rna-XM_004497517.3

Transcript Overview
Namerna-XM_004497517.3
Unique Namerna-XM_004497517.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length651
Productuncharacterized LOC101500104
References
External references for this mRNA
DatabaseAccession
GeneID101500104
GenBankXM_004497517.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:21736968..21739243 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL346Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0639Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0838Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0451Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancanL1094Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caicanL0465Cicer arietinum ICC 4958 genome v2Cicer arietinum
canccR0449Cajanus cajan Asha genome v1.0Cajanus cajan
cancrR415Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cantifR238Vicia faba cv. Tiffany genome v1.0Vicia faba
canvfhR247Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
canvrvR341Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR358Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR316Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR355Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR360Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR199Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR213Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvuaR251Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR270Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR242Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR253Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canpsR263Pisum sativum Cameor genome v1aPisum sativum
canpsR295Pisum sativum Cameor genome v1aPisum sativum
canpsR369Pisum sativum Cameor genome v1aPisum sativum
avjcanL314Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL407Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR212Cicer arietinum
cancarR236Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_006370Cajanus cajan Asha genome v1.0Cajanus cajan
Psat6g077160.2Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_10570Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_19078Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_11383.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101500104gene-LOC101500104_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004497517.3_CaCDCfrontier-NCBI_v1rna-XM_004497517.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004497517.3_CaCDCfrontier-NCBI_v1rna-XM_004497517.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004497517.3-3exon-XM_004497517.3-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004497517.3-2exon-XM_004497517.3-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004497517.3-1exon-XM_004497517.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004497574.1cds-XP_004497574.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004497574.1cds-XP_004497574.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004497574.1cds-XP_004497574.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


Homology
[Close]
BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:900673-902719 REVERSE LENGTH=241)

HSP 1 Score: 267.7 bits (683), Expect = 5.176e-91
Identity = 130/177 (73.45%), Postives = 146/177 (82.49%), Query Frame = 0 
Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRSETD+INVVEQRIWHSMEEG FE LPGKGKPL L TNPHADPAEDTLYRIL+KN  APEWVELNKEIR++  EWR+SLKKAW  K   D S W E S+ LK +LK+IN+ VFRYNLIVPFGRQMFGLKWEKEI  L+E
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINVVEQRIWHSMEEGHFENLPGKGKPLNLHTNPHADPAEDTLYRILNKNGFAPEWVELNKEIRNKAKEWRVSLKKAWTMKLEEDQSGWEERSDLLKNELKQINNMVFRYNLIVPFGRQMFGLKWEKEIDRLKE 241
[Close]
BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:901452-902719 REVERSE LENGTH=363)

HSP 1 Score: 53.5286 bits (127), Expect = 2.630e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105
[Close]
BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:901452-902719 REVERSE LENGTH=363)

HSP 1 Score: 53.5286 bits (127), Expect = 2.630e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105
[Close]
BLAST of rna-XM_004497517.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:901452-902719 REVERSE LENGTH=363)

HSP 1 Score: 53.5286 bits (127), Expect = 2.630e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:   40 SGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSE 80
            + +SK   KK  +R S VIDAV+DRKLPPELRG+R+ VRS+
Sbjct:   65 TASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8VCE1|DJC28_MOUSE (DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.657e-14
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 0 
Query:   86 VVEQRIWHSMEEGQFEKLPGKGKPLK-LDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSL---KKAWANKCS-GDHSVWVESSEALKLQLKEINDKVFRYNLIVP-FGRQMFGLKWEKEISYLEE 216
            +VE  I  SM +G F+ L GKGKPLK      + DP    L RIL  N   PEW+ + KEI+  I + R +L   +K   N  S  +   W +  E  + +++++N ++  +NLIVP   RQ      +KEI  ++E
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKVHFDAQKEIIRVQE 339
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q9NX36|DJC28_HUMAN (DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 3.062e-11
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 0 
Query:   86 VVEQRIWHSMEEGQFEKLPGKGKPLKLDTN-PHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWR----MSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVP-FGRQMFGLKWEKEI 211
            +VE  I  SM +G F+ L GKGKPLK  ++  + DP    L RIL  N   PEW+   KEI   I + R    +S KK        +   W    E  +  ++++N ++  +NLIVP   RQ      +KEI
Sbjct:  203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILTRQKVHFDAQKEI 334
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y0X2|A0A1S2Y0X2_CICAR (Uncharacterized protein LOC101500104 OS=Cicer arietinum OX=3827 GN=LOC101500104 PE=4 SV=1)

HSP 1 Score: 442.58 bits (1137), Expect = 5.156e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 
Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE
Sbjct:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4W481|A0A9D4W481_PEA (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_062088 PE=4 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 6.913e-126
Identity = 186/219 (84.93%), Postives = 194/219 (88.58%), Query Frame = 0 
Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLRL R  SLN LSL    NS +STVR+ SSSSS    GN+KPD KKL DRLS+VIDAVNDRKLPPELRGQRN VRSETDLINVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRSRIS+WR+SLKKAWANKCSGD S+WVESSEALK QLKEINDKVFRYNLIVPFGRQM GLKWEKE+ YLEE
Sbjct:   21 MSVATYLRLRRHASLNFLSLFHFHNSPLSTVRWSSSSSSPSSSGNTKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNVVRSETDLINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISQWRVSLKKAWANKCSGDQSMWVESSEALKSQLKEINDKVFRYNLIVPFGRQMSGLKWEKELGYLEE 239
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N7A9|A0A2K3N7A9_TRIPR (DnaJ subfamily c member 28-like protein OS=Trifolium pratense OX=57577 GN=L195_g022168 PE=4 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.895e-122
Identity = 184/220 (83.64%), Postives = 196/220 (89.09%), Query Frame = 0 
Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNS----KPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLRL R  SLN LSLL   NS +STVR+CSSSSSS ++    KPD KKL DRLS+VIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSME+GQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEW+ELNKEIRSRISEW++SLKKAWANK SGDHS+WVESSE LK QLKEIN+KVFRYNLIVPFGRQM GL WEKE+SYLEE
Sbjct:    1 MSMATYLRLGRCVSLNSLSLLHFHNSPLSTVRYCSSSSSSPSTSVKSKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEDGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWIELNKEIRSRISEWKISLKKAWANKYSGDHSMWVESSEILKSQLKEINNKVFRYNLIVPFGRQMSGLNWEKELSYLEE 220
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P0V8|A0A2Z6P0V8_TRISU (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_25560 PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 7.812e-122
Identity = 181/218 (83.03%), Postives = 192/218 (88.07%), Query Frame = 0 
Query:    1 MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNS--KPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            M  ATYLR  R  SLN LSLL   NS +STVR+ SSS  S +   KPD KKL DRLS+VIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSME+GQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRSRISEW++SLKKAW+NKCSGDHS+WVESSE LK QLK+INDKVFRYNLIVPFGRQM GL WEKE+SYLEE
Sbjct:    1 MMMATYLRFGRCVSLNSLSLLHFHNSPLSTVRYSSSSLPSSSVKSKPDKKKLGDRLSSVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEDGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISEWKISLKKAWSNKCSGDHSMWVESSEVLKSQLKQINDKVFRYNLIVPFGRQMSGLNWEKELSYLEE 218
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MWQ7|A0A4D6MWQ7_VIGUN (Nucleobase:cation symporter-1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g881 PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.487e-113
Identity = 176/219 (80.37%), Postives = 185/219 (84.47%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGN-----SKPD-NKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F S+N   L       VST RF SSSSSS +      KP   KKL+DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWRMSLKKAWA KC GDHS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTSINSRDLF------VSTARFSSSSSSSSSSSSSSGKPKTGKKLMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRMSLKKAWATKCGGDHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 214
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RXA7|A0A0B2RXA7_GLYSO (DnaJ-like subfamily C member 28 OS=Glycine soja OX=3848 GN=D0Y65_026176 PE=4 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 6.497e-113
Identity = 176/223 (78.92%), Postives = 187/223 (83.86%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS----------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL RF +++ LSL       VST RF  SSSSS          G SK   KKL+DRLS VIDAVNDRKLPPELRGQR+NVRSETD+INVVEQRIWH+MEEG+FE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR SLKKAWA KCSGDHS WVESSEALK QL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLGRFTTIDSLSLF------VSTARFSFSSSSSSSSSSSSSSSGKSKT-GKKLMDRLSAVIDAVNDRKLPPELRGQRSNVRSETDIINVVEQRIWHTMEEGKFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRKSLKKAWATKCSGDHSEWVESSEALKSQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 217
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|I1L947|I1L947_SOYBN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_10G063500 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 2.022e-112
Identity = 176/221 (79.64%), Postives = 187/221 (84.62%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS--------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL RF +++ LSL       VST RF  SSSSS        G SK   KKL+DRLSTVIDAVNDRKLPPELRGQR+NVRSETD+INVVEQRIWH+MEEG+FE LPGKGKPLKLDTNPHADPAEDTLYRILSKN  APEWVELNKEIRS+ISEWR SLKKAWA KCSGDHS WVESSEALK QL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLGRFTTIDSLSLF------VSTARFSFSSSSSSSSSSSSSGKSKT-GKKLMDRLSTVIDAVNDRKLPPELRGQRSNVRSETDIINVVEQRIWHTMEEGKFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGYAPEWVELNKEIRSKISEWRKSLKKAWATKCSGDHSEWVESSEALKSQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 215
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3STB5|A0A0S3STB5_PHAAN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G290700 PE=4 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 4.412e-112
Identity = 173/222 (77.93%), Postives = 185/222 (83.33%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F ++N  +L       VST RF SSSSSS         G SK   KK +DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTINSRALF------VSTTRFSSSSSSSSSSSSSSSSGKSK-TGKKFMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRLSLKKAWATKCGGEHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216
[Close]
BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TVH2|A0A0L9TVH2_PHAAN (DnaJ homologue subfamily C member 28 conserved domain-containing protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0183910 PE=4 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 4.412e-112
Identity = 173/222 (77.93%), Postives = 185/222 (83.33%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F ++N  +L       VST RF SSSSSS         G SK   KK +DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLDTNPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTINSRALF------VSTTRFSSSSSSSSSSSSSSSSGKSK-TGKKFMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRLSLKKAWATKCGGEHSEWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216
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BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V1V8|A0A1S3V1V8_VIGRR (DnaJ homolog subfamily C member 28 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770946 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 2.969e-111
Identity = 172/222 (77.48%), Postives = 185/222 (83.33%), Query Frame = 0 
Query:    4 ATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSS---------GNSKPDNKKLVDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFEKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRISEWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGRQMFGLKWEKEISYLEE 216
            AT LRL  F +++  +L       VST RF SSSSSS         G SK   KKL+DRL+ VIDAV+DRKLPPELRGQRNNVRSETD+INVVEQRIWHSMEEGQFE LPGKGKPLKLD NPHADPAEDTLYRILSKN CAPEWVELNKEIRS+ISEWR+SLKKAWA KC G+HS WVESSE LKLQL+EINDKVFRYNLIVPFGRQMFGLKWEKE+ YLEE
Sbjct:    2 ATCLRLRGFTTIDSRALF------VSTARFSSSSSSSSSSSSSSSSGKSK-TGKKLMDRLTAVIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDANPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRISLKKAWATKCGGEHSQWVESSENLKLQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEE 216
The following BLAST results are available for this feature:
BLAST of rna-XM_004497517.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
|5.176e-9173.45Symbols: no symbol available | no full name availa... [more]
|2.630e-860.98Symbols: no symbol available | no full name availa... [more]
|2.630e-860.98Symbols: no symbol available | no full name availa... [more]
|2.630e-860.98Symbols: no symbol available | no full name availa... [more]
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BLAST of rna-XM_004497517.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q8VCE1|DJC28_MOUSE1.657e-1435.04DnaJ homolog subfamily C member 28 OS=Mus musculus... [more]
sp|Q9NX36|DJC28_HUMAN3.062e-1134.85DnaJ homolog subfamily C member 28 OS=Homo sapiens... [more]
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BLAST of rna-XM_004497517.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y0X2|A0A1S2Y0X2_CICAR5.156e-157100.00Uncharacterized protein LOC101500104 OS=Cicer arie... [more]
tr|A0A9D4W481|A0A9D4W481_PEA6.913e-12684.93DnaJ homologue subfamily C member 28 conserved dom... [more]
tr|A0A2K3N7A9|A0A2K3N7A9_TRIPR2.895e-12283.64DnaJ subfamily c member 28-like protein OS=Trifoli... [more]
tr|A0A2Z6P0V8|A0A2Z6P0V8_TRISU7.812e-12283.03DnaJ homologue subfamily C member 28 conserved dom... [more]
tr|A0A4D6MWQ7|A0A4D6MWQ7_VIGUN1.487e-11380.37Nucleobase:cation symporter-1 OS=Vigna unguiculata... [more]
tr|A0A0B2RXA7|A0A0B2RXA7_GLYSO6.497e-11378.92DnaJ-like subfamily C member 28 OS=Glycine soja OX... [more]
tr|I1L947|I1L947_SOYBN2.022e-11279.64DnaJ homologue subfamily C member 28 conserved dom... [more]
tr|A0A0S3STB5|A0A0S3STB5_PHAAN4.412e-11277.93DnaJ homologue subfamily C member 28 conserved dom... [more]
tr|A0A0L9TVH2|A0A0L9TVH2_PHAAN4.412e-11277.93DnaJ homologue subfamily C member 28 conserved dom... [more]
tr|A0A1S3V1V8|A0A1S3V1V8_VIGRR2.969e-11177.48DnaJ homolog subfamily C member 28 OS=Vigna radiat... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018961DnaJ homologue, subfamily C, member 28, conserved domainPFAMPF09350DJC28_CDcoord: 86..152
e-value: 8.3E-19
score: 78.7
NoneNo IPR availablePANTHERPTHR39158OS08G0560600 PROTEINcoord: 34..216

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=mRNA; length=651bp
ATGGGCTCGGCGACGTATCTTCGCCTTGAGAGATTTGGATCTCTCAATTT
GCTCTCCCTCCTCTGCTTGCAGAACTCTTCAGTTTCCACCGTCAGATTTT
GTTCATCGTCGTCGTCTTCCGGTAATTCTAAACCAGATAATAAGAAGCTA
GTTGATCGTCTTTCAACTGTAATTGACGCCGTTAATGATCGCAAACTTCC
TCCTGAACTTCGTGGCCAGCGCAACAATGTTAGGTCAGAAACTGACTTGA
TCAACGTTGTTGAGCAAAGAATATGGCATTCAATGGAAGAAGGCCAATTT
GAAAAATTGCCTGGGAAAGGCAAGCCACTAAAGCTTGACACAAATCCTCA
TGCGGATCCAGCTGAAGACACCTTATACAGAATCCTCTCGAAAAATAGAT
GTGCACCGGAGTGGGTCGAGCTTAACAAAGAGATAAGGTCTAGAATATCT
GAATGGAGGATGTCCTTGAAGAAAGCTTGGGCAAATAAATGCAGTGGAGA
TCACTCTGTGTGGGTTGAAAGTTCAGAGGCTTTGAAATTGCAGTTAAAAG
AAATTAATGATAAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTCGG
CAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAATG
A
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protein sequence of rna-XM_004497517.3_CaCDCfrontier-NCBI_v1

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=216bp
MGSATYLRLERFGSLNLLSLLCLQNSSVSTVRFCSSSSSSGNSKPDNKKL
VDRLSTVIDAVNDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQF
EKLPGKGKPLKLDTNPHADPAEDTLYRILSKNRCAPEWVELNKEIRSRIS
EWRMSLKKAWANKCSGDHSVWVESSEALKLQLKEINDKVFRYNLIVPFGR
QMFGLKWEKEISYLEE
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mRNA from alignment at chr4:21736968..21739243-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=mRNA; length=2276bp; location=Sequence derived from: chr4:21736968..21739243- (Cicer arietinum
AAAAAAAAACTCAGAAATATTAATGAAAGGAAGCAAGTCGGTTGGTCGTT
GGTAGTCTGAGAGAAGAGATGGGCTCGGCGACGTATCTTCGCCTTGAGAG
ATTTGGATCTCTCAATTTGCTCTCCCTCCTCTGCTTGCAGAACTCTTCAG
TTTCCACCGTCAGATTTTGTTCATCGTCGTCGTCTTCCGGTAATTCTAAA
CCAGATAATAAGAAGCTAGTTGATCGTCTTTCAACTGTAATTGACGCCGT
TAATGATCGCAAACTTCCTCCTGAACTTCGTGGCCAGCGCAACAATGTTA
GGTATTGGACATACACACAATTCCCTCTTTTACAATCACAAAATTAACTT
TTTCTTTTATTCATATCGTCTCTTTCGCTTATTCGATGGATTCAAGTGCT
TACTGAATACATGAAATTCTTTACTTTTTTACTCAAAATTATGGTTTTCA
TTCCTTGTCAAATATTATTAACTGCCCACGATACTCTGTTAACATTTGTC
AATTTATTCTGAATATGAAACCAAACGCATGTAATTAGAACTTCCAATAT
TTTATATGTATCTTTGTTTACAAGATTGAAGGTTCAAACTTTTTGGTCCA
CCAATTTGATGCTTAAAAATCTCAAATATTGGTCAAATTCTATGACACCG
ACACGACACCAATATATTGATTACTTTCATTTAATTAGTTATGTCAGATT
GTTGATGTGTCAGTGTTGTATTCGTGCCAGTATTTGTGTTTGATAGGTCA
AATTAATTATTTTTAGGATGTTCATCAGTGAAACTTTAGCCTTTAGACCC
GTCAGAGATTAATTTGATCGATATGTATAATATTTGATGACCAAATTAGT
AAATAGTAATTATTTTACCTCAGTTGGGGTCTTTATATATATTAATATGT
AAGAAATGGATTGACACCAGGGAAACTCTAGTTGCACCAAAACTACCAAA
TGCACCAGTGCTATGCCCTTAGTATCAGTATGTATATGGTCGCTTTTCAT
ATCTTCCCAATGGTTGGTTAATAAAATTGCCAACGGGTTCAGGGATCTGT
GAACTTGAGGCACTGGTTGCTATTGGCTGTCATGTCTACCAATAATGCCA
TGTTAGTACGTAACATAAGATGTATATGTTTTGATTATAAATGAGAATAT
GACAGAACATTAAAAAAAGTGATATATCACCAAGTTAATAGTACAGTATA
ATTGGTCTTGCTTGTATACAATGCTTTTGATGATTTGGTGTTTGTTTTGT
CAATTGTCATCATCATCTGGTTTTGTTTAACACAAGTTTGGCTGTTAGAC
AGGTCAGAAACTGACTTGATCAACGTTGTTGAGCAAAGAATATGGCATTC
AATGGAAGAAGGCCAATTTGAAAAATTGCCTGGGAAAGGCAAGCCACTAA
AGCTTGACACAAATCCTCATGCGGATCCAGCTGAAGACACCTTATACAGA
ATCCTCTCGAAAAATAGATGTGCACCGGAGTGGGTCGAGCTTAACAAAGA
GATAAGGTCTAGAATATCTGAATGGAGGATGTCCTTGAAGAAAGCTTGGG
CAAATAAATGCAGTGGAGATCACTCTGTGTGGGTTGAAAGTTCAGAGGCT
TTGAAATTGCAGTTAAAAGAAATTAATGATAAGGTGAGCTGGTTGGGTCA
TTTTGTCGTGCTAATGTTTGCAGGAAATTGGAGAACTGAATATGATTCTT
GCAAGTATTGAATTATGTCTTTGATGGTTGTAATGCAGTTTTAATACATC
TCTTTTTCTTTTGCAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTC
GGCAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAA
TGATGAAAGTCATTGTTGAACGAATTGATGTACGATTTTAGAATATTAGA
ATTTGTTATTTCCCTGAAGGGTGGTCATGCCAGCTGAATAATCATATGGC
CTAAGTATTTAGTTCAACTTTGGATGATTAATTTGTTAACTTGCAATGTT
TGGTGCATGTTTGGGTTAGAGTTAAGTTTTGTGAAATCAAGGTGGCATTG
TAATTTTGTTGAACCCCTAAAGTGTAGTTTTTGCTAAAATCAGTGTTACA
CTGTGATTTTGCCAACTTATTGTCAATCAAGACATGCACCAGAGCTAGTG
AACGTCATTGTTTATGATCCCTCTATCAGAGCATAGTTTGGCTGTAATTA
TATGGTTTATTACCTTCAATCGGGTAAACCAAAGGAAACATATAGTGAAA
GTGAATGAGAACAAATCTTTGCACAA
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Coding sequence (CDS) from alignment at chr4:21736968..21739243-

>rna-XM_004497517.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497517.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497517.3; organism=Cicer arietinum; type=CDS; length=651bp; location=Sequence derived from: chr4:21736968..21739243- (Cicer arietinum
ATGGGCTCGGCGACGTATCTTCGCCTTGAGAGATTTGGATCTCTCAATTT
GCTCTCCCTCCTCTGCTTGCAGAACTCTTCAGTTTCCACCGTCAGATTTT
GTTCATCGTCGTCGTCTTCCGGTAATTCTAAACCAGATAATAAGAAGCTA
GTTGATCGTCTTTCAACTGTAATTGACGCCGTTAATGATCGCAAACTTCC
TCCTGAACTTCGTGGCCAGCGCAACAATGTTAGGTCAGAAACTGACTTGA
TCAACGTTGTTGAGCAAAGAATATGGCATTCAATGGAAGAAGGCCAATTT
GAAAAATTGCCTGGGAAAGGCAAGCCACTAAAGCTTGACACAAATCCTCA
TGCGGATCCAGCTGAAGACACCTTATACAGAATCCTCTCGAAAAATAGAT
GTGCACCGGAGTGGGTCGAGCTTAACAAAGAGATAAGGTCTAGAATATCT
GAATGGAGGATGTCCTTGAAGAAAGCTTGGGCAAATAAATGCAGTGGAGA
TCACTCTGTGTGGGTTGAAAGTTCAGAGGCTTTGAAATTGCAGTTAAAAG
AAATTAATGATAAGGTATTTCGGTATAATCTCATTGTACCTTTTGGTCGG
CAAATGTTTGGCCTTAAGTGGGAGAAAGAGATCAGTTATTTAGAAGAATG
A
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR018961DnaJ_homolog_subfam-C_membr-28