rna-XM_014638171.2
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G48140.1 (| B12D protein | Chr3:17778471-17779299 FORWARD LENGTH=88 | 201606) HSP 1 Score: 130.183 bits (326), Expect = 4.706e-41 Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 0 Query: 3 ANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPS 88
A+RWL+PEVYPLFAA GVAVGIC L+RNIT NPEVR TK NRAAG+L+N EGEKY ++ LRK+VR + P+IMP +N FF++P+
Sbjct: 2 ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDPT 87
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.1 (| B12D protein | Chr3:11745299-11746481 FORWARD LENGTH=87 | 201606) HSP 1 Score: 107.071 bits (266), Expect = 7.120e-32 Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0 Query: 5 RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
RW++PEVYPL A+G + QL RN NP+ R+ K +R G+LEN +EGEKY+QH RKY+R R PQ+MPS+N FFS+ N
Sbjct: 3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 87
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.3 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606) HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0 Query: 18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
+G + QL RN NP+ R+ K +R G+LEN +EGEKY+QH RKY+R R PQ+MPS+N FFS+ N
Sbjct: 1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72
BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.2 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606) HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0 Query: 18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
+G + QL RN NP+ R+ K +R G+LEN +EGEKY+QH RKY+R R PQ+MPS+N FFS+ N
Sbjct: 1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIS1|A0A1S3TIS1_VIGRR (uncharacterized protein LOC106755937 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755937 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.854e-59 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NJK5|A0A4D6NJK5_VIGUN (NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g114 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.054e-58 Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVL+NFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLDNFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSDPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S166|A0A0S3S166_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G425900 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58 Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct: 1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UAL3|A0A0L9UAL3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g313300 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58 Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct: 1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|V7D215|V7D215_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G258900g PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 8.008e-56 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENFEEGEKYS+H LRKYVRG+ PQIMPSVNNFFSEPSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFEEGEKYSEHSLRKYVRGKNPQIMPSVNNFFSEPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1MYJ0|I1MYJ0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500344 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55 Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QRU1|A0A0B2QRU1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047161 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55 Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|C6T1F7|C6T1F7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.392e-55 Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQ+MPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQVMPSVNNFFSDPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1LNB8|I1LNB8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100527541 PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.436e-54 Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKQNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HI47|A0A445HI47_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_037137 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 5.550e-54 Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0 Query: 1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct: 1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKRNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89 The following BLAST results are available for this feature:
BLAST of rna-XM_014638171.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of rna-XM_014638171.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 4 Position : 0 Zoom : x 1
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=270bpback to top protein sequence of rna-XM_014638171.2_VrVC1973A-SNU_v1 >rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=89bpback to top mRNA from alignment at chr02:22359348..22360356+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=1009bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr02:22359348..22360356+ >rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=CDS; length=270bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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