rna-XM_004497517.3

Transcript Overview


Name	rna-XM_004497517.3
Unique Name	rna-XM_004497517.3_CaCDCfrontier-NCBI_v1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	651
Product	uncharacterized LOC101500104

References

External references for this mRNA


Database	Accession
GeneID	101500104
GenBank	XM_004497517.3

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:21736968..21739243 -	Cicer arietinum CDC Frontier NCBI RefSeq v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-04
InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot	2024-01-25
Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL	2024-01-25

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cacanL131	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascanL346	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ancanL0639	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancanL0838	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caicanL0451	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancanL1094	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caicanL0465	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
canccR0449	Cajanus cajan Asha genome v1.0	Cajanus cajan
cancrR415	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cantifR238	Vicia faba cv. Tiffany genome v1.0	Vicia faba
canvfhR247	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
canvrvR341	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
canpvR358	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
canvssR316	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvssR355	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvssR360	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvuaR199	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR213	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvuaR251	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuR270	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canzwsR242	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canzwsR253	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canzwsR279	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
canpsR263	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR295	Pisum sativum Cameor genome v1a	Pisum sativum
canpsR369	Pisum sativum Cameor genome v1a	Pisum sativum
avjcanL314	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjcanL407	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
cancarR212		Cicer arietinum
cancarR236		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
rna-KK1_006370	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat6g077160.2	Pisum sativum Cameor genome v1a	Pisum sativum
rna-TanjilR_10570	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Ca_19078	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Ca_11383.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC101500104	gene-LOC101500104_CaCDCfrontier-NCBI_v1	Cicer arietinum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_004497517.3_CaCDCfrontier-NCBI_v1	rna-XM_004497517.3_CaCDCfrontier-NCBI_v1	Cicer arietinum	polypeptide
rna-XM_004497517.3_CaCDCfrontier-NCBI_v1	rna-XM_004497517.3_CaCDCfrontier-NCBI_v1-protein	Cicer arietinum	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_004497517.3-3	exon-XM_004497517.3-3_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon
exon-XM_004497517.3-2	exon-XM_004497517.3-2_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon
exon-XM_004497517.3-1	exon-XM_004497517.3-1_CaCDCfrontier-NCBI_v1	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_004497574.1	cds-XP_004497574.1_CaCDCfrontier-NCBI_v1_3	Cicer arietinum	CDS
cds-XP_004497574.1	cds-XP_004497574.1_CaCDCfrontier-NCBI_v1_2	Cicer arietinum	CDS
cds-XP_004497574.1	cds-XP_004497574.1_CaCDCfrontier-NCBI_v1	Cicer arietinum	CDS

Homology

[Close]

BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:900673-902719 REVERSE LENGTH=241)

HSP 1 Score: 267.7 bits (683), Expect = 5.176e-91
Identity = 130/177 (73.45%), Postives = 146/177 (82.49%), Query Frame = 0

Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRSETD+INVVEQRIWHSMEEG FE LPGKGKPL L TNPHADPAEDTLYRIL+KN  APEWVELNKEIR++  EWR+SLKKAW  K   D S W E S+ LK +LK+IN+ VFRYNLIVPFGRQMFGLKWEKEI  L+E
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINVVEQRIWHSMEEGHFENLPGKGKPLNLHTNPHADPAEDTLYRILNKNGFAPEWVELNKEIRNKAKEWRVSLKKAWTMKLEEDQSGWEERSDLLKNELKQINNMVFRYNLIVPFGRQMFGLKWEKEIDRLKE 241

[Close]

BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:901452-902719 REVERSE LENGTH=363)

HSP 1 Score: 53.5286 bits (127), Expect = 2.630e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0

Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105

[Close]

Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105

[Close]

Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8VCE1|DJC28_MOUSE (DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.657e-14
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 0

Query:   86 VVEQRIWHSMEEGQFEKLPGKGKPLK-LDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSL---KKAWANKCS-GDHSVWVESSEALKLQLKEINDKVFRYNLIVP-FGRQMFGLKWEKEISYLEE 216
            +VE  I  SM +G F+ L GKGKPLK      + DP    L RIL  N   PEW+ + KEI+  I + R +L   +K   N  S  +   W +  E  + +++++N ++  +NLIVP   RQ      +KEI  ++E
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKVHFDAQKEIIRVQE 339

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9NX36|DJC28_HUMAN (DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 3.062e-11
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 0

Query:   86 VVEQRIWHSMEEGQFEKLPGKGKPLKLDTN-PHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWR----MSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVP-FGRQMFGLKWEKEI 211
            +VE  I  SM +G F+ L GKGKPLK  ++  + DP    L RIL  N   PEW+   KEI   I + R    +S KK        +   W    E  +  ++++N ++  +NLIVP   RQ      +KEI
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILTRQKVHFDAQKEI 334

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y0X2|A0A1S2Y0X2_CICAR (Uncharacterized protein LOC101500104 OS=Cicer arietinum OX=3827 GN=LOC101500104 PE=4 SV=1)

HSP 1 Score: 442.58 bits (1137), Expect = 5.156e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0

Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE
Sbjct:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4W481|A0A9D4W481_PEA (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_062088 PE=4 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 6.913e-126
Identity = 186/219 (84.93%), Postives = 194/219 (88.58%), Query Frame = 0

Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLRL R  SLN LSL    NS +STVR+ SSSSS    GN+KPD KKL DRLS+VIDAVNDRKLPPELRGQRN VRSETDLINVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRSRIS+WR+SLKKAWANKCSGD S+WVESSEALK QLKEINDKVFRYNLIVPFGRQM GLKWEKE+ YLEE
Sbjct:   21 MSVATYLRLRRHASLNFLSLFHFHNSPLSTVRWSSSSSSPSSSGNTKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNVVRSETDLINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISQWRVSLKKAWANKCSGDQSMWVESSEALKSQLKEINDKVFRYNLIVPFGRQMSGLKWEKELGYLEE 239

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N7A9|A0A2K3N7A9_TRIPR (DnaJ subfamily c member 28-like protein OS=Trifolium pratense OX=57577 GN=L195_g022168 PE=4 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.895e-122
Identity = 184/220 (83.64%), Postives = 196/220 (89.09%), Query Frame = 0

Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNS----KPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLRL R  SLN LSLL   NS +STVR+CSSSSSS ++    KPD KKL DRLS+VIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSME+GQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEW+ELNKEIRSRISEW++SLKKAWANK SGDHS+WVESSE LK QLKEIN+KVFRYNLIVPFGRQM GL WEKE+SYLEE
Sbjct:    1 MSMATYLRLGRCVSLNSLSLLHFHNSPLSTVRYCSSSSSSPSTSVKSKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEDGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWIELNKEIRSRISEWKISLKKAWANKYSGDHSMWVESSEILKSQLKEINNKVFRYNLIVPFGRQMSGLNWEKELSYLEE 220

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P0V8|A0A2Z6P0V8_TRISU (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_25560 PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 7.812e-122
Identity = 181/218 (83.03%), Postives = 192/218 (88.07%), Query Frame = 0

Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNS--KPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLR  R  SLN LSLL   NS +STVR+ SSS  S +   KPD KKL DRLS+VIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSME+GQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRSRISEW++SLKKAW+NKCSGDHS+WVESSE LK QLK+INDKVFRYNLIVPFGRQM GL WEKE+SYLEE
Sbjct:    1 MMMATYLRFGRCVSLNSLSLLHFHNSPLSTVRYSSSSLPSSSVKSKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEDGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISEWKISLKKAWSNKCSGDHSMWVESSEVLKSQLKQINDKVFRYNLIVPFGRQMSGLNWEKELSYLEE 218

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MWQ7|A0A4D6MWQ7_VIGUN (Nucleobase:cation symporter-1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g881 PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.487e-113
Identity = 176/219 (80.37%), Postives = 185/219 (84.47%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGN-----SKPD-NKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F S+N   L       VST RF SSSSSS +      KP   KKL+DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWRMSLKKAWA KC GDHS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTSINSRDLF------VSTARFSSSSSSSSSSSSSSGKPKTGKKLMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRMSLKKAWATKCGGDHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 214

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RXA7|A0A0B2RXA7_GLYSO (DnaJ-like subfamily C member 28 OS=Glycine soja OX=3848 GN=D0Y65_026176 PE=4 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 6.497e-113
Identity = 176/223 (78.92%), Postives = 187/223 (83.86%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS----------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL RF +++ LSL       VST RF  SSSSS          G SK   KKL+DRLS VIDAVNDRKLPPELRGQR+NVRSETD+INVVEQRIWH+MEEG+FE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR SLKKAWA KCSGDHS WVESSEALK QL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLGRFTTIDSLSLF------VSTARFSFSSSSSSSSSSSSSSSGKSKT-GKKLMDRLSAVIDAVNDRKLPPELRGQRSNVRSETDIINVVEQRIWHTMEEGKFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRKSLKKAWATKCSGDHSEWVESSEALKSQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 217

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|I1L947|I1L947_SOYBN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_10G063500 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 2.022e-112
Identity = 176/221 (79.64%), Postives = 187/221 (84.62%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS--------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL RF +++ LSL       VST RF  SSSSS        G SK   KKL+DRLSTVIDAVNDRKLPPELRGQR+NVRSETD+INVVEQRIWH+MEEG+FE LPGKGKPLKLDTNPHADPAEDTLYRILSKN  APEWVELNKEIRS+ISEWR SLKKAWA KCSGDHS WVESSEALK QL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLGRFTTIDSLSLF------VSTARFSFSSSSSSSSSSSSSGKSKT-GKKLMDRLSTVIDAVNDRKLPPELRGQRSNVRSETDIINVVEQRIWHTMEEGKFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGYAPEWVELNKEIRSKISEWRKSLKKAWATKCSGDHSEWVESSEALKSQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 215

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3STB5|A0A0S3STB5_PHAAN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G290700 PE=4 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 4.412e-112
Identity = 173/222 (77.93%), Postives = 185/222 (83.33%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F ++N  +L       VST RF SSSSSS         G SK   KK +DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTINSRALF------VSTTRFSSSSSSSSSSSSSSSSGKSK-TGKKFMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRLSLKKAWATKCGGEHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TVH2|A0A0L9TVH2_PHAAN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0183910 PE=4 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 4.412e-112
Identity = 173/222 (77.93%), Postives = 185/222 (83.33%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F ++N  +L       VST RF SSSSSS         G SK   KK +DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTINSRALF------VSTTRFSSSSSSSSSSSSSSSSGKSK-TGKKFMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRLSLKKAWATKCGGEHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216

[Close]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V1V8|A0A1S3V1V8_VIGRR (DnaJ homolog subfamily C member 28 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770946 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 2.969e-111
Identity = 172/222 (77.48%), Postives = 185/222 (83.33%), Query Frame = 0

Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F +++  +L       VST RF SSSSSS         G SK   KKL+DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLD NPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTIDSRALF------VSTARFSSSSSSSSSSSSSSSSGKSK-TGKKLMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDANPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRISLKKAWATKCGGEHSQWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216

The following BLAST results are available for this feature:

BLAST of rna-XM_004497517.3 vs. Araport11
BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL

BLAST of rna-XM_004497517.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
\|	5.176e-91	73.45	Symbols: no symbol available \| no full name availa...	[more]
\|	2.630e-8	60.98	Symbols: no symbol available \| no full name availa...	[more]
\|	2.630e-8	60.98	Symbols: no symbol available \| no full name availa...	[more]
\|	2.630e-8	60.98	Symbols: no symbol available \| no full name availa...	[more]

BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
sp\|Q8VCE1\|DJC28_MOUSE	1.657e-14	35.04	DnaJ homolog subfamily C member 28 OS=Mus musculus...	[more]
sp\|Q9NX36\|DJC28_HUMAN	3.062e-11	34.85	DnaJ homolog subfamily C member 28 OS=Homo sapiens...	[more]

BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
tr\|A0A1S2Y0X2\|A0A1S2Y0X2_CICAR	5.156e-157	100.00	Uncharacterized protein LOC101500104 OS=Cicer arie...	[more]
tr\|A0A9D4W481\|A0A9D4W481_PEA	6.913e-126	84.93	DnaJ homologue subfamily C member 28 conserved dom...	[more]
tr\|A0A2K3N7A9\|A0A2K3N7A9_TRIPR	2.895e-122	83.64	DnaJ subfamily c member 28-like protein OS=Trifoli...	[more]
tr\|A0A2Z6P0V8\|A0A2Z6P0V8_TRISU	7.812e-122	83.03	DnaJ homologue subfamily C member 28 conserved dom...	[more]
tr\|A0A4D6MWQ7\|A0A4D6MWQ7_VIGUN	1.487e-113	80.37	Nucleobase:cation symporter-1 OS=Vigna unguiculata...	[more]
tr\|A0A0B2RXA7\|A0A0B2RXA7_GLYSO	6.497e-113	78.92	DnaJ-like subfamily C member 28 OS=Glycine soja OX...	[more]
tr\|I1L947\|I1L947_SOYBN	2.022e-112	79.64	DnaJ homologue subfamily C member 28 conserved dom...	[more]
tr\|A0A0S3STB5\|A0A0S3STB5_PHAAN	4.412e-112	77.93	DnaJ homologue subfamily C member 28 conserved dom...	[more]
tr\|A0A0L9TVH2\|A0A0L9TVH2_PHAAN	4.412e-112	77.93	DnaJ homologue subfamily C member 28 conserved dom...	[more]
tr\|A0A1S3V1V8\|A0A1S3V1V8_VIGRR	2.969e-111	77.48	DnaJ homolog subfamily C member 28 OS=Vigna radiat...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018961	DnaJ homologue, subfamily C, member 28, conserved domain	PFAM	PF09350	DJC28_CD	coord: 86..152 e-value: 8.3E-19 score: 78.7
None	No IPR available	PANTHER	PTHR39158	OS08G0560600 PROTEIN	coord: 34..216

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:21736968..21739243-
coding sequence from alignment at chr4:21736968..21739243-

mRNA sequence

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=mRNA; length=651bp
ATGGGCTCGGCGACGTATCTTCGCCTTGAGAGATTTGGATCTCTCAATTT
GCTCTCCCTCCTCTGCTTGCAGAACTCTTCAGTTTCCACCGTCAGATTTT
GTTCATCGTCGTCGTCTTCCGGTAATTCTAAACCAGATAATAAGAAGCTA
GTTGATCGTCTTTCAACTGTAATTGACGCCGTTAATGATCGCAAACTTCC
TCCTGAACTTCGTGGCCAGCGCAACAATGTTAGGTCAGAAACTGACTTGA
TCAACGTTGTTGAGCAAAGAATATGGCATTCAATGGAAGAAGGCCAATTT
GAAAAATTGCCTGGGAAAGGCAAGCCACTAAAGCTTGACACAAATCCTCA
TGCGGATCCAGCTGAAGACACCTTATACAGAATCCTCTCGAAAAATAGAT
GTGCACCGGAGTGGGTCGAGCTTAACAAAGAGATAAGGTCTAGAATATCT
GAATGGAGGATGTCCTTGAAGAAAGCTTGGGCAAATAAATGCAGTGGAGA
TCACTCTGTGTGGGTTGAAAGTTCAGAGGCTTTGAAATTGCAGTTAAAAG
AAATTAATGATAAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTCGG
CAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAATG
A

protein sequence of rna-XM_004497517.3_CaCDCfrontier-NCBI_v1

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=216bp
MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKL
VDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQF
EKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRIS
EWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGR
QMFGLKWEKEISYLEE

mRNA from alignment at chr4:21736968..21739243-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=mRNA; length=2276bp; location=Sequence derived from: chr4:21736968..21739243- (Cicer arietinum
AAAAAAAAACTCAGAAATATTAATGAAAGGAAGCAAGTCGGTTGGTCGTT
GGTAGTCTGAGAGAAGAGATGGGCTCGGCGACGTATCTTCGCCTTGAGAG
ATTTGGATCTCTCAATTTGCTCTCCCTCCTCTGCTTGCAGAACTCTTCAG
TTTCCACCGTCAGATTTTGTTCATCGTCGTCGTCTTCCGGTAATTCTAAA
CCAGATAATAAGAAGCTAGTTGATCGTCTTTCAACTGTAATTGACGCCGT
TAATGATCGCAAACTTCCTCCTGAACTTCGTGGCCAGCGCAACAATGTTA
GGTATTGGACATACACACAATTCCCTCTTTTACAATCACAAAATTAACTT
TTTCTTTTATTCATATCGTCTCTTTCGCTTATTCGATGGATTCAAGTGCT
TACTGAATACATGAAATTCTTTACTTTTTTACTCAAAATTATGGTTTTCA
TTCCTTGTCAAATATTATTAACTGCCCACGATACTCTGTTAACATTTGTC
AATTTATTCTGAATATGAAACCAAACGCATGTAATTAGAACTTCCAATAT
TTTATATGTATCTTTGTTTACAAGATTGAAGGTTCAAACTTTTTGGTCCA
CCAATTTGATGCTTAAAAATCTCAAATATTGGTCAAATTCTATGACACCG
ACACGACACCAATATATTGATTACTTTCATTTAATTAGTTATGTCAGATT
GTTGATGTGTCAGTGTTGTATTCGTGCCAGTATTTGTGTTTGATAGGTCA
AATTAATTATTTTTAGGATGTTCATCAGTGAAACTTTAGCCTTTAGACCC
GTCAGAGATTAATTTGATCGATATGTATAATATTTGATGACCAAATTAGT
AAATAGTAATTATTTTACCTCAGTTGGGGTCTTTATATATATTAATATGT
AAGAAATGGATTGACACCAGGGAAACTCTAGTTGCACCAAAACTACCAAA
TGCACCAGTGCTATGCCCTTAGTATCAGTATGTATATGGTCGCTTTTCAT
ATCTTCCCAATGGTTGGTTAATAAAATTGCCAACGGGTTCAGGGATCTGT
GAACTTGAGGCACTGGTTGCTATTGGCTGTCATGTCTACCAATAATGCCA
TGTTAGTACGTAACATAAGATGTATATGTTTTGATTATAAATGAGAATAT
GACAGAACATTAAAAAAAGTGATATATCACCAAGTTAATAGTACAGTATA
ATTGGTCTTGCTTGTATACAATGCTTTTGATGATTTGGTGTTTGTTTTGT
CAATTGTCATCATCATCTGGTTTTGTTTAACACAAGTTTGGCTGTTAGAC
AGGTCAGAAACTGACTTGATCAACGTTGTTGAGCAAAGAATATGGCATTC
AATGGAAGAAGGCCAATTTGAAAAATTGCCTGGGAAAGGCAAGCCACTAA
AGCTTGACACAAATCCTCATGCGGATCCAGCTGAAGACACCTTATACAGA
ATCCTCTCGAAAAATAGATGTGCACCGGAGTGGGTCGAGCTTAACAAAGA
GATAAGGTCTAGAATATCTGAATGGAGGATGTCCTTGAAGAAAGCTTGGG
CAAATAAATGCAGTGGAGATCACTCTGTGTGGGTTGAAAGTTCAGAGGCT
TTGAAATTGCAGTTAAAAGAAATTAATGATAAGGTGAGCTGGTTGGGTCA
TTTTGTCGTGCTAATGTTTGCAGGAAATTGGAGAACTGAATATGATTCTT
GCAAGTATTGAATTATGTCTTTGATGGTTGTAATGCAGTTTTAATACATC
TCTTTTTCTTTTGCAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTC
GGCAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAA
TGATGAAAGTCATTGTTGAACGAATTGATGTACGATTTTAGAATATTAGA
ATTTGTTATTTCCCTGAAGGGTGGTCATGCCAGCTGAATAATCATATGGC
CTAAGTATTTAGTTCAACTTTGGATGATTAATTTGTTAACTTGCAATGTT
TGGTGCATGTTTGGGTTAGAGTTAAGTTTTGTGAAATCAAGGTGGCATTG
TAATTTTGTTGAACCCCTAAAGTGTAGTTTTTGCTAAAATCAGTGTTACA
CTGTGATTTTGCCAACTTATTGTCAATCAAGACATGCACCAGAGCTAGTG
AACGTCATTGTTTATGATCCCTCTATCAGAGCATAGTTTGGCTGTAATTA
TATGGTTTATTACCTTCAATCGGGTAAACCAAAGGAAACATATAGTGAAA
GTGAATGAGAACAAATCTTTGCACAA

Coding sequence (CDS) from alignment at chr4:21736968..21739243-

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=CDS; length=651bp; location=Sequence derived from: chr4:21736968..21739243- (Cicer arietinum
ATGGGCTCGGCGACGTATCTTCGCCTTGAGAGATTTGGATCTCTCAATTT
GCTCTCCCTCCTCTGCTTGCAGAACTCTTCAGTTTCCACCGTCAGATTTT
GTTCATCGTCGTCGTCTTCCGGTAATTCTAAACCAGATAATAAGAAGCTA
GTTGATCGTCTTTCAACTGTAATTGACGCCGTTAATGATCGCAAACTTCC
TCCTGAACTTCGTGGCCAGCGCAACAATGTTAGGTCAGAAACTGACTTGA
TCAACGTTGTTGAGCAAAGAATATGGCATTCAATGGAAGAAGGCCAATTT
GAAAAATTGCCTGGGAAAGGCAAGCCACTAAAGCTTGACACAAATCCTCA
TGCGGATCCAGCTGAAGACACCTTATACAGAATCCTCTCGAAAAATAGAT
GTGCACCGGAGTGGGTCGAGCTTAACAAAGAGATAAGGTCTAGAATATCT
GAATGGAGGATGTCCTTGAAGAAAGCTTGGGCAAATAAATGCAGTGGAGA
TCACTCTGTGTGGGTTGAAAGTTCAGAGGCTTTGAAATTGCAGTTAAAAG
AAATTAATGATAAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTCGG
CAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAATG
A

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018961	DnaJ_homolog_subfam-C_membr-28

Search form

rna-XM_004497517.3