evm.model.Chr09.1261

Transcript Overview


Name	evm.model.Chr09.1261
Unique Name	evm.model.Chr09.1261_hau_v1
Type	mRNA
Organism	Vigna unguiculata subsp. sesquipedalis ()
Sequence length	309

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr09	chromosome	Chr09:20748744..20751623 -	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	2023-06-12
InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	2023-06-13
Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot	2023-06-13
Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11	2023-06-13
Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL	2023-06-13

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
anvuaL0110	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuaL0305	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuaL0353	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuaL0461	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuaL0728	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuaL0736	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuaL074	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuaL195	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuaL687	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
caivuaL466	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caivuaL574	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ccvuaL0213	Cajanus cajan Asha genome v1.0	Cajanus cajan
cavuaL330	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuaL413	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuaL420	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuaL660	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuaL1097	Cajanus cajan Asha genome v1.0	Cajanus cajan
crvuaL446	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvuaL544	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
psvuaL447	Pisum sativum Cameor genome v1a	Pisum sativum
psvuaL460	Pisum sativum Cameor genome v1a	Pisum sativum
psvuaL480	Pisum sativum Cameor genome v1a	Pisum sativum
psvuaL599	Pisum sativum Cameor genome v1a	Pisum sativum
pvvuaL059	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvuaL093	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pvvuaL250	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvuaL283	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvuaL400	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvuaL481	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pvvuaL705	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
vfhvuaL278	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvuaL398	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvuaL481	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuaL117	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuaL371	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuaL424	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuaL534	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vuavuaL189	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuavuaL255	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaL120	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vssvuaL369	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuaL523	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuazwsR572	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vssvuaL671	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuazwsR605	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuazwsR606	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuazwsR630	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuvuaL399	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vuvuaL463	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvuaL299	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvuaL377	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvuaL606	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Vigun09g250900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
LR48_mrnaVigan09g029200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.TU.Chr09.1261	evm.TU.Chr09.1261_hau_v1	Vigna unguiculata subsp. sesquipedalis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.Chr09.1261.exon2	evm.model.Chr09.1261.exon2_hau_v1	Vigna unguiculata subsp. sesquipedalis	exon
evm.model.Chr09.1261.exon1	evm.model.Chr09.1261.exon1_hau_v1	Vigna unguiculata subsp. sesquipedalis	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.Chr09.1261.utr3p1	evm.model.Chr09.1261.utr3p1_hau_v1	Vigna unguiculata subsp. sesquipedalis	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.evm.model.Chr09.1261	cds.evm.model.Chr09.1261_hau_v1	Vigna unguiculata subsp. sesquipedalis	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.Chr09.1261.utr5p2	evm.model.Chr09.1261.utr5p2_hau_v1	Vigna unguiculata subsp. sesquipedalis	five_prime_UTR
evm.model.Chr09.1261.utr5p1	evm.model.Chr09.1261.utr5p1_hau_v1	Vigna unguiculata subsp. sesquipedalis	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.Chr09.1261_hau_v1	evm.model.Chr09.1261_hau_v1	Vigna unguiculata subsp. sesquipedalis	polypeptide
evm.model.Chr09.1261_hau_v1	evm.model.Chr09.1261_hau_v1-protein	Vigna unguiculata subsp. sesquipedalis	polypeptide

Homology

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|P26861|RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.692e-48
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N+ICCTG+D Q+V QFAA V++CKPPEVYKGKGI Y +E+I KKQGKK
Sbjct:    1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q38US6|RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.958e-26
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  I  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE +++K+GK  K
Sbjct:   82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK 177

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|P82193|RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.609e-26
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  V QFAAT+R+ +PPE YKGKG+ YVDEV+++K+GK  K
Sbjct:  123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGK 218

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|A7HM37|RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.231e-25
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKS 101
            F + L+IVGVGY  RA+  G  L + LGY+H+VE  VP  V+V     N I  +GIDKQRV Q AA +R  + P  Y GKGI YVDEV+K K+GKK+
Sbjct:   90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVLKLKEGKKA 184

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q1GPB4|RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.100e-25
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I GVGY  RA A G+ L L+LGYSH+V+ AVP  + +    N  I  +GIDKQ+V Q AA +R  + PE YKGKGI Y  E I +K+GKK
Sbjct:   83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKK 176

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|B2IK77|RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=rplF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.613e-25
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   +  TGIDKQRV Q AA +R  +PPE YKGKG+ Y  E I +K+GKK
Sbjct:   83 FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKK 176

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|B7IHW1|RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=rplF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.468e-24
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKS 101
            F + L+IVG+GY  RA+  G+ L + LGY+H VE+ +P  V+V     N I  +GIDKQRV Q AA +R  + P VY GKGI YV EV++ K+GKK+
Sbjct:   90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVVRLKEGKKA 184

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|O23049|RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-24
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L +VGVGY  RA   G+ L L LG+SH V++ +P +++V   +N  I  +G DK  + QFAATVR  +PPE YKGKG+ Y DE++++K+GK  K
Sbjct:  126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q2N9C6|RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rplF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.557e-24
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I GVGY  RA+A G+ L L+LGYSH+V++AVP  + V       +  +GIDKQ V Q AA +R  + PE YKGKGI Y  E + +K+GKK
Sbjct:   83 FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKK 176

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Match: sp|Q3SSV1|RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.073e-24
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK 100
            F + L+I+GVGY  RA   G+ L L LGYSH+V  AVP  + +   K   I  TG D QRV Q AA +R  +PPE YKGKG+ Y DE I +K+GKK
Sbjct:   83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKK 176

[Close]

BLAST of evm.model.Chr09.1261 vs. Araport11
Match: AT2G18400.1 (| ribosomal protein L6 family protein | Chr2:7989665-7989973 REVERSE LENGTH=102 | 201606)

HSP 1 Score: 182.57 bits (462), Expect = 2.711e-61
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93
            MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVELAVPPAVRVFCFKNNV+CCTGIDKQRVHQFAATVR+CKPPE YKGKGIMY DEV+
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93

[Close]

BLAST of evm.model.Chr09.1261 vs. Araport11
Match: AT1G05190.1 (| Ribosomal protein L6 family | Chr1:1502515-1503738 REVERSE LENGTH=223 | 201606)

HSP 1 Score: 95.1301 bits (235), Expect = 1.943e-25
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0

Query:    5 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            F + L +VGVGY  RA   G+ L L LG+SH V++ +P +++V   +N  I  +G DK  + QFAATVR  +PPE YKGKG+ Y DE++++K+GK  K
Sbjct:  126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N4G1|A0A4D6N4G1_VIGUN (Large subunit ribosomal protein L6 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g2812 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|I1LCL9|I1LCL9_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100780944 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9V9G3|A0A0L9V9G3_PHAAN (Ribosomal_L6 domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g029200 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A151RWF8|A0A151RWF8_CAJCA (Ribosomal_L6 domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_023095 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SP24|A0A0S3SP24_PHAAN (Ribosomal_L6 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G123300 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.478e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|A0A445IQ31|A0A445IQ31_GLYSO (60S ribosomal protein L6, mitochondrial (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_027564 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.668e-67
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:   53 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 154

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|V7BEI5|V7BEI5_PHAVU (Ribosomal_L6 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G139500g PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.419e-67
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFA+TVRTCKPPEVYKGKGIMYVDEV+KKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFASTVRTCKPPEVYKGKGIMYVDEVVKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|I1KDT7|I1KDT7_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100527168 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.419e-67
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVEL VPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|C6T6I8|C6T6I8_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 GN=100811303 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.053e-67
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSH+VELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKG+MYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVIKKKQGKKSK 102

[Close]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Match: tr|C6T1H6|C6T1H6_SOYBN (Ribosomal_L6 domain-containing protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.741e-67
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102
            MEAKFFRFL+IVGVGYKARAEAAGRLLYLKLGYSH+VELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKG+MYVDEVIKKKQGKKSK
Sbjct:    1 MEAKFFRFLRIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVIKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
BLAST of evm.model.Chr09.1261 vs. Araport11
BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL

BLAST of evm.model.Chr09.1261 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
sp\|P26861\|RM06_MARPO	4.692e-48	70.00	60S ribosomal protein L6, mitochondrial OS=Marchan...	[more]
sp\|Q38US6\|RL6_LACSS	1.958e-26	48.98	50S ribosomal protein L6 OS=Lactobacillus sakei su...	[more]
sp\|P82193\|RK6_SPIOL	3.609e-26	48.98	50S ribosomal protein L6, chloroplastic OS=Spinaci...	[more]
sp\|A7HM37\|RL6_FERNB	3.231e-25	52.58	50S ribosomal protein L6 OS=Fervidobacterium nodos...	[more]
sp\|Q1GPB4\|RL6_SPHAL	5.100e-25	51.04	50S ribosomal protein L6 OS=Sphingopyxis alaskensi...	[more]
sp\|B2IK77\|RL6_BEII9	6.613e-25	48.96	50S ribosomal protein L6 OS=Beijerinckia indica su...	[more]
sp\|B7IHW1\|RL6_THEAB	1.468e-24	49.48	50S ribosomal protein L6 OS=Thermosipho africanus ...	[more]
sp\|O23049\|RK6_ARATH	1.899e-24	46.94	50S ribosomal protein L6, chloroplastic OS=Arabido...	[more]
sp\|Q2N9C6\|RL6_ERYLH	2.557e-24	48.96	50S ribosomal protein L6 OS=Erythrobacter litorali...	[more]
sp\|Q3SSV1\|RL6_NITWN	3.073e-24	51.04	50S ribosomal protein L6 OS=Nitrobacter winogradsk...	[more]

BLAST of evm.model.Chr09.1261 vs. Araport11
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT2G18400.1	2.711e-61	92.47	\| ribosomal protein L6 family protein \| Chr2:79896...	[more]
AT1G05190.1	1.943e-25	46.94	\| Ribosomal protein L6 family \| Chr1:1502515-15037...	[more]

BLAST of evm.model.Chr09.1261 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
tr\|A0A4D6N4G1\|A0A4D6N4G1_VIGUN	6.478e-68	100.00	Large subunit ribosomal protein L6 OS=Vigna unguic...	[more]
tr\|I1LCL9\|I1LCL9_SOYBN	6.478e-68	100.00	Ribosomal_L6 domain-containing protein OS=Glycine ...	[more]
tr\|A0A0L9V9G3\|A0A0L9V9G3_PHAAN	6.478e-68	100.00	Ribosomal_L6 domain-containing protein OS=Phaseolu...	[more]
tr\|A0A151RWF8\|A0A151RWF8_CAJCA	6.478e-68	100.00	Ribosomal_L6 domain-containing protein OS=Cajanus ...	[more]
tr\|A0A0S3SP24\|A0A0S3SP24_PHAAN	6.478e-68	100.00	Ribosomal_L6 domain-containing protein OS=Vigna an...	[more]
tr\|A0A445IQ31\|A0A445IQ31_GLYSO	1.668e-67	100.00	60S ribosomal protein L6, mitochondrial (Fragment)...	[more]
tr\|V7BEI5\|V7BEI5_PHAVU	2.419e-67	98.04	Ribosomal_L6 domain-containing protein OS=Phaseolu...	[more]
tr\|I1KDT7\|I1KDT7_SOYBN	2.419e-67	99.02	Ribosomal_L6 domain-containing protein OS=Glycine ...	[more]
tr\|C6T6I8\|C6T6I8_SOYBN	4.053e-67	98.04	Ribosomal_L6 domain-containing protein OS=Glycine ...	[more]
tr\|C6T1H6\|C6T1H6_SOYBN	8.741e-67	97.06	Ribosomal_L6 domain-containing protein OS=Glycine ...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0
Date Performed: 2023-06-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 23..39 score: 44.97 coord: 65..86 score: 55.87
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 5..102 e-value: 2.8E-34 score: 119.1
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 5..100
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 12..88 e-value: 1.1E-17 score: 64.4
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..100

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr09:20748744..20751623-
coding sequence from alignment at Chr09:20748744..20751623-

mRNA sequence

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=309bp
ATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGTCCGAGTTTTCTGCTTC
AAGAACAATGTAATTTGTTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG

protein sequence of evm.model.Chr09.1261_hau_v1

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=102bp
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCF
KNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK
SK

mRNA from alignment at Chr09:20748744..20751623-

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=2880bp; location=Sequence derived from: Chr09:20748744..20751623- (Vigna unguiculata subsp. sesquipedalis
ATTTACAGGAAGCCAAACAGTTCAGGGAGTGCTCTCCCTTTCTCCACCCA
ACCTCGCGCAGCTTCTACTCCCAACCCGCCGCAGACGACGGCGAGGGCGG
GCGACGACGACCGAGGACGACTGTCTGCGACGGTGAACGGTTCAAAAGCA
GGAACGAACCAAACCAGTAAGAAGAACAAGAGATCCTAATCCCTAATTAG
TGAGTTTTCTTCACTCTTCCACCTAATTTTCTGCAGCTGAGTAAAAAAAT
AATTTAGATCTTCCAGCATGAATTTCTCACATCCTTCAATGAAATCTGCA
CCATTCAGTGAGCATTTGCAGTTTATCAATTATTCATGTATGATAGACTG
AAGCTTATTTGTGATATTCACAAGGATGCTTTTTTACTGTGTATTAACTG
GAAAAAACTAAAAAAATGTTTAGCACACCGAAATTTACATCCAAATCAAC
TTATTACAAAGAAAATTTCCTAAGTTCATGATATACACAATGGACTTTGA
ACTTCAATTTGTTCCAGACTCTGGGTTCACCAATGGTTGAGCTGGAAGAA
CATTTGATCTTTGCTGGACCAGTTCATTCACAGTTGAAGCTAGCTGCCCT
ATTTGAGTCTTCAAATCCTGGATAGTTACTTCAATGGAGGGATCAATTCT
GTTGTTTTGTTGTTGTGCCACATATCATTGTGGATTGTTGATGTTGGTTA
GTAGGGCCTTGAATTGCTCTCAAAAGCTGAGTATTAGGTGTAAGCTTAGG
TACGGCTATGGTATTCTGGAAATACTGTGCGTGTGGTAGAGATGGATCTG
CTGGAGTGTAGTTTGGGTTAGGGATCCATCTCGGGTTGCCTTGCTGCTGA
TTCCCTGCTGCTTCTGAAAAATTCCAGCCACTAGTTGTGCATCCAAATTG
GCTACATCTTGAAGCTGTGGGCATTGGTCCGTGAAATGGTCACTTGCAGC
ACATAATCCGCAATGTTTAGCTACAACATTAACCCACTGATTCAAGGCTA
TCTTCCTCATCACTGTGATCAATTCCAAAATTTTGTTGCCTATCTTCATA
TTATTTTCAGTCAACAATTTTGTCCTTGAATAACATTTACTTCAAGTTCA
TGAACTGCCCTGCTGGTACTTCCCCTAATGCCGAACTACTGGCTGTTTTC
AGCTATGTTAGAAATCAAGTAACGGCCTGCAGCTGGTGTCTTATCCACAA
ACACCCCTTCACTAGCAGCATCAAGCAAATTCCTGTCAGCCATTGTCAAT
CCCACATAAAAGTATTGTAGTAGCAGTTGTTCACTAATTTGATGATTAGG
ACAGGTTGCACACAACTTGTTAAAACGTTGCCAATACTCCGGGAGGCTCT
CTCCTTGTGATTGCCTAATTCCACTGATTTCCTTTCTAACTGATGTTGTC
CTTGATGCTAGAAAGAACTTCTCCAGAAATTTTCTTCCCATCCAGCTATC
GGTTTTGGTTGAGAGAACAACCATGCTTTGGCTGCATCACATAAAGAGAA
GGGAAATGCCTTCATTTGAACCACTTCTTCAGAAATGTTGGCCGGTTTCA
TGGTTGAGCATACAATGATGAACTTCAAGTGTTTATGAGGATCCTCTCCA
ATCATTCCATGAAACCAATGATAAGGGACTTATCACTCCCATCAAGTAAC
ACCACCAAATGAGCATTCTTTGCCAATGAAACCAACATTAGTAAAACTCA
TGTGCGCGTTTCATTTTCAGTTGGAAGGAACATTTCATATTTCAATTATT
ATTCATGCATTTGGTATGCAATTTTTTCAATGATACATCTGCTCCACTCT
GTATAGTAATTTACACTTGCTCCTGCAGAATGCATACTATGATTTCGATA
AGTGTTACTTGTCTTTCATCTTTTGTTTGCAATGGCTTAATAGTAAATGA
TAATTAATATATTTGTGTTTTAATGAGTATGATATTACATATGCTTCCCC
TGTATTTTCTTTCCTGTTTTATTTAATTGTCAAAACCTTTAGTTTTTTTA
TAATGGACTTTTGTTTTTGGGTTCGAGAAATGTTGAGGTGGGTAGTTTGA
GCATTGCTCCCACCAATTCATTTTGGGTATAATTTATGTCCGAGGAATGA
TTGAAGTCTTGTAAGAATATCTAGTGATTTTGTGATTTTGTGGGAGGAAA
AGAGTTATTTAATATTTTGCTGGGTATAGTATTTGTCTTAATTACCTATT
TCCAGAAATATCATTCTGAAATATCTTGTTCCTGAGTACGTAACATTCTT
CCTCAAAACAAATGCAACAATTTTCGTTCCCTGACAATTTTAGGAAACTT
ATTTGCTTAGGAATTGATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTG
TGGGTGTTGGATACAAAGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTAT
CTCAAATTGGGGTACAGCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGT
CCGAGTTTTCTGCTTCAAGAACAATGTAATTTGTTGTACAGGAATTGACA
AACAAAGAGTGCACCAGTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCT
GAAGTTTACAAAGGCAAGGGTATAATGTATGTTGATGAAGTTATCAAGAA
AAAACAAGGAAAGAAGTCTAAATAGTCATATAATCTTTAGGTGATTTGGT
GAAGTCTAGACTGAGATGTACATTGGCTACACTCTGTCTGCACAAATCAC
TATGATTAACTCTAGCCTTCAAACAATTTTTGTGTTGGAATCCTTGAACA
TTATGGTAATAATTTATTGCTTTGAAATAACTATAATTTCTTGTTTCAGT
AGGATTGATATGTACCTTTAGAGTTTATCTTACTTTAAATATAATATTCT
TATGAAAGGCTCCTATTCTTTTCGTTCCTT

Coding sequence (CDS) from alignment at Chr09:20748744..20751623-

>evm.model.Chr09.1261_hau_v1 ID=evm.model.Chr09.1261_hau_v1; Name=evm.model.Chr09.1261; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=309bp; location=Sequence derived from: Chr09:20748744..20751623- (Vigna unguiculata subsp. sesquipedalis
ATGGAGGCCAAATTTTTCCGCTTTCTGAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTTCCTCCTGCTGTCCGAGTTTTCTGCTTC
AAGAACAATGTAATTTGTTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCTACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019906	Ribosomal_uL6_bac-type
IPR036789	Ribosomal_uL6-like_a/b-dom_sf
IPR020040	Ribosomal_uL6_a/b-dom
IPR000702	Ribosomal_uL6-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Search form

evm.model.Chr09.1261