKK
Sbjct:   83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKK 176
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|B2IK77|RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.613e-25
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   +  TGIDKQRV Q AA +R  +PPE YKGKG+ Y  E I +K+GKK
Sbjct:   83 FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKK 176
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|B7IHW1|RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=rplF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.468e-24
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKS 101
            F + L+IVG+GY  RA+  G+ L + LGY+H VE+ +P  V+V     N I  +GIDKQRV Q AA +R  + P VY GKGI YV EV++ K+GKK+
Sbjct:   90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVVRLKEGKKA 184
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|O23049|RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-24
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L +VGVGY  RA   G+ L L LG+SH V++ +P +++V   +N  I  +G DK  + QFAATVR  +PPE YKGKG+ Y DE++++K+GK  K
Sbjct:  126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q2N9C6|RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rplF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.557e-24
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I GVGY  RA+A G+ L L+LGYSH+V++AVP  + V       +  +GIDKQ V Q AA +R  + PE YKGKGI Y  E + +K+GKK
Sbjct:   83 FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKK 176
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q3SSV1|RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.073e-24
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I+GVGY  RA   G+ L L LGYSH+V  AVP  + +   K   I  TG D QRV Q AA +R  +PPE YKGKG+ Y DE I +K+GKK
Sbjct:   83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKK 176
[Close]
BLAST of evm.model.Chr09.1261 vs. Araport11
Match: AT2G18400.1 (| ribosomal protein L6 family protein | Chr2:7989665-7989973 REVERSE LENGTH=102 | 201606)

HSP 1 Score: 182.57 bits (462), Expect = 2.711e-61
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93
            MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVELAVPPAVRVFCFKNNV+CCTGIDKQRVHQFAATVR+CKPPE YKGKGIMY DEV+
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93
[Close]
BLAST of evm.model.Chr09.1261 vs. Araport11
Match: AT1G05190.1 (| Ribosomal protein L6 family | Chr1:1502515-1503738 REVERSE LENGTH=223 | 201606)

HSP 1 Score: 95.1301 bits (235), Expect = 1.943e-25
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L +VGVGY  RA   G+ L L LG+SH V++ +P +++V   +N  I  +G DK  + QFAATVR  +PPE YKGKG+ Y DE++++K+GK  K
Sbjct:  126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N4G1|A0A4D6N4G1_VIGUN (Large subunit ribosomal protein L6 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g2812 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|I1LCL9|I1LCL9_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100780944 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V9G3|A0A0L9V9G3_PHAAN (Ribosomal_L6 domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g029200 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A151RWF8|A0A151RWF8_CAJCA (Ribosomal_L6 domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_023095 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SP24|A0A0S3SP24_PHAAN (Ribosomal_L6 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G123300 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A445IQ31|A0A445IQ31_GLYSO (60S ribosomal protein L6, mitochondrial (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_027564 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.668e-67
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:   53 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 154
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BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|V7BEI5|V7BEI5_PHAVU (Ribosomal_L6 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G139500g PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.419e-67
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFA+TVRTCKPPEVYKGKGIMYVDEV+KKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFASTVRTCKPPEVYKGKGIMYVDEVVKKKQGKKSK 102
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BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|I1KDT7|I1KDT7_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100527168 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.419e-67
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVEL VPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
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BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|C6T6I8|C6T6I8_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100811303 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.053e-67
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSH+VELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKG+MYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVIKKKQGKKSK 102
[Close]
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|C6T1H6|C6T1H6_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.741e-67
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFL+IVGVGYKARAEAAGRLLYLKLGYSH+VELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKG+MYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLRIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVIKKKQGKKSK 102
The following BLAST results are available for this feature:
BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|P26861|RM06_MARPO4.692e-4870.0060S ribosomal protein L6, mitochondrial OS=Marchan... [more]
sp|Q38US6|RL6_LACSS1.958e-2648.9850S ribosomal protein L6 OS=Lactobacillus sakei su... [more]
sp|P82193|RK6_SPIOL3.609e-2648.9850S ribosomal protein L6, chloroplastic OS=Spinaci... [more]
sp|A7HM37|RL6_FERNB3.231e-2552.5850S ribosomal protein L6 OS=Fervidobacterium nodos... [more]
sp|Q1GPB4|RL6_SPHAL5.100e-2551.0450S ribosomal protein L6 OS=Sphingopyxis alaskensi... [more]
sp|B2IK77|RL6_BEII96.613e-2548.9650S ribosomal protein L6 OS=Beijerinckia indica su... [more]
sp|B7IHW1|RL6_THEAB1.468e-2449.4850S ribosomal protein L6 OS=Thermosipho africanus ... [more]
sp|O23049|RK6_ARATH1.899e-2446.9450S ribosomal protein L6, chloroplastic OS=Arabido... [more]
sp|Q2N9C6|RL6_ERYLH2.557e-2448.9650S ribosomal protein L6 OS=Erythrobacter litorali... [more]
sp|Q3SSV1|RL6_NITWN3.073e-2451.0450S ribosomal protein L6 OS=Nitrobacter winogradsk... [more]
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BLAST of evm.model.Chr09.1261 vs. Araport11
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G18400.12.711e-6192.47| ribosomal protein L6 family protein | Chr2:79896... [more]
AT1G05190.11.943e-2546.94| Ribosomal protein L6 family | Chr1:1502515-15037... [more]
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BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6N4G1|A0A4D6N4G1_VIGUN6.478e-68100.00Large subunit ribosomal protein L6 OS=Vigna unguic... [more]
tr|I1LCL9|I1LCL9_SOYBN6.478e-68100.00Ribosomal_L6 domain-containing protein OS=Glycine ... [more]
tr|A0A0L9V9G3|A0A0L9V9G3_PHAAN6.478e-68100.00Ribosomal_L6 domain-containing protein OS=Phaseolu... [more]
tr|A0A151RWF8|A0A151RWF8_CAJCA6.478e-68100.00Ribosomal_L6 domain-containing protein OS=Cajanus ... [more]
tr|A0A0S3SP24|A0A0S3SP24_PHAAN6.478e-68100.00Ribosomal_L6 domain-containing protein OS=Vigna an... [more]
tr|A0A445IQ31|A0A445IQ31_GLYSO1.668e-67100.0060S ribosomal protein L6, mitochondrial (Fragment)... [more]
tr|V7BEI5|V7BEI5_PHAVU2.419e-6798.04Ribosomal_L6 domain-containing protein OS=Phaseolu... [more]
tr|I1KDT7|I1KDT7_SOYBN2.419e-6799.02Ribosomal_L6 domain-containing protein OS=Glycine ... [more]
tr|C6T6I8|C6T6I8_SOYBN4.053e-6798.04Ribosomal_L6 domain-containing protein OS=Glycine ... [more]
tr|C6T1H6|C6T1H6_SOYBN8.741e-6797.06Ribosomal_L6 domain-containing protein OS=Glycine ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0
Date Performed: 2023-06-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 23..39
score: 44.97
coord: 65..86
score: 55.87
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 5..102
e-value: 2.8E-34
score: 119.1
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 5..100
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 12..88
e-value: 1.1E-17
score: 64.4
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..100

Sequences
The following sequences are available for this feature:

mRNA sequence

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=309bp
ATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGTCCGAGTTTTCTGCTTC
AAGAACAATGTAATTTGTTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG
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protein sequence of evm.model.Chr09.1261_hau_v1

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=102bp
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCF
KNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK
SK
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mRNA from alignment at Chr09:20748744..20751623-

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=2880bp; location=Sequence derived from: Chr09:20748744..20751623- (Vigna unguiculata subsp. sesquipedalis
ATTTACAGGAAGCCAAACAGTTCAGGGAGTGCTCTCCCTTTCTCCACCCA
ACCTCGCGCAGCTTCTACTCCCAACCCGCCGCAGACGACGGCGAGGGCGG
GCGACGACGACCGAGGACGACTGTCTGCGACGGTGAACGGTTCAAAAGCA
GGAACGAACCAAACCAGTAAGAAGAACAAGAGATCCTAATCCCTAATTAG
TGAGTTTTCTTCACTCTTCCACCTAATTTTCTGCAGCTGAGTAAAAAAAT
AATTTAGATCTTCCAGCATGAATTTCTCACATCCTTCAATGAAATCTGCA
CCATTCAGTGAGCATTTGCAGTTTATCAATTATTCATGTATGATAGACTG
AAGCTTATTTGTGATATTCACAAGGATGCTTTTTTACTGTGTATTAACTG
GAAAAAACTAAAAAAATGTTTAGCACACCGAAATTTACATCCAAATCAAC
TTATTACAAAGAAAATTTCCTAAGTTCATGATATACACAATGGACTTTGA
ACTTCAATTTGTTCCAGACTCTGGGTTCACCAATGGTTGAGCTGGAAGAA
CATTTGATCTTTGCTGGACCAGTTCATTCACAGTTGAAGCTAGCTGCCCT
ATTTGAGTCTTCAAATCCTGGATAGTTACTTCAATGGAGGGATCAATTCT
GTTGTTTTGTTGTTGTGCCACATATCATTGTGGATTGTTGATGTTGGTTA
GTAGGGCCTTGAATTGCTCTCAAAAGCTGAGTATTAGGTGTAAGCTTAGG
TACGGCTATGGTATTCTGGAAATACTGTGCGTGTGGTAGAGATGGATCTG
CTGGAGTGTAGTTTGGGTTAGGGATCCATCTCGGGTTGCCTTGCTGCTGA
TTCCCTGCTGCTTCTGAAAAATTCCAGCCACTAGTTGTGCATCCAAATTG
GCTACATCTTGAAGCTGTGGGCATTGGTCCGTGAAATGGTCACTTGCAGC
ACATAATCCGCAATGTTTAGCTACAACATTAACCCACTGATTCAAGGCTA
TCTTCCTCATCACTGTGATCAATTCCAAAATTTTGTTGCCTATCTTCATA
TTATTTTCAGTCAACAATTTTGTCCTTGAATAACATTTACTTCAAGTTCA
TGAACTGCCCTGCTGGTACTTCCCCTAATGCCGAACTACTGGCTGTTTTC
AGCTATGTTAGAAATCAAGTAACGGCCTGCAGCTGGTGTCTTATCCACAA
ACACCCCTTCACTAGCAGCATCAAGCAAATTCCTGTCAGCCATTGTCAAT
CCCACATAAAAGTATTGTAGTAGCAGTTGTTCACTAATTTGATGATTAGG
ACAGGTTGCACACAACTTGTTAAAACGTTGCCAATACTCCGGGAGGCTCT
CTCCTTGTGATTGCCTAATTCCACTGATTTCCTTTCTAACTGATGTTGTC
CTTGATGCTAGAAAGAACTTCTCCAGAAATTTTCTTCCCATCCAGCTATC
GGTTTTGGTTGAGAGAACAACCATGCTTTGGCTGCATCACATAAAGAGAA
GGGAAATGCCTTCATTTGAACCACTTCTTCAGAAATGTTGGCCGGTTTCA
TGGTTGAGCATACAATGATGAACTTCAAGTGTTTATGAGGATCCTCTCCA
ATCATTCCATGAAACCAATGATAAGGGACTTATCACTCCCATCAAGTAAC
ACCACCAAATGAGCATTCTTTGCCAATGAAACCAACATTAGTAAAACTCA
TGTGCGCGTTTCATTTTCAGTTGGAAGGAACATTTCATATTTCAATTATT
ATTCATGCATTTGGTATGCAATTTTTTCAATGATACATCTGCTCCACTCT
GTATAGTAATTTACACTTGCTCCTGCAGAATGCATACTATGATTTCGATA
AGTGTTACTTGTCTTTCATCTTTTGTTTGCAATGGCTTAATAGTAAATGA
TAATTAATATATTTGTGTTTTAATGAGTATGATATTACATATGCTTCCCC
TGTATTTTCTTTCCTGTTTTATTTAATTGTCAAAACCTTTAGTTTTTTTA
TAATGGACTTTTGTTTTTGGGTTCGAGAAATGTTGAGGTGGGTAGTTTGA
GCATTGCTCCCACCAATTCATTTTGGGTATAATTTATGTCCGAGGAATGA
TTGAAGTCTTGTAAGAATATCTAGTGATTTTGTGATTTTGTGGGAGGAAA
AGAGTTATTTAATATTTTGCTGGGTATAGTATTTGTCTTAATTACCTATT
TCCAGAAATATCATTCTGAAATATCTTGTTCCTGAGTACGTAACATTCTT
CCTCAAAACAAATGCAACAATTTTCGTTCCCTGACAATTTTAGGAAACTT
ATTTGCTTAGGAATTGATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTG
TGGGTGTTGGATACAAAGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTAT
CTCAAATTGGGGTACAGCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGT
CCGAGTTTTCTGCTTCAAGAACAATGTAATTTGTTGTACAGGAATTGACA
AACAAAGAGTGCACCAGTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCT
GAAGTTTACAAAGGCAAGGGTATAATGTATGTTGATGAAGTTATCAAGAA
AAAACAAGGAAAGAAGTCTAAATAGTCATATAATCTTTAGGTGATTTGGT
GAAGTCTAGACTGAGATGTACATTGGCTACACTCTGTCTGCACAAATCAC
TATGATTAACTCTAGCCTTCAAACAATTTTTGTGTTGGAATCCTTGAACA
TTATGGTAATAATTTATTGCTTTGAAATAACTATAATTTCTTGTTTCAGT
AGGATTGATATGTACCTTTAGAGTTTATCTTACTTTAAATATAATATTCT
TATGAAAGGCTCCTATTCTTTTCGTTCCTT
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Coding sequence (CDS) from alignment at Chr09:20748744..20751623-

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=309bp; location=Sequence derived from: Chr09:20748744..20751623- (Vigna unguiculata subsp. sesquipedalis
ATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGTCCGAGTTTTCTGCTTC
AAGAACAATGTAATTTGTTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_uL6_bac-type
IPR036789Ribosomal_uL6-like_a/b-dom_sf
IPR020040Ribosomal_uL6_a/b-dom
IPR000702Ribosomal_uL6-like
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation