rna-XM_014638171.2

Transcript Overview


Name	rna-XM_014638171.2
Unique Name	rna-XM_014638171.2_VrVC1973A-SNU_v1
Type	mRNA
Organism	Vigna radiata (Mung bean, green gram)
Sequence length	270
Product	uncharacterized LOC106755937

References

External references for this mRNA


Database	Accession
GeneID	106755937
Genbank	XM_014638171.2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr02	chromosome	chr02:22359348..22360356 +	Vigna radiata cv. VC1973A genome v6.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna radiata cv. VC1973A genome v6.0	2023-06-13
InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL	2023-06-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
asvrvL034	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anvrvL0221	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0311	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0351	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvrvL400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anvrvL0689	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caivrvL483	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavrvL398	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavrvL512	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvrvL0014	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvrvL0222	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvrvL0429	Cajanus cajan Asha genome v1.0	Cajanus cajan
crvrvL456	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvrvL801	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvvrvL019	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
psvrvL378	Pisum sativum Cameor genome v1a	Pisum sativum
psvrvL385	Pisum sativum Cameor genome v1a	Pisum sativum
pvvrvL215	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
psvrvL646	Pisum sativum Cameor genome v1a	Pisum sativum
tifvrvL219	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vrvvrvR119	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvssR260	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR279	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvuR193	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR175	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvzwsR204	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuR212	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR195	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvzwsR231	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canvrvL373	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL484	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvrvL195	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL341	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvrvL369		Cicer arietinum
carvrvL482		Cicer arietinum
ccavrvL026	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL711	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vrvvumR195	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvumR218	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvvaR236	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR237	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR253	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvstR185	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR193	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR206	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvrvL039	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL346	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvrvL015	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL202	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vrvvunR187	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR205	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
PvulFLAVERTChr01.1001736	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-KK1_002805	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat07G0200100-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigst.04G287400.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
jg30379.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Cr_13043.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_20490	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_004502272.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-TanjilR_32995	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_16787	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
XM_058925609.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigun01g244600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Ca_11317	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Ca_13735.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
XM_058927440.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
jg53589.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-TanjilR_11010	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
XM_058875848.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vum_04G03200.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
LR48_mrnaVigan03g313300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Psat05G0283200-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
rna-XM_004504424.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Cr_21890.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vigun01g244600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigan.04G425900.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va03G084980.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
evm.model.Chr01.2302	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_00114.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Phvul.001G258900.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC106755937	gene-LOC106755937_VrVC1973A-SNU_v1	Vigna radiata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_014638171.2-1	exon-XM_014638171.2-1_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014638171.2-2	exon-XM_014638171.2-2_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014638171.2-3	exon-XM_014638171.2-3_VrVC1973A-SNU_v1	Vigna radiata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_014493657.1	cds-XP_014493657.1_VrVC1973A-SNU_v1	Vigna radiata	CDS
cds-XP_014493657.1	cds-XP_014493657.1_VrVC1973A-SNU_v1_2	Vigna radiata	CDS
cds-XP_014493657.1	cds-XP_014493657.1_VrVC1973A-SNU_v1_3	Vigna radiata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_014638171.2_VrVC1973A-SNU_v1	rna-XM_014638171.2_VrVC1973A-SNU_v1	Vigna radiata	polypeptide
rna-XM_014638171.2_VrVC1973A-SNU_v1	rna-XM_014638171.2_VrVC1973A-SNU_v1-protein	Vigna radiata	polypeptide

Homology

[Close]

BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G48140.1 (| B12D protein | Chr3:17778471-17779299 FORWARD LENGTH=88 | 201606)

HSP 1 Score: 130.183 bits (326), Expect = 4.706e-41
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 0

Query:    3 ANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPS 88
            A+RWL+PEVYPLFAA GVAVGIC   L+RNIT NPEVR TK NRAAG+L+N  EGEKY ++ LRK+VR + P+IMP +N FF++P+
Sbjct:    2 ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDPT 87

[Close]

BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.1 (| B12D protein | Chr3:11745299-11746481 FORWARD LENGTH=87 | 201606)

HSP 1 Score: 107.071 bits (266), Expect = 7.120e-32
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    5 RWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            RW++PEVYPL  A+G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 87

[Close]

BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.3 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0

Query:   18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            +G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72

[Close]

BLAST of rna-XM_014638171.2 vs. Araport11
Match: AT3G29970.2 (| B12D protein | Chr3:11746016-11746481 FORWARD LENGTH=72 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-23
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0

Query:   18 VGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            +G    +   QL RN   NP+ R+ K +R  G+LEN +EGEKY+QH  RKY+R R PQ+MPS+N FFS+  N
Sbjct:    1 MGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQEDN 72

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIS1|A0A1S3TIS1_VIGRR (uncharacterized protein LOC106755937 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755937 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.854e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NJK5|A0A4D6NJK5_VIGUN (NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g114 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.054e-58
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVL+NFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLDNFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSDPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S166|A0A0S3S166_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G425900 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UAL3|A0A0L9UAL3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g313300 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.493e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWL+PEVYPLFAAVG AVGICGMQLVRNITTNPEVRVTKSNRAAG+LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLRPEVYPLFAAVGAAVGICGMQLVRNITTNPEVRVTKSNRAAGILENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|V7D215|V7D215_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G258900g PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.008e-56
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENFEEGEKYS+H LRKYVRG+ PQIMPSVNNFFSEPSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFEEGEKYSEHSLRKYVRGKNPQIMPSVNNFFSEPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1MYJ0|I1MYJ0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500344 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QRU1|A0A0B2QRU1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047161 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.622e-55
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|C6T1F7|C6T1F7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.392e-55
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTK NRAAG+LENF EGEKYSQH LRKYVRG+ PQ+MPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKYSQHSLRKYVRGKQPQVMPSVNNFFSDPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|I1LNB8|I1LNB8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100527541 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.436e-54
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKQNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89

[Close]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HI47|A0A445HI47_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_037137 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.550e-54
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0

Query:    1 MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGVLENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN 89
            MAANRWLKPEVYPLFA+VGVAVGICGMQLVRNITTNPEVRVTK NR AG+LENF EGEKYSQH LRKYVRG+ PQIMPSVNNFFS+PSN
Sbjct:    1 MAANRWLKPEVYPLFASVGVAVGICGMQLVRNITTNPEVRVTKRNRTAGILENFAEGEKYSQHSLRKYVRGKQPQIMPSVNNFFSDPSN 89

The following BLAST results are available for this feature:

BLAST of rna-XM_014638171.2 vs.
BLAST of rna-XM_014638171.2 vs. Araport11
BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL

BLAST of rna-XM_014638171.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of rna-XM_014638171.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G48140.1	4.706e-41	66.28	\| B12D protein \| Chr3:17778471-17779299 FORWARD LE...	[more]
AT3G29970.1	7.120e-32	52.94	\| B12D protein \| Chr3:11745299-11746481 FORWARD LE...	[more]
AT3G29970.3	1.625e-23	50.00	\| B12D protein \| Chr3:11746016-11746481 FORWARD LE...	[more]
AT3G29970.2	1.625e-23	50.00	\| B12D protein \| Chr3:11746016-11746481 FORWARD LE...	[more]

BLAST of rna-XM_014638171.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
tr\|A0A1S3TIS1\|A0A1S3TIS1_VIGRR	2.854e-59	100.00	uncharacterized protein LOC106755937 OS=Vigna radi...	[more]
tr\|A0A4D6NJK5\|A0A4D6NJK5_VIGUN	1.054e-58	97.75	NADH-ubiquinone reductase complex 1 MLRQ subunit O...	[more]
tr\|A0A0S3S166\|A0A0S3S166_PHAAN	4.493e-58	96.63	Uncharacterized protein OS=Vigna angularis var. an...	[more]
tr\|A0A0L9UAL3\|A0A0L9UAL3_PHAAN	4.493e-58	96.63	Uncharacterized protein OS=Phaseolus angularis OX=...	[more]
tr\|V7D215\|V7D215_PHAVU	8.008e-56	93.26	Uncharacterized protein OS=Phaseolus vulgaris OX=3...	[more]
tr\|I1MYJ0\|I1MYJ0_SOYBN	2.622e-55	92.13	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]
tr\|A0A0B2QRU1\|A0A0B2QRU1_GLYSO	2.622e-55	92.13	Uncharacterized protein OS=Glycine soja OX=3848 GN...	[more]
tr\|C6T1F7\|C6T1F7_SOYBN	4.392e-55	91.01	Uncharacterized protein OS=Glycine max OX=3847 PE=...	[more]
tr\|I1LNB8\|I1LNB8_SOYBN	2.436e-54	89.89	Uncharacterized protein OS=Glycine max OX=3847 GN=...	[more]
tr\|A0A445HI47\|A0A445HI47_GLYSO	5.550e-54	89.89	Uncharacterized protein OS=Glycine soja OX=3848 GN...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 8..75 e-value: 6.4E-26 score: 89.9
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 2..88

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr02:22359348..22360356+
coding sequence from alignment at chr02:22359348..22360356+

mRNA sequence

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=270bp
ATGGCCGCCAACAGATGGTTGAAACCTGAGGTATACCCACTCTTCGCTGC
AGTTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAA
CCACCAATCCTGAAGTCAGGGTGACCAAGAGCAACAGAGCTGCAGGAGTT
CTCGAGAACTTTGAGGAGGGAGAGAAATATTCACAACATGGTCTGAGGAA
GTATGTTCGTGGGAGGACCCCTCAGATCATGCCATCCGTCAACAACTTCT
TCTCTGAACCATCAAACTAA

protein sequence of rna-XM_014638171.2_VrVC1973A-SNU_v1

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=89bp
MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKSNRAAGV
LENFEEGEKYSQHGLRKYVRGRTPQIMPSVNNFFSEPSN

mRNA from alignment at chr02:22359348..22360356+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=mRNA; length=1009bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiata
AACCAAGAAAGTAGAAACCCAACCATTCATTCACTtacaattcaagaaaa
acaaGCAATCGTTGACCAAATTCTTTGAATTTGGTAGCCAAATTTGTAGG
GTTTTTGCATGAACCATAAAATGGGCATGATTTTCGCATCACATTCACAC
ATATAAACCAGTTACCACATTCATCATTCCTCATTCAGTTTTGCTCCGCA
TCCTTCTTGTTAAGTTTCCTTGGAAGCGGAGCCTGTTTCTTGTTTTCTGT
TTCTCCTTCgttcaattttctcttttctgcaGCTTCTCTTCTCAACATGG
CCGCCAACAGATGGTTGAAACCTGAGGTACTTTTATGTTTCTTGTATATT
CATGAATTGCATCTCATAAAGTTGGTTAAACTGGTGCACTTTTTGAACAT
TGAATTGGTTCTTGTTACGTGCGAATAGGTATACCCACTCTTCGCTGCAG
TTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAACC
ACCAATCCTGAAGTCAGGTATGGTTTcatgtttttgtttgattatggttt
catttttcattgttCAGATTCAATGTTTGTTCTGTCATAAGTATTTGTTC
TGGTGTGTGTTGTTGAATTTGGTTATGGTTTGATGATTTCAGGGTGACCA
AGAGCAACAGAGCTGCAGGAGTTCTCGAGAACTTTGAGGAGGGAGAGAAA
TATTCACAACATGGTCTGAGGAAGTATGTTCGTGGGAGGACCCCTCAGAT
CATGCCATCCGTCAACAACTTCTTCTCTGAACCATCAAACTAAATCAGAT
GCCAAATTTTCTGTTTCATTTTCGATATTCCTTTCAGTTATATCAAATTT
TGGCTTTTTGGATATTGGGAATCGAGAAGTAGGAGACAACATTAATCaga
tctttcatttttcttccaacATGTACTATGATCGTGTAATTTGTTGATGG
ATGACATTCAATTTAacctaattataataaaattatatactttacACATT
ATCAAGTTA

Coding sequence (CDS) from alignment at chr02:22359348..22360356+

>rna-XM_014638171.2_VrVC1973A-SNU_v1 ID=rna-XM_014638171.2_VrVC1973A-SNU_v1; Name=rna-XM_014638171.2; organism=Vigna radiata; type=CDS; length=270bp; location=Sequence derived from: chr02:22359348..22360356+ (Vigna radiata
ATGGCCGCCAACAGATGGTTGAAACCTGAGGTATACCCACTCTTCGCTGC
AGTTGGTGTAGCTGTCGGGATCTGCGGTATGCAACTTGTGAGGAACATAA
CCACCAATCCTGAAGTCAGGGTGACCAAGAGCAACAGAGCTGCAGGAGTT
CTCGAGAACTTTGAGGAGGGAGAGAAATATTCACAACATGGTCTGAGGAA
GTATGTTCGTGGGAGGACCCCTCAGATCATGCCATCCGTCAACAACTTCT
TCTCTGAACCATCAAACTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010530	B12D

Search form

rna-XM_014638171.2